Bris024087.2
Basic Information
- Insect
- Brachyptera risi
- Gene Symbol
- lola
- Assembly
- GCA_964007535.1
- Location
- OZ023333.1:10337100-10356615[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 1.5 1.4e+02 4.4 3.2 5 23 42 60 40 60 0.93 2 13 0.00057 0.05 15.1 0.1 1 21 67 87 67 88 0.93 3 13 1.1 95 4.8 1.0 2 21 109 128 108 129 0.89 4 13 0.00041 0.036 15.6 0.6 1 21 137 157 137 158 0.94 5 13 4.8e-05 0.0043 18.5 2.9 1 20 228 247 228 253 0.95 6 13 0.22 19 7.0 0.8 1 21 284 304 284 305 0.94 7 13 0.063 5.6 8.7 4.4 1 20 382 401 382 407 0.92 8 13 0.0034 0.3 12.7 6.7 1 20 413 432 413 434 0.95 9 13 0.056 5 8.9 0.9 1 23 442 465 442 465 0.95 10 13 0.062 5.5 8.7 4.8 1 23 487 509 487 509 0.97 11 13 0.02 1.8 10.3 4.9 1 22 516 537 516 537 0.91 12 13 6.5e-06 0.00057 21.3 1.2 2 21 556 575 555 576 0.94 13 13 4.3e-05 0.0038 18.7 3.1 1 23 584 607 584 607 0.97
Sequence Information
- Coding Sequence
- ATGTTTGTTGTTCGCTATTCCATCCTGGTCTCGTGGATATTTTGGCCGACGAGTATTCGGGCATTCAGTGGATCGGCTGGAATGATATTGTCATCACTTCTGAATGCCGGCTTACTGTGTATCGGCTGCGGCGTGACATTCCCCACGCAGTACAAGCTGAATTGTCACCGGAAACATCATTGCGGAGCCACCGTGACATTCGACTGCGTGGCTTGTGGAGCGAAGTTCACGCGGAAAGTCAACTTGAATGCTCACATCAAGTACGAGTGTGGTAAGCCTGGCCAGTTCCAATATGTGTCCAGTGTGAATCAAGTGTCACTAGTCAAGTGTTCCATCTGCGGCAGTGGTTTTGCCAGTGAGCACAGACTGGCGTGTCACCAGCGACGTCCGTGCAATGCCAGTATGACGTTCCCTTGTCTGTCGTGTGGCAAGCAATATTCGCGCAAAGACACGCTGAAGACACACGTCCAGTACGAGTGTGGTAGCAGTCACGGACAGTTCCAGTGTCGGGTAGTTTGGAAGCCCCCCTCGCCTGCGCAGGCGTTCTATCTGGCACCTTTGCGCACCTCATGCGATGGCGTATCGCACACTGCTGTCAAGGACAAGTGCCAGAAACACAAGGGAGATTCTGATGTTTTCGTATCATACGACGCTTGTGGCTCCAACGAGAACCTCCTCAGGTATGCGTGTCCGTCGTGTCACAGAAGTTACACGCGCAAAGATAACTTGAAGCGTCACGTCGAGCATGAGTGTGGTAAAGAGCCAAATATCCAGTGTCCTTATTATGTCGTCGCGGAGTTTTTGCGTCCTTTCATCAATGTGGTCCGCAGTGAGCAGGACCCGAGTCGGTACAGCTGCGCCTCGTGTCTGCGCACGTACAAGTACAAGCGCGACCTGGACTCGCATGTGAAGCGCGAGTGTGGTAAAGAGCGCCACATCCAGTGTCCGCAGTGCTCGTACCGCGaaatctTTGATTCTGCGTTTCTGGCATTCGAGGCGTCGCATTTCCCGAATCAATTCAGCAACGCTCAACATGACAACCAGTTTCACAAGAAAGATAGCCGATCTATTTACAACGAGAAACAGCTCGATTTCAGTAACGCAACTTGCAGAAGACAGCACTTTGTTGGGAATGCGAATAATTTCGAATGTATCGTTTGTAAAAAAAGATACAAACACAAGTTTCTTCTGAATCGCCACATCACCTATGAGTGTGatCACCTACTGTCCAAGGCATTCGAATGCCCGAAATGCCACAAGTTGTATTCACACCGTTGTAATCTGAACAGGCACATCACGCACGAGTGCGACAAAGAACCGCGCTTCTCGTGTCCGCTCTGCTCATATCGCTCGAAACAGAAGTTCCCGATGATTCGCCATCTAGCGTCCAAGCATCAAATCGCCAATGACGAATGCCATAAATTGACCTCACGTATCGACCTGATTGACCTCTCGGGCTTTCAATGCCCGCTCTGCGGTCGATGGTACACGAAGAAGTTCAACCAGACCAAACACACGAAACATCATTGTGGCAAAGGCAGACAATTCCATTGTTTCTGTTGCGGAAGAAGCTACACTCAGAAGGCTCAGTTGACGTACCACATGAAACGGAAGAATTATGTCAACTGTTTGGTCGTGGACGTCAGTTTTGCAGACGCCGGAAGTCGGTGCAAAACATGCGGCAAAGTTTACAAGCAACGATATAACCTGAATCGTCACGAGCGCTACGAGTGCCAGAAAGAAGCTCAGTTCCCTTGTCCACATTGCCCTTATCGTTCCAAACACAAACCCAACTTGATGAGACATATGTTGTCAAGGCACACtgtatattattga
- Protein Sequence
- MFVVRYSILVSWIFWPTSIRAFSGSAGMILSSLLNAGLLCIGCGVTFPTQYKLNCHRKHHCGATVTFDCVACGAKFTRKVNLNAHIKYECGKPGQFQYVSSVNQVSLVKCSICGSGFASEHRLACHQRRPCNASMTFPCLSCGKQYSRKDTLKTHVQYECGSSHGQFQCRVVWKPPSPAQAFYLAPLRTSCDGVSHTAVKDKCQKHKGDSDVFVSYDACGSNENLLRYACPSCHRSYTRKDNLKRHVEHECGKEPNIQCPYYVVAEFLRPFINVVRSEQDPSRYSCASCLRTYKYKRDLDSHVKRECGKERHIQCPQCSYREIFDSAFLAFEASHFPNQFSNAQHDNQFHKKDSRSIYNEKQLDFSNATCRRQHFVGNANNFECIVCKKRYKHKFLLNRHITYECDHLLSKAFECPKCHKLYSHRCNLNRHITHECDKEPRFSCPLCSYRSKQKFPMIRHLASKHQIANDECHKLTSRIDLIDLSGFQCPLCGRWYTKKFNQTKHTKHHCGKGRQFHCFCCGRSYTQKAQLTYHMKRKNYVNCLVVDVSFADAGSRCKTCGKVYKQRYNLNRHERYECQKEAQFPCPHCPYRSKHKPNLMRHMLSRHTVYY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -