Bris036513.1
Basic Information
- Insect
- Brachyptera risi
- Gene Symbol
- -
- Assembly
- GCA_964007535.1
- Location
- OZ023339.1:9793806-9814823[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.00028 0.024 16.1 2.7 1 23 282 306 282 306 0.98 2 13 0.043 3.8 9.2 3.9 1 23 337 359 337 359 0.96 3 13 8.4e-06 0.00075 20.9 4.7 1 23 393 415 393 415 0.98 4 13 0.45 40 6.0 0.9 1 23 421 443 421 443 0.89 5 13 4.8e-06 0.00043 21.7 0.7 1 23 451 473 451 473 0.98 6 13 0.00099 0.088 14.4 2.7 1 23 478 501 478 501 0.94 7 13 0.00013 0.012 17.1 2.7 1 23 508 530 508 530 0.97 8 13 0.028 2.5 9.8 3.0 1 23 535 557 535 557 0.97 9 13 0.0017 0.15 13.7 6.1 1 23 590 612 590 612 0.98 10 13 0.092 8.1 8.2 2.6 1 23 620 642 620 642 0.96 11 13 4.4e-07 3.9e-05 24.9 0.7 1 23 650 673 650 673 0.97 12 13 0.88 78 5.1 0.3 1 20 678 697 678 700 0.91 13 13 0.0097 0.86 11.3 0.8 1 23 706 729 706 729 0.97
Sequence Information
- Coding Sequence
- ATGACGATGGCCAACAATCTGGACAACCTACCTGTCGTGAAACAGGAAGCAGAACTAATCATCGAAGAATCTGACCCGGATGAGCCGGAGTTCGATGTTTTAGTGGTCAAAAAGGAGGAAGATGTTGATGTGAAAGAATGTTATCACTCAGCCTGCCGCCAATATGGCCCAACTTGTACTGGAATCAAACTGCAGTCGAACGTTTCGCCGATACATATCAAGACCGAGAAAGAGGGAATAGAACACTCGCTCCCAACAACACCTCCGTGGGAATCGACTGAAAGAATCATCCTACGAAGTCGTGCGGTGAACTCTTACGATAAACTCGTCCTACGTCCGGTCGTGCTGGTCCGTAGAATCTCGCGGCTTGAGATCGAGAACCACGTCAAGGGAAGACGGGAGGTCAACGCAAAGTCTAGCAGCGGCTATATTGATACCAAGAATCGAAAGGAGGTGACCACTAGGCCTGGCAACTCTTGCGTTTACACGAGCGAGATGATAGAGGAGCATTTGCCAGCATCAAGTATCTCATCGGTCGATCTCGCCGGGAGAAACTCGCCGGTTTCCCTGGTTGCCAGCGATCGTAATACTACAGGACGGTCGAGAAGTCCAAGCAGTTCAAGCAGCTATAGCTCAAGCAGCTCAGACACGTGGAAGTCCATCAGCGACAGCGAACAGCGGCCCGTTGCCGACTCACCGACGACTCAGAATTCTGACGGTGTTGAAAGCATTCGGAAACATACTGACGGAAGAGTACCCGAGAAAGAAGAATTGTCCGAAATGAAAACGAACCAAGGACAAATGTCCAAAATAAAAATGACTAAAGGGAAAAGTAAATCATTGTATGTCTGCCATCTTTGTGACAAGAGCAAAAGTTTCTCTAGGAAAGTATCCTTCAACATCCATCTTCGAATCCATGCGGACCGTGAGTTGAAGCAAGCCGGCCACTACGACCAACCCAACAACCTACGGACCGCGACTAAATTGGCGAATGAAACAGATCACCTGTACCCGTGTTGTGTCTGCAAGACTCGGTTCAGAACCCGTTGCGAGATCAGAGTTCATATAAGCGCGCACATCTCGCGAGAAAGCACGACTTGCATGCTGTGTAAGAAGCCGTGGCCCAGACAGATGAGCCACAAAGCCCACTTGCTCGACCACATGGGCTTCGTTTTACACACGTGCCACGACTGCGAGAAATCATTTTGCGGAAAAAGCGCGTTGGTAGAGCACATGCGTATCCACACCGTCGATAAGCCGTTCGAGTGTAGCGAATGTCCGATGACTTTCTTTCTGCGAAAGTATCGTGATCAGCACGCGATGTCGCACAAACCGGTAACTGAGTGGCCGTTCAGTTGCCAAGTGTGCGGCAAGAGATTCACGAGTGAGGCAAGCGTCCGATCGCATATGTCAACGCACAAGACGGAACGGTTTCAGTGCGACGAGTGCGAACGTTCGTACTCTATGAAAATATCTTTGACGCGGCACAAGCTCCATAACCACAATCAAAACACTCCGAAGTTTCCTTGCCCGAAGTGCGAGAAACGTTTTCACACTCGTTACGCGTTGAGAGTGCACGAGAAGTACCACGAGGGCAGAACGTTCAAATGCGACCAGTGCCCTAAAACCTATCTGACGTTGAAGCATCTCACGGGGCACAAGCTCTCCCACCGTAGACCTGAAGTTCAGTGTGAAGTGTGTAATAAATATATCAAGTTCAATTCGTTGTACTGTCACATGACATTGCACACCGACAGGCCGAGAGTGTTTGCCTGTCATCTGTGCGAGAAGAAGTTTGCGAAGAAATGCGGCTTTCAATCGCATCTGCGGACGCATTTAACGAATGGAGAAAGACCTTTTCCGTGCACGAGATGCGAGAAGCGGTTCAACACGTTGTTGATACTGAGGCATCATCTCGAGAAGCACGGAGAAGAGGCGCGGAAACCTTTCCAATGCGTGAAGTGCGGTAAAGGTTTCGCCAGAAAGAAGAATCTTACGAGACACGTTGCTACGATGCATGGTTTGCGAGAGTATGCTTGTGATAAGTGTCCCAATGTTTATGACATCAAGTATTTGTTGGACCGACATAAGTGGACCCATGTCGGAGTTAAACCGTTCGAGTGTGATTATTGTAAGAGTACGTTTGCTAGTAAAGGAGTTGTTAAGTATCATATTAATAGACAACATATTGCCGCTCtctgtggctcagtcagctga
- Protein Sequence
- MTMANNLDNLPVVKQEAELIIEESDPDEPEFDVLVVKKEEDVDVKECYHSACRQYGPTCTGIKLQSNVSPIHIKTEKEGIEHSLPTTPPWESTERIILRSRAVNSYDKLVLRPVVLVRRISRLEIENHVKGRREVNAKSSSGYIDTKNRKEVTTRPGNSCVYTSEMIEEHLPASSISSVDLAGRNSPVSLVASDRNTTGRSRSPSSSSSYSSSSSDTWKSISDSEQRPVADSPTTQNSDGVESIRKHTDGRVPEKEELSEMKTNQGQMSKIKMTKGKSKSLYVCHLCDKSKSFSRKVSFNIHLRIHADRELKQAGHYDQPNNLRTATKLANETDHLYPCCVCKTRFRTRCEIRVHISAHISRESTTCMLCKKPWPRQMSHKAHLLDHMGFVLHTCHDCEKSFCGKSALVEHMRIHTVDKPFECSECPMTFFLRKYRDQHAMSHKPVTEWPFSCQVCGKRFTSEASVRSHMSTHKTERFQCDECERSYSMKISLTRHKLHNHNQNTPKFPCPKCEKRFHTRYALRVHEKYHEGRTFKCDQCPKTYLTLKHLTGHKLSHRRPEVQCEVCNKYIKFNSLYCHMTLHTDRPRVFACHLCEKKFAKKCGFQSHLRTHLTNGERPFPCTRCEKRFNTLLILRHHLEKHGEEARKPFQCVKCGKGFARKKNLTRHVATMHGLREYACDKCPNVYDIKYLLDRHKWTHVGVKPFECDYCKSTFASKGVVKYHINRQHIAALCGSVS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -