Bris022883.1
Basic Information
- Insect
- Brachyptera risi
- Gene Symbol
- -
- Assembly
- GCA_964007535.1
- Location
- OZ023332.1:42072544-42109124[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.3 26 6.6 2.0 2 19 502 519 501 525 0.93 2 14 0.91 80 5.1 7.1 1 23 536 559 536 559 0.96 3 14 0.079 7 8.4 0.1 1 21 565 585 565 589 0.90 4 14 0.0071 0.63 11.7 1.5 2 23 610 632 609 632 0.97 5 14 0.00039 0.035 15.6 1.9 1 21 637 657 637 658 0.95 6 14 5.5 4.8e+02 2.6 0.1 1 19 703 721 703 725 0.76 7 14 0.02 1.8 10.2 0.5 1 23 741 762 741 762 0.98 8 14 1.8e-05 0.0016 19.9 0.4 1 23 768 791 768 791 0.97 9 14 0.14 12 7.6 1.3 1 23 803 827 803 827 0.96 10 14 0.0016 0.15 13.7 2.0 1 23 834 856 834 856 0.95 11 14 4.6 4.1e+02 2.8 0.9 1 23 861 885 861 885 0.93 12 14 0.00046 0.041 15.4 0.3 1 23 891 913 891 913 0.98 13 14 0.041 3.6 9.3 6.5 1 23 919 941 919 941 0.96 14 14 0.0079 0.7 11.5 2.5 1 22 947 968 947 972 0.93
Sequence Information
- Coding Sequence
- ATGGATACGGACGTGGAGGACGACGCTCACATCTGCCTGAAATGTCGCACGACAATCATCGGCCTGGACAACTACGTCACGCACCGGAAGTCCGGCTGTCAAGTGAGAAAACCAGTCGTCGACTTACCGCCCAGTTTAGAGGAAGAACAAGACCCGAATCTCAAAGCAGACGATTTCTTCTCTTCGCTGGAACTTCAAAGCAGTTCAAAGAAGCCTCCAGTCAGTGTGCCCAACATTTTAACGAAAAACTTCGGGATTCTGACAAGAAGTAGAAAATCAGCGGTGATTAAGAATGTTTCTAAGGATCTGTATCAGATACAAAGTCAGCGAGAATCAGCCACAGAAGACTTGCAAATCATTAGCGAGATCCTCCGAGCGTCCAGTAACGACCCACTCAAGAAACAAGAAGTTGAGGTTGAAGTTGAGGAGTCGAACGATGAATACGAAGATCTTGTTCTGTTGGAGGACGACGAACATGCGCCTCCCCGGTCACACACAGGAGGGAAATGGAAGCCAGGACGCCAGGAGACGTCGCCGCCGACCTGGTCCCGACAGGATCGCACTGCAGGATCCTGGCTGGTCCTGGATACGCCACCTCCATCGCACACCGGCGGCAAGTGGAAGCCGCAGACGCCGATACAGTCGGTCATGCTGCACCCGCTGCAGCACTCGGACGACGAGGAGGAGGTTCACGGCGTGGACTCGGCACCTCCGCCCGGGCACACGAGCGGGAAGTGGGCGCCGGGACGGGACGTGACCACTTCCGGCGGGGAACACAGGAAGTTTGGGAACACGATCCAGTACTGGTGTGGTCCTTGTAATCGACGATTGAGTTCGAGAAATCTTTATGATAAACATCTCAAATCGGAACTGCATGCAAGAAGGACTTACCAAGAACGGGAACTAGATAACGACTTATATCCCGGAAATAGGGAAGTCAATAAAGATATTCAAGGGAGGAATGATCGAGGAGATGGAAAACGAATTGTAAAACCAACTGAATTATATGAAGAATCTGAATTATTCCCTGGGAataagaaaatatcaaaattagaaGAGAATGTCgaaataaaaaagaagaaaaagacgAAAAAACGTAAAGAATTCGTCAAATGCGACGTGTGTTTATCGACTGTTAGTTGCGCCATGATGGGCAAACACCTAGTTTCGCATTACCACCGCCGCAAGGCGCTGCGCGACGACCCTCTGAACGAGATGCTGGTACTGGCCAACATCCACAGGGTGGTCAGACAAGCGCCGTTCCAATGCAGCCCCTGCAGGTTCTACTGCAACACCATGGGCACCTTCAAGCGTCATTGGCGCTCCCAGTTACACACGCTCAATGACGAGAAGACAAACGGACGCTATTGGTGTTCGATCTGCAACTGCATCTGCGACACAACCTCCGACATGCTGGACCACTTCGACAGCGACGACCACAAAGACCTGATCCTCTCGACCAATCACAGCGTCCCAATAGTGATCCGCAAACGTCACTTAATCAGCTGCTGGACCTGCGATCAACAATTCCAGTACAACGCCCAACTTCGTAAACACTGTCTCAAAACTTTGCATCCCGATTTCAATTCGGCAGAAGATCAACGTTTCTTTTGCAATCATTGTACTTTTCGCGCCCATTCCCGTCGATCTCTCCAACGTCATATGACCATGACACATAGGGATAAGGCAGAGTTTTTCTGTTCCCTGTGTGGCGTGAACTTTGCTTCTTCCAGTGAGGCTGCATCCCACAGGAACGGCCAGGAGCACAAGTATAAATCATTGAAAGATAGGAAGAGTAGAGGACTGATTGATAAGGATCTGACGAAGACGTGTCAACATTGTGGGAGTCGTTTTGAAAACGTTTTGGAACTGAAAACGCATCTGAGGGTAGAGCATCCTGGCTCGGCTTACAgATGTCCTCACTGCGGTAAATCCTTCACCCTATGCCAAGAAGTTTCCCGCCACGTGCGCGACAGAGCTTGTGTCTTCTTCGAAACCTCGCAACACTCTCTCACAACACCAAGCAGTTCGTCCAAACAAGAAACCACAACTCTTGCAGACCGCGAAGAATCGACTGTTgccaacaatgacgtcacaTCTTCCGCTTTCAATTGTCCCCAATGCCCTTACAAGACCGACTCCAAAGCCGAATCTCTAGTCCACGAGATCCTACACGGCGACTcgaaagtgaaaaaaagtaaaaccGTTTCACATCCGAAATATCAGTGCACAATGTGTGAAAAACTTGTCCGTAAAACAGCCCTCTTGAGTCATATCAATACGCACCTCGGCGATCACACGTTCGTCTGCGAAACGTGCGGCAAGGCGTTCGGGTATCGCTCGTCAATGATCAGCCATATGAAGAGAGTGCATCTGGGAGGTGATGAAAGCGAACACGACGTTTCGTATGAATGTGAAACGTCGACTTGTAACTTCAAGACGTCGAGTAGAGCGACGTTATTACGTCATAGTTTAAGACACACGGTACGACCGAAGCCGTTTCTATGCGCTGTATGTGGCAGTAACTTCCGGCTTAGACATAACTTGCAGCAGCACATGAAATTGCATACGGGCAAGGAGTACAAGTGCGATCTGACCGGATGCATCTTCGAGTGTCGATCGCGGGCAGAGCTGAGGAACCATTGGACGGCGCACTCGGACGAGCGGGCGTTCAAGTGTGCGGTTTGCGACTATGCGGCGAAGACTAAACCGCAACTGAAACGgCATCGTCTGATCCACGAGGAGGTGAAAGGTCACGCCTGTTCTCACTGCCCCTTCAAGTCGCGCATTTCCTCGCACCTGCGGCGCCACCTTCGCCTGCACACCGGCGCCAAACCGTATCGCTGTCCCTATTGCTCCTACACTTGCAACATACTGGAAAACTTACGTAAACACGTATTAACCACAAGTAAACACCCCGGCAAGAAAATGTACGAGTGTAAATTCTGTTGCACCGAACTGTACGCTACCAACATGGCTAAAGACTTCAAGGTCCATCTGGTGACGGTTCATCCAACTACCTTCAACACGGCGTCCGTCGCGACGACGTACATCGCCGGTATTTACGACGCCGACGACGACCCCAGGCACATCGACACGCCGCTGGCTGTCCGTCCGAGGCCAGAACGGAACATGGTTACGGGGAAACGTGACAGTGGAGCCAAAACAACAAGTTTAAAAATCATGCCaattaagaaaaataaaaaattatcgaaAAAAGTCGAACCAAATTCTCTGGCAAAAACGATAGTGGATGACTGCGAGGTGAACCGTGCCGTGGATAGCCGCGAGGTGAACCGTGCCGTGAATGTTGTTGATAATCCTACGGGCGATGTGATTTTTATCACTTCCGTTAGCGACGTCCCGgccggatcagctgttttgttTGCCGGCGAGGCCGACCAGTACTTGTCGGTGATTGGCTACGATCGGCAACACGGGgctctgattggccaggaggaGATCATCATGCTACCGTTAGAGAGCGACGTGACGGTAACGGTAGCGAGTATTGATCACGTGGATGAGCAACTGGTCGGTGAGCAACAATAG
- Protein Sequence
- MDTDVEDDAHICLKCRTTIIGLDNYVTHRKSGCQVRKPVVDLPPSLEEEQDPNLKADDFFSSLELQSSSKKPPVSVPNILTKNFGILTRSRKSAVIKNVSKDLYQIQSQRESATEDLQIISEILRASSNDPLKKQEVEVEVEESNDEYEDLVLLEDDEHAPPRSHTGGKWKPGRQETSPPTWSRQDRTAGSWLVLDTPPPSHTGGKWKPQTPIQSVMLHPLQHSDDEEEVHGVDSAPPPGHTSGKWAPGRDVTTSGGEHRKFGNTIQYWCGPCNRRLSSRNLYDKHLKSELHARRTYQERELDNDLYPGNREVNKDIQGRNDRGDGKRIVKPTELYEESELFPGNKKISKLEENVEIKKKKKTKKRKEFVKCDVCLSTVSCAMMGKHLVSHYHRRKALRDDPLNEMLVLANIHRVVRQAPFQCSPCRFYCNTMGTFKRHWRSQLHTLNDEKTNGRYWCSICNCICDTTSDMLDHFDSDDHKDLILSTNHSVPIVIRKRHLISCWTCDQQFQYNAQLRKHCLKTLHPDFNSAEDQRFFCNHCTFRAHSRRSLQRHMTMTHRDKAEFFCSLCGVNFASSSEAASHRNGQEHKYKSLKDRKSRGLIDKDLTKTCQHCGSRFENVLELKTHLRVEHPGSAYRCPHCGKSFTLCQEVSRHVRDRACVFFETSQHSLTTPSSSSKQETTTLADREESTVANNDVTSSAFNCPQCPYKTDSKAESLVHEILHGDSKVKKSKTVSHPKYQCTMCEKLVRKTALLSHINTHLGDHTFVCETCGKAFGYRSSMISHMKRVHLGGDESEHDVSYECETSTCNFKTSSRATLLRHSLRHTVRPKPFLCAVCGSNFRLRHNLQQHMKLHTGKEYKCDLTGCIFECRSRAELRNHWTAHSDERAFKCAVCDYAAKTKPQLKRHRLIHEEVKGHACSHCPFKSRISSHLRRHLRLHTGAKPYRCPYCSYTCNILENLRKHVLTTSKHPGKKMYECKFCCTELYATNMAKDFKVHLVTVHPTTFNTASVATTYIAGIYDADDDPRHIDTPLAVRPRPERNMVTGKRDSGAKTTSLKIMPIKKNKKLSKKVEPNSLAKTIVDDCEVNRAVDSREVNRAVNVVDNPTGDVIFITSVSDVPAGSAVLFAGEADQYLSVIGYDRQHGALIGQEEIIMLPLESDVTVTVASIDHVDEQLVGEQQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -