Basic Information

Insect: Brachyptera risi
Gene Symbol: -
Assembly: GCA_964007535.1
Location: OZ023336.1:11817828-11820311[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 8.8e-06 0.00078 20.8 1.7 2 23 332 353 331 353 0.97

2 8 1 89 4.9 0.8 1 23 358 381 358 381 0.90

3 8 0.033 2.9 9.6 2.3 1 18 658 675 658 675 0.95

4 8 0.79 70 5.3 10.0 1 21 687 707 687 709 0.94

5 8 0.13 11 7.7 4.9 1 23 715 737 715 737 0.98

6 8 4.3e-07 3.8e-05 25.0 3.6 1 23 743 765 743 765 0.99

7 8 0.00022 0.019 16.5 8.2 1 23 771 793 771 793 0.98

8 8 0.0012 0.11 14.1 2.3 1 21 799 819 799 820 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	8.8e-06	0.00078	20.8	1.7	2	23	332	353	331	353	0.97
2	8	1	89	4.9	0.8	1	23	358	381	358	381	0.90
3	8	0.033	2.9	9.6	2.3	1	18	658	675	658	675	0.95
4	8	0.79	70	5.3	10.0	1	21	687	707	687	709	0.94
5	8	0.13	11	7.7	4.9	1	23	715	737	715	737	0.98
6	8	4.3e-07	3.8e-05	25.0	3.6	1	23	743	765	743	765	0.99
7	8	0.00022	0.019	16.5	8.2	1	23	771	793	771	793	0.98
8	8	0.0012	0.11	14.1	2.3	1	21	799	819	799	820	0.95

Sequence Information

Coding Sequence: ATGAAGGAATCCAATTATCCAGTATTCAAGCCAATGTGCATTTTCCCTGCGAGTTCATTGCTGTCCTTAAGGAATGAACCTGAATATGGATCACCAAGTGACCCAGGTCCAAAGTCCTTATTTCAACAGACAGGAACATCATCTGTTGGCCAGATATTAGGTGAAGATTGTCCGCGTAAGATTCCTTGTTTTTCTAGTTCTGCCAAAGCAATTGCGATATTGAATGAGTGTGCAGAGTGGTCACAATATGAAGATGAGTTGAAAGATGGAGGTATATATGATAAATGTGATCGAAAAGAGATCGAAGATATACCAAATAGATATCCTCATGTCACGTACTCCAGCAAAGCActcacgaaaaaaaatgaatcgtcCAACACAACTGAGATTAGGGACGTATCTGAAGATACTCCTGGAAAGTTGCATTGCTTTTCACGATCTTCCAAAGCACTTGCGATATTAAACGAAACTTATTCGATGGAAGAAAATTCGGAAACATCTGGAAATATGGTAGATCTAGACAAGAAAGCAAAGTTTCATGGTATGTCTGGACAAAGggataaaaacaaaattgtagAGATATCATTTCCAGAAAATTCTGTTGAATATCCAGAGGCTGTCAAAATCCAAGGAAAAAATGGACAAAAAAGAGATTCACATTTGAAGGAAGTCAAAAGAGCACTTGATTTCGATTTTCTTGATGACACTCTAGACCACGATGATATCAGTTACCACGTGAAAATGTTCACTGAGAGAAATGAAGATCTATACTCAAAAGGCTTGAGTTTGCGTCCGGAAGATAATGAACCTTTCTCCGATGACGATTTTCAACGCTACATCAACAATCCACTCCGAGATTCGGACATTTCAGACGAATTTGATCCGATTATTCTGGGTGACCCGATTCGATCTCATGAGATATATGCACACAATGCGATGAATATACCGAATGTCACAATGGATGTCGGCTATTTTGATGAGGACAACAGATCTACATGTAATATTTGTACGAAATCATTTGTGAAAAAGTCCGACTTTACGTTACACATAAAGATGCACGTGATGTTACCTTATCAATGTAAGTCATGTGACGAATGCTGTTTGACAGCCGAGCTGATGGAGGATCATGTTGCTGTGGCTCATTCAATGGTCAAACGAGATGTGGTCAAGAAAGAAATGctgagaaagagaaagagtggAATAGGAACGTTGAAAAGGGGAACGGAAAACAAAACTTTGACTGGcttaatattgaaaaacaaaacgtCGAATGgaggaagagagaaaaaaaaaactttgacaAATCAGTATTTGAGTGAGAAACCATCTGAGAAAAGAAAGTTGAGGAAAGCAGAACTGAAACAGGAAGtgaaaaaggagaaaaaaacgAGTGGAGAAAAATTCgagcagaaaaaaatgaagcaTCAATCGCATAGGAAGGAAACGTACGAACGGAAGATGATGAGAGATAAAAACATTGCACATGGAAAAGTTGATCTAGATATTTTCGAGAAAAATGGTGTGAAAAATTTGGCCATGGGGAATGAAGTGGTGAAAAGAGGAGATGTGAGGAGAGTGAAAGCAATAGAGAATACGGTGAACAAAGAAGAGATTTGGAAACAAGGGTCGAAAAGAAGACAGGAACAGAAAGAAGGGTTTgaagagaaattgaaaaatggaacTTTGAAGAAAGACCATTCTAAGAGAGAATCAGAGAAGGGAACGTTGGAAAAATCAGGAATCATCAGGAGAGAAGTGGGAAATGAGATAAAAAGAGGAGGAGAATTGACGAAAGGAACCATAAACAAAGAAGCATCGGGAAGAGAAGAGAAAAGGAAAGGATTGAAAAAAGAAACGATACAAAATGGATCAGTGAAAACAtattcgaatgaaaaaaaaataccatcgaAACAAAAACCACCCAAACCAGATATTACAAAGAACGAAAACATCGAATCAAAAAATAAACCATTCAAATGTGACACATGTGGaaaaaaatacccaaaacatCGTCAcctaaaaaaaaacgaattcaaCAAACACAATCAAAAACCACACTACATCTGCGAACACTgcaaaaaattcttcaaactcCATTCCTTCTACAAACGTCACCTCCAATGCCACAACAAACCTCGTAACTTCGTCTGCGGAACCTGTGACTCCACCTACACCTGTAGATCCCACCTATCACGTCATCTCATCAAACACACCGGCCTCCGCTCGTTCCAGTGTCACGTGTGCTCTAAGACGTACACGAGGAACGACCAGCTGACCGTGCACTTGCGGACCCACTCCGACGTCGCCCCTTACCACTGCTCTCAGTGCCACAAGCGGTTCAACCGCAGCGATCAGTTCCAGCTGCACCTCAGGCGTCACGACGGCGTCAAACCGTTCCAGTGCGTCGGCTGCAAGTTCGCCTTCTGCCAGAAGAGTGACATGAACAGACATGTCAAGAGGTGTACCAAAGTACAGAAGGAATAG
Protein Sequence: MKESNYPVFKPMCIFPASSLLSLRNEPEYGSPSDPGPKSLFQQTGTSSVGQILGEDCPRKIPCFSSSAKAIAILNECAEWSQYEDELKDGGIYDKCDRKEIEDIPNRYPHVTYSSKALTKKNESSNTTEIRDVSEDTPGKLHCFSRSSKALAILNETYSMEENSETSGNMVDLDKKAKFHGMSGQRDKNKIVEISFPENSVEYPEAVKIQGKNGQKRDSHLKEVKRALDFDFLDDTLDHDDISYHVKMFTERNEDLYSKGLSLRPEDNEPFSDDDFQRYINNPLRDSDISDEFDPIILGDPIRSHEIYAHNAMNIPNVTMDVGYFDEDNRSTCNICTKSFVKKSDFTLHIKMHVMLPYQCKSCDECCLTAELMEDHVAVAHSMVKRDVVKKEMLRKRKSGIGTLKRGTENKTLTGLILKNKTSNGGREKKKTLTNQYLSEKPSEKRKLRKAELKQEVKKEKKTSGEKFEQKKMKHQSHRKETYERKMMRDKNIAHGKVDLDIFEKNGVKNLAMGNEVVKRGDVRRVKAIENTVNKEEIWKQGSKRRQEQKEGFEEKLKNGTLKKDHSKRESEKGTLEKSGIIRREVGNEIKRGGELTKGTINKEASGREEKRKGLKKETIQNGSVKTYSNEKKIPSKQKPPKPDITKNENIESKNKPFKCDTCGKKYPKHRHLKKNEFNKHNQKPHYICEHCKKFFKLHSFYKRHLQCHNKPRNFVCGTCDSTYTCRSHLSRHLIKHTGLRSFQCHVCSKTYTRNDQLTVHLRTHSDVAPYHCSQCHKRFNRSDQFQLHLRRHDGVKPFQCVGCKFAFCQKSDMNRHVKRCTKVQKE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -