Basic Information

Gene Symbol
nfxl1
Assembly
GCA_964007535.1
Location
OZ023334.1:16635143-16653962[-]

Transcription Factor Domain

TF Family
zf-NF-X1
Domain
zf-NF-X1 domain
PFAM
PF01422
TF Group
Zinc-Coordinating Group
Description
This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 18 3 3.9e+04 -4.4 3.2 14 19 162 167 162 167 0.87
2 18 0.85 1.1e+04 -2.4 0.5 4 10 198 204 198 204 0.93
3 18 3.6e-07 0.0047 18.0 16.4 1 19 212 229 212 229 0.99
4 18 0.00065 8.5 7.6 17.1 1 19 265 283 255 283 0.86
5 18 3.4e-06 0.044 14.9 18.5 1 19 318 336 318 336 0.99
6 18 2.8e-05 0.36 12.0 11.3 1 18 371 388 371 389 0.97
7 18 1.7 2.3e+04 -3.4 0.3 1 5 398 402 398 407 0.72
8 18 0.00012 1.6 9.9 16.5 1 18 423 440 423 441 0.92
9 18 3.7e-10 4.9e-06 27.5 15.4 1 19 450 468 450 468 0.99
10 18 1.6 2.1e+04 -3.3 1.0 5 10 496 501 496 501 0.89
11 18 0.15 2e+03 0.1 6.4 10 19 517 526 514 526 0.89
12 18 0.029 3.8e+02 2.3 5.9 3 12 537 546 529 546 0.84
13 18 1.4 1.8e+04 -3.0 4.9 14 18 574 578 574 579 0.92
14 18 1.9 2.5e+04 -3.5 1.4 6 10 605 609 604 609 0.88
15 18 3.8e-06 0.049 14.8 11.8 1 18 615 634 615 635 0.97
16 18 1e-05 0.13 13.4 16.0 1 18 646 662 646 663 0.93
17 18 5.2e-05 0.68 11.1 15.6 1 18 708 727 708 728 0.90
18 18 0.76 9.9e+03 -2.2 0.4 1 4 1053 1056 1053 1057 0.89

Sequence Information

Coding Sequence
ATGGAACGTCATGGTAAAGGCCGTGGAAACCCGTGGAATCGCGGGACGCAACACAATAATGGTCCGAAAAATCCTCAATCTGCCTTACAAGCTGAAAGCAGATTTGAGAAAGCACGAGCTCAGATGCATGAAGCTGCACAAAAGCACTCGAAACAAGCATACGAGTCAAGTTCAGAGGAAGAGGAACTGGAAAGTGAAAACATTCTTGGCTCCGTGCTCAAGTCCTATTCGCAGCTGGGAGGCAAGAGCGAAGACCTTGGACGTACTCAGCGGTTCTTGGAAGACGCGTTTCAATCTGGTGCGGCGACATGTCTCATCTGTATTGCAACTGTCAAGAGGAACGACGCGATATGGAGCTGTTCCAACTGCTATTGCTTCTTCCACCTGACGTGTATTCAACGTTGGGGAAAAGACAGCGTAATACATCAGAAGCAAGCGTCCGAAGAACAGCCGCGCACGAAAATAACTCCTGAAttccactggccttgCCCAAAGTGCCGCCACGAATACGTAGAGAGCAGCACGCCACAGCGATACCGTTGCTTCTGTGGTCGCACGGAAGATCCCGTGTTTCACCCGTGGAACGTCCCGCACTCGTGCGGAGATACATGCGGCCGGCCATTACTGCCTCTGTGTGGCCACGACTGCTTGCTGCTCTGTCATCCAGGACCATGCCCGCCGTGTCCCAAGACAGTGAAGACCACGTGCTACTGCGCCAAGCAAGCGCCGCGTCCCCAGCGCTGCAGCAACAAGTCGTGGTCTTGCGGCGCTCCATGCGGTGCCACTCTGAAGTGCAGGCGCCACACCTGCCCTGCCACATGCCACCCAGACAACTGCCCGGCCTGCCCTAAGACCAGCCAGCAGCGATGTCTGTGCGGCACGAAGGAGGCACTGCGTCCTTGCCTGGACCCGGTGTGGCAGTGCGATAAGAAGTGCCTGAAGCCCTACTCGTGCGGCAACCACTGTTGCGAGCTGACGTGCCACGCTGGCTCATGCGGCACCtgtcccctctctctctctcgctcatgCCCGTGCGGCAAGGCTTCCTACACCCTGCCGTGCACAGCAGACACTCCTCTGTGCGGAGACACATGCGGCATGGCTCTAGAGTGCGGTTCTCACATATGTTCGCGGCCGTGCCACCGAGACAAGTGCGGCAGTTGCTTGGAAGTGGTCAAGAAGCGTTGCCGTTGCGGCCTTCACGCGAGAGAACTCCCGTGCCAGAAAGTCTACCTCTGCGAGACGAAATGCAATAACAGCAAAGACTGTCGTCGTCACCCGTGCAATCGCAAGTGTTGCGACGGCAATTGTCCGCCGTGCGAGAAGCCGTGCGAACGTACTTTGCCGTGTGGACGTCACAAGTGCCAATCGGTGTGTCACCAAGGCCCGTGTTACCCGTGCCCGCTCACGGCCGACGTGTCATGCCGGTGTCGACAGACCGTGCTGACAGTGCCATGCGGCCGACAGAAGAAGACCAAACCTCCTCGCTGCTCCAAGCCCTGCGGCTTGCTGCCCGACTGTCATCATCCCAGCAGACAGCCACATCGCTGTCACTTCTCAGACTGCCCTCCGTGCAGAATCGTCTGTGGCAAACAATTCCGAAACTGCGCTCATAAATGTCCGGCATCATGTCACTCGGCAATCTGGGTGACCTTGGAAAGTAAAAAGCCTGCGGGTCCTTGGGAGAAAGTCGCGCCTGTGATCGAGCTCCAGGCCCTCCCATGCCCACCCTGCGTGGTACCGATGCCCGTCACATGTCTCGGCCAGCACGAGACGGCCAACTGGCCGTGTCACATTGCGCGACCCTCGTCTTGCCAACGGAAGTGCGGTCAAGCGCTGCTGTGCGGGAACCACTCGTGCGACCTGCCCTGCCACCTTGTGAAGGGCAACTGTGGGCAGTGCGAGAGGGAGTGCTCGAAGCAGAGGTCTGACGGGTGCAGCCACGCGTGTCGGAAGCCGTGTCACCCAGGCCCGTGTGCCCCGTGCGAACAGATGTTGAGGTTGCGCTGTCACTGCTCGTTGAACCAATTGTACGTGAGGTGTGGCGAGTGGACGACGGCCGAGCAGGAAAAGAAGATCGCAGTTCAGAGCTGCACGAACCAGTGTCCGAAGAATTTCGAGTGCGGTCATCGTTGTCATACACCTTGTCACGCAGGCGACTGCCCCGATCCCTCTTCGTGCCGCAAGAAAGTCAAGGTCTTCTGTACGTGTCGTCGTCTCCGTCGCGAGTTCCCCTGCGATGACGTGCGCGCCGACCGAGCCAGAGTGCCCTGCGACGACGTCTGCTACCAGCTCAAGGAACAGGAGCGCAAGACGAAAGAAGCGGAGCTCGAGCAGAAGCGTGTCGAGGAAGAAAACAAAAACGGGGCGGAAGTGGAGAAGTTCGAGAAGAAGTTTCAGGGGCGCAAGAAACGTCGTGAAAGAAGGCAGAACGACGTCGAAGAGGAAGTGTCTTTTTTGAAACGTTATTGGTTCTGGGACTGGTTCGTGAAAGTCAACGATGTTCAGGAGCTTTGGGCGGCGCAGCCGACGTACTTGTTGGTCCAAGCCTCGTTTCTCCTGGGATTCCTCACCACGTTCATACACGCTGTGAGGAATGGCGGACGATACCCGTACCTCTGGATAGGAACGATACTCCACGGGATATTCGTAGAGATCGTCACTTACAACCTGGACGACATTGACAACTTCTGGCACTCGCAGACTCCAATCGTCTTCTTGGGCCGTCGGTTACCGCTCCACATCATCACTTTGTACCCTGTCTTCTTATACAATGCTTCGGTTGCTGTCTCCAAACTGCGTCTTCCCAACTGGGCAGAGCCGTTTGCCGTTGGCCTCACTGTCGTCTTGATCGACATTCCGTACGACATTGTCTCCGTGAAGTTCCTCCACTGGACCTGGCACGATACTGATCCCAACATTGCTGACAGACACTACTGGGTTCCGTGGAACTCGTACTATTTCCACGCCACGTTTGCCGCtagcttcactttcttcttccacgGCCTACGTCGATGGTTCTGCCGCCCGCAGACCAACAAGTGGCAAGCGAGCAACTTTATCCGCGAATCGCTATTCACTCTTCTTCCGTCCTTATTCGGCATGCCTGGCGGTGTGCTCCTCTTTCTCCCTCTTTACCACCCTCTCCACGACCTGTGCGGGATCCACTCGGAGGTCACCCTCTTTATGCTCTTCACCATATTCCTGGTCATCATGTGGTCTGCAGACAGGAACCCCACGGCCGGGTCCAGACCCCAACCGGGGCAGAAGACCACCAAGGGAACGTGTCTGCTGTGTTTACAGCTGATCGGTCACTACCTCTTATTCCTGTCGTTGGTCTTGTTCTGGAATCCGGAGAACGAAGTGTCGATCGGGATGCACGAAAAGACAGGACCGTGCAACGAAGTGGTTCCCATTCAGACGGCGTTTGGAACGGTTTTGGAAAAGAGGCGTTACTTGTGCGTGACTGACTACAACGAGGATTACTTCGACTTCAGTTGTTTGCCCGGCGCCAGGCTGCCGGTCAATGGATCCACTTGGTACACGGCTTGCGGAACTCCGTTCGAAAACCGAGCCGAATATATTGCGATAATTGGCACCATTTGTTTCACTGCCGCGATTGTATTTTACAATATGCACTTCCGTTCAGCTAGAGCTGTTCCTGTTGCCACCAAAACAAAAAGCAAGAAACAATAA
Protein Sequence
MERHGKGRGNPWNRGTQHNNGPKNPQSALQAESRFEKARAQMHEAAQKHSKQAYESSSEEEELESENILGSVLKSYSQLGGKSEDLGRTQRFLEDAFQSGAATCLICIATVKRNDAIWSCSNCYCFFHLTCIQRWGKDSVIHQKQASEEQPRTKITPEFHWPCPKCRHEYVESSTPQRYRCFCGRTEDPVFHPWNVPHSCGDTCGRPLLPLCGHDCLLLCHPGPCPPCPKTVKTTCYCAKQAPRPQRCSNKSWSCGAPCGATLKCRRHTCPATCHPDNCPACPKTSQQRCLCGTKEALRPCLDPVWQCDKKCLKPYSCGNHCCELTCHAGSCGTCPLSLSRSCPCGKASYTLPCTADTPLCGDTCGMALECGSHICSRPCHRDKCGSCLEVVKKRCRCGLHARELPCQKVYLCETKCNNSKDCRRHPCNRKCCDGNCPPCEKPCERTLPCGRHKCQSVCHQGPCYPCPLTADVSCRCRQTVLTVPCGRQKKTKPPRCSKPCGLLPDCHHPSRQPHRCHFSDCPPCRIVCGKQFRNCAHKCPASCHSAIWVTLESKKPAGPWEKVAPVIELQALPCPPCVVPMPVTCLGQHETANWPCHIARPSSCQRKCGQALLCGNHSCDLPCHLVKGNCGQCERECSKQRSDGCSHACRKPCHPGPCAPCEQMLRLRCHCSLNQLYVRCGEWTTAEQEKKIAVQSCTNQCPKNFECGHRCHTPCHAGDCPDPSSCRKKVKVFCTCRRLRREFPCDDVRADRARVPCDDVCYQLKEQERKTKEAELEQKRVEEENKNGAEVEKFEKKFQGRKKRRERRQNDVEEEVSFLKRYWFWDWFVKVNDVQELWAAQPTYLLVQASFLLGFLTTFIHAVRNGGRYPYLWIGTILHGIFVEIVTYNLDDIDNFWHSQTPIVFLGRRLPLHIITLYPVFLYNASVAVSKLRLPNWAEPFAVGLTVVLIDIPYDIVSVKFLHWTWHDTDPNIADRHYWVPWNSYYFHATFAASFTFFFHGLRRWFCRPQTNKWQASNFIRESLFTLLPSLFGMPGGVLLFLPLYHPLHDLCGIHSEVTLFMLFTIFLVIMWSADRNPTAGSRPQPGQKTTKGTCLLCLQLIGHYLLFLSLVLFWNPENEVSIGMHEKTGPCNEVVPIQTAFGTVLEKRRYLCVTDYNEDYFDFSCLPGARLPVNGSTWYTACGTPFENRAEYIAIIGTICFTAAIVFYNMHFRSARAVPVATKTKSKKQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
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