Basic Information

Insect: Brachyptera risi
Gene Symbol: -
Assembly: GCA_964007535.1
Location: OZ023326.1:51326360-51352641[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 0.021 1.9 10.2 1.1 2 23 474 495 473 495 0.88

2 18 0.04 3.6 9.3 0.8 1 23 501 523 501 523 0.94

3 18 0.49 44 5.9 0.1 6 20 541 555 540 557 0.93

4 18 0.15 13 7.5 2.3 1 23 564 586 564 586 0.85

5 18 0.098 8.7 8.1 1.5 2 23 593 615 593 615 0.95

6 18 0.001 0.091 14.3 1.8 1 23 621 643 621 643 0.95

7 18 0.0092 0.82 11.3 1.0 1 23 649 671 649 671 0.98

8 18 0.016 1.4 10.6 2.4 1 23 677 699 677 700 0.96

9 18 0.014 1.2 10.8 0.7 1 23 714 736 714 736 0.98

10 18 0.33 29 6.4 4.4 1 23 743 766 743 766 0.97

11 18 1.2 1e+02 4.7 0.8 1 23 772 794 772 794 0.97

12 18 0.0024 0.22 13.2 4.2 2 23 818 840 817 840 0.95

13 18 0.00022 0.019 16.5 1.1 1 23 846 868 846 868 0.98

14 18 0.00046 0.041 15.4 0.7 1 23 874 896 874 896 0.94

15 18 0.0025 0.22 13.1 1.6 1 23 902 924 902 924 0.97

16 18 0.034 3 9.6 1.1 1 23 930 952 930 952 0.96

17 18 1.7e-05 0.0015 20.0 0.5 1 23 958 980 958 980 0.98

18 18 2.1 1.9e+02 3.9 0.6 3 12 988 997 987 999 0.90

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	0.021	1.9	10.2	1.1	2	23	474	495	473	495	0.88
2	18	0.04	3.6	9.3	0.8	1	23	501	523	501	523	0.94
3	18	0.49	44	5.9	0.1	6	20	541	555	540	557	0.93
4	18	0.15	13	7.5	2.3	1	23	564	586	564	586	0.85
5	18	0.098	8.7	8.1	1.5	2	23	593	615	593	615	0.95
6	18	0.001	0.091	14.3	1.8	1	23	621	643	621	643	0.95
7	18	0.0092	0.82	11.3	1.0	1	23	649	671	649	671	0.98
8	18	0.016	1.4	10.6	2.4	1	23	677	699	677	700	0.96
9	18	0.014	1.2	10.8	0.7	1	23	714	736	714	736	0.98
10	18	0.33	29	6.4	4.4	1	23	743	766	743	766	0.97
11	18	1.2	1e+02	4.7	0.8	1	23	772	794	772	794	0.97
12	18	0.0024	0.22	13.2	4.2	2	23	818	840	817	840	0.95
13	18	0.00022	0.019	16.5	1.1	1	23	846	868	846	868	0.98
14	18	0.00046	0.041	15.4	0.7	1	23	874	896	874	896	0.94
15	18	0.0025	0.22	13.1	1.6	1	23	902	924	902	924	0.97
16	18	0.034	3	9.6	1.1	1	23	930	952	930	952	0.96
17	18	1.7e-05	0.0015	20.0	0.5	1	23	958	980	958	980	0.98
18	18	2.1	1.9e+02	3.9	0.6	3	12	988	997	987	999	0.90

Sequence Information

Coding Sequence: atgaagGTCATTTTGAAAACCGAGGTGGGAAAGTCCATCACATTGAACATTAACCCAGAAGACACGTTCCGAGATATAAAAGAAAGAATGGTGAGCGATGACGGTGTACCATTGGACCTGTTTGTCAATGGGATGGAAGTAACAGATGATCAAAATGTACTCGATTTCTTCTCCGGACAACAAGGCTTGCTGTCTCAGTCGGACGATGAAGCAGACGCAGTAGAAGATGAAGAAGTTGCGTCCCCACTCGAAGTTTGTTGCTCTGTGCCAGGTTGCATCAATACTAAGGCAATTCATCCGAACAAGGCGTTCTTTCGTTTTCCTATCAAAGAAGATCGACGTCACCAATGGCTACTCGTCTGCCAACGTGAAGACCTCATGAGTGAACCAAGCGAGCTATTCAAGAGCTCGCACGCCATCTGTGCCGACCACTTTAGTGCTGAGCAGTTTCAGTCAGCCAAGGAGTTGAAAGTCGACGCAATACCGACTGAGTTTCCGTATATTGTCGAGACGGGGTTGGAGGAACCAACCAGCAAGACCAATGCCTTGCTTGGTGAGTGCGGGCTAATTATCAAGACAGAGCGAGTGAGCCATGCAGGTGAAGAGGAGGGGGAGAGTGTCGTGTACTATAACGACGGCGAGGAGATGGAATCTGACTCCGAGAGCATCGACGACGTTTCGGGCCGGCTCTGTCGGCTCTGTGCCAGCTCGTCTGACGAGATGGTTTATATCTATAGTCCGACTGGCATAGAATTGGGGCTGGCGCACATGATCAACTCCAGCATGCCTATCACGgtGAAGAAGTCTGATAAGTTACCAAAACAGCTTTGCATGTCATGTCTCAGTCGACTGAATACGGCTTATGAACTGGCAGAGGAGTGCATAAGAGCCAAAGAGCAACTCAAcacattgatgaaaatgaaatatttcagGACAAATTCATCACACCAAGACATCGCTAGCCTAGAAACGGTACACCTAAATAAGAGAAGAAAAGTACATCACGTGAACGAGGATGCTGAAAGTGTGCCGACAGAACATGGAAGCGGCGTTTGCTGTCCAATGTGTAAAGAAGAGGATCTTGTCAAGGTTAACCTCAACAGTGCCGAACTGGACGATATATCATACGACAGTTCAGATGAGATTTCATTTTCGGACGAAGAAGTCACGGAAAAGGATTCAATGTCAGATTTGGAAGCAACATTAGCTGGAAGCAAGACCAGTGTGGCAAGGAAGGTGAAGAAAGATCCCGCCCCAGAAATTGCAAACAAATATGTTGTCGTTGAAAATGGTTCTGCATGGTCCAGCAACAATGCCAACGATGCTGTCCTCGAAACGATAGCTGAAGGGGCTGTGCTCGGTGGTAAGACAGACAAAAATGTGCCACTTGATTACCTTTACCAAGACTCGATCCTGGTGACGTGTAAGATATGCGACAAGGTTTTCACCAACATTGATGAGTGTCTCGAACATTCTAAAGTACACGCAGAGGACCACCTTTACCCTTGCAGCCTCTGCGATCTTTGTTACACCAACGAGGAGGACATCAATACGCACTTTGAGGAGCACAAGGTAGAAGAAGAGAAGCGTGGCTCTCCTTCAAGGCTTCTCTTCTGTGCTTGCGGTCGACGGTTCAACAGTGAGAAAACTCTCCGTGAGCATGCATGCGTCACTCGAGAGCGGAAACAGTTCAAGTGCAACGTGTGCAACAAGTCGTTCTGGACATCCGATAGACTTGTGTTCCACCAGAAATTCCACGAAGGTGCTCAGTTGAACTACTGTGAGCTGTGCTTCAAACATTTTGACAATGAAGGTACTCTGTATTACCACAATCGGATGGTCCATGAACATGAACGACGTTTTCCGTGCGAAGATTGCGGGAAGCGATTCCACTCGAAGGCCCGGCTAGTGGCTCACAGTCATGTCCATACAGGCGACCGTCCGTATGAGTGTGACATTTGTAGCAGTCGGTTCTTTAGTCGTGACACGCTCAAAGGTCATTATGTCACGCATATGACTACAAAACCGTTCCAGTGCGAAGTATGTGGCATCTATTGTGCGCGGAAAACCATTCTCAAACAGCACATGGCGTCTCATCATTTAGGAACGCATCCAAAGCGTGTCCCCTCCCTCATACATTACTACTGTAAGGTATGTGTACAGACGTACACCAGCTCTCAAGATGTAGTGAATCACCGACTAAGTCACATGAAGGAGTCTGAAGGTTTCTGTTGTGAATATTGTGGCGTCAATTGTCAGAATGTCAAGTCGTTGAGCTTGCACCAGAAGCGAGATCACCAGGACGAGCGACCGTACATCTGTTCTCTGTGCAAGAACCAGTCGCGGACATTGTACGAGGCACGGATCCACCGCAAGGTTCACATGAGCGATACGTTCGACAACAAAGATGATCTGAGAGCAATTGACGAGTTTGGCAACGCTAAGATGTGCATGTGCGAGAAGTGCGGGAAAATATTCGAGGACAGAAAGTCTCTGTTGATGCATGTCAAGTCTTGCCACGTGAAGGAACTGTTTTACGAGTGTGAATTCTGCGAGAAGAAGTTTGCAGACAACCAGAGACTGACGGTTCATCGCCGACTGCACACTGGAGAGAAGCCTTACGAATGTCAGGTGTGCAACAAACGTTTTGCGCAGACGTCCGCACTCTATACCCACAACCTGTTGCACTCGGGCATCAAGCCGCATTCCTGCGACCTGTGTGGCAAGGCGTTCCGCATCAAGGCCGATCGCGACAACCACCGTCGCACGCACACTGGTGAAAAACCATTCAAGTGCGAGTACTGTGCCAAAGCATTCCGAACGGGACAGGTGTACTACCAACATCGAATGATTCATACTGGCGAGCGACGGTTCCCATGCGATGTGTGTGGTCTTGCATTTAAGCGGTCACATACACTTGTCGTCCATAAGAGAATCCATACCGGCGAGAAACCAAATATATGTGACTTCTGTGGTAAAGGATTTAGACACATGCGTCCTATTCTATCCGTTATGCCACTTGCATATGGTAGTAACGCGGTAGCTATGCTCTTATCTGGCTTCTTCCGAGTTGTTGGAACAAAGTTCATGGCTTTGGATATGTCTTTGTTCGAGTCAAGAAGACTCACTGATGAGCAACACATGTCGGAAGAACTAGTTAGTTTGAGAAAAACATTAGAACAGAACGGCTACTCGAACAAAGACATATCCAAAGCCATGAACTTGTTCCAACAACTCGGAAGAAGCCAGATAAGAGCATAG
Protein Sequence: MKVILKTEVGKSITLNINPEDTFRDIKERMVSDDGVPLDLFVNGMEVTDDQNVLDFFSGQQGLLSQSDDEADAVEDEEVASPLEVCCSVPGCINTKAIHPNKAFFRFPIKEDRRHQWLLVCQREDLMSEPSELFKSSHAICADHFSAEQFQSAKELKVDAIPTEFPYIVETGLEEPTSKTNALLGECGLIIKTERVSHAGEEEGESVVYYNDGEEMESDSESIDDVSGRLCRLCASSSDEMVYIYSPTGIELGLAHMINSSMPITVKKSDKLPKQLCMSCLSRLNTAYELAEECIRAKEQLNTLMKMKYFRTNSSHQDIASLETVHLNKRRKVHHVNEDAESVPTEHGSGVCCPMCKEEDLVKVNLNSAELDDISYDSSDEISFSDEEVTEKDSMSDLEATLAGSKTSVARKVKKDPAPEIANKYVVVENGSAWSSNNANDAVLETIAEGAVLGGKTDKNVPLDYLYQDSILVTCKICDKVFTNIDECLEHSKVHAEDHLYPCSLCDLCYTNEEDINTHFEEHKVEEEKRGSPSRLLFCACGRRFNSEKTLREHACVTRERKQFKCNVCNKSFWTSDRLVFHQKFHEGAQLNYCELCFKHFDNEGTLYYHNRMVHEHERRFPCEDCGKRFHSKARLVAHSHVHTGDRPYECDICSSRFFSRDTLKGHYVTHMTTKPFQCEVCGIYCARKTILKQHMASHHLGTHPKRVPSLIHYYCKVCVQTYTSSQDVVNHRLSHMKESEGFCCEYCGVNCQNVKSLSLHQKRDHQDERPYICSLCKNQSRTLYEARIHRKVHMSDTFDNKDDLRAIDEFGNAKMCMCEKCGKIFEDRKSLLMHVKSCHVKELFYECEFCEKKFADNQRLTVHRRLHTGEKPYECQVCNKRFAQTSALYTHNLLHSGIKPHSCDLCGKAFRIKADRDNHRRTHTGEKPFKCEYCAKAFRTGQVYYQHRMIHTGERRFPCDVCGLAFKRSHTLVVHKRIHTGEKPNICDFCGKGFRHMRPILSVMPLAYGSNAVAMLLSGFFRVVGTKFMALDMSLFESRRLTDEQHMSEELVSLRKTLEQNGYSNKDISKAMNLFQQLGRSQIRA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00242554; iTF_00242270; iTF_00243264;
90% Identity: iTF_00242554; iTF_00242270; iTF_00243264;
80% Identity: iTF_00243264;