Basic Information

Insect: Brachyptera risi
Gene Symbol: -
Assembly: GCA_964007535.1
Location: OZ023339.1:15374400-15380253[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.03 2.6 9.7 0.0 3 23 273 293 271 293 0.96

2 13 0.00061 0.054 15.1 5.2 1 23 299 321 299 321 0.98

3 13 0.0031 0.27 12.8 6.0 1 23 327 349 327 349 0.99

4 13 0.0031 0.27 12.8 5.5 1 23 355 377 355 377 0.99

5 13 0.00042 0.037 15.5 5.2 1 23 383 405 383 405 0.99

6 13 0.00028 0.025 16.1 4.8 1 23 411 433 411 433 0.98

7 13 0.0066 0.58 11.8 6.3 1 23 439 461 439 461 0.98

8 13 0.00055 0.048 15.2 5.0 1 23 467 489 467 489 0.99

9 13 6.4e-05 0.0057 18.1 2.7 1 23 495 517 495 517 0.98

10 13 0.00048 0.043 15.4 3.2 1 23 523 545 523 545 0.99

11 13 0.0031 0.28 12.8 7.1 1 23 551 573 551 573 0.98

12 13 0.00083 0.074 14.6 1.7 1 23 579 601 579 601 0.98

13 13 0.13 12 7.7 10.7 1 23 607 629 607 629 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.03	2.6	9.7	0.0	3	23	273	293	271	293	0.96
2	13	0.00061	0.054	15.1	5.2	1	23	299	321	299	321	0.98
3	13	0.0031	0.27	12.8	6.0	1	23	327	349	327	349	0.99
4	13	0.0031	0.27	12.8	5.5	1	23	355	377	355	377	0.99
5	13	0.00042	0.037	15.5	5.2	1	23	383	405	383	405	0.99
6	13	0.00028	0.025	16.1	4.8	1	23	411	433	411	433	0.98
7	13	0.0066	0.58	11.8	6.3	1	23	439	461	439	461	0.98
8	13	0.00055	0.048	15.2	5.0	1	23	467	489	467	489	0.99
9	13	6.4e-05	0.0057	18.1	2.7	1	23	495	517	495	517	0.98
10	13	0.00048	0.043	15.4	3.2	1	23	523	545	523	545	0.99
11	13	0.0031	0.28	12.8	7.1	1	23	551	573	551	573	0.98
12	13	0.00083	0.074	14.6	1.7	1	23	579	601	579	601	0.98
13	13	0.13	12	7.7	10.7	1	23	607	629	607	629	0.98

Sequence Information

Coding Sequence: ATGGATCCAGATCCCCTAGCGATAGTGAAGGAGGAGGAAGATCATGCTGACACCGAAGTGAAGTACGAACCACTGGTTGCGTTGGAATCAGtggctgctaacatgactgagtgtgatcccagcaagtctGAACTAAAGGAACAGTTTTTCGAGTCAGCCGCTTCAAGCTTGGAGCGAGTAATGACACATAACGGGCTATTAGTGTTGAAACAGGAAGAGCTGGATATCACAGATGAATGCGCGTTCGAGCCGGCAGCTTCAAGCACGGAACAGGGAAAAGAACAGGATTGGCCACTAGTACTGAAACGGGAAGAACCGGATATCAAGGAAGAGTGTTCGCTTGAGCCGGCAGCTTTGAGCACGGAACAGGGAAAAGAACAGAATTGGCCACTAGTACTGAAACGGGAAGAACCGGATATCAAGGAAGAGTGTTCGCTTGAGCCGGCAGCCTTGAGCACCGAACAGGGAAATGAACAAGACAGGCTACTTGTACTGAAAGAGGAAGAATTGAATATCAAGGATGAATGTGCGTTCGAGTCGGAAGAATCGGACGAGCTAGCTTCGGTAACGGTCAAAGAAGAACCAGCTGAAAACTGTTCCAATGATGGAGCAAATGAAATGAGCATGGATGAATCAACATGGGAGTCCACTGAGCGAGATGCTCACACGCAAACATCGTCTACGAGTGTGGACAACGACACGAGCCATCTGAAGACATTCACTACCGGAATAAAGAACGAGAGAGGCGAGCTGTTATCTGAGAAGAACAAGAGAATGAAATCAGATGAGAAGACAGTCGAAGATTATTCTATAATCTGCAGTGTGTGTGGCTTCAAGGCTGCCAAACCATATGTACTGAAGACTCACATGTTGATACACACTGGTGAGAAGTCATTCCAGTGCATGGAATGTTCTTTCAAGTGCAATCGGGCAAGTCATCTGAAACAACATATGTTGGTACACACCGGTGAGAAGCCATTCCAGTGCATGGTATGTTCTTTCAAGTGCAGTCAGGCCTGTAATCTGAAACAACATATGTTGACACACACTAGTGAGAAGCCATTCCAGTGTAAGGAATGTTCTTTTAAGAGCTGTCGGCGAAGAACCTTGGaaacacacatgttgacacatactggtgagaagcCATTCCAGTGCATGGAATGTTCTTTCAAGTGCAGTCAAGCCAGTCATCTGAAACAACATATATTGACACACACCGGTGAGAAGCCATTCCAGTGCATGGAATGTTCTTTCAAGTGCAGTCATGCCAGTAATCTGAAACAACATATGTTGATACACACTGGTGAGAAGCCTTTCCAGTGCATGGAATGTTCTTTCAAGTGCATTCAGGCCAGTCATCTGAAACAACATATGTTTAAACACACTGGTGAGAAGCCTTTCCAGTGCATGGAATGTTCTTTCAAGTGCATTCAGGCCAGTCATCTGAAACAACATATGTTGACACACACCGGTGAGAAGCCATTCCAGTGCATGGAATGTTCTTTCAAGTGCAGTCAGGCCAGTAATCTGAAACAACATATGTTGATACACACTGGTAAGAAGTCTTTCCAGTGCATGGAATGTTCTTTCAAGTGCATTCAGGCCAGTTATCTGAAACAACATATGTTGACACACACTAGTGAGAAGCCATTCCAGTGCATGGAATGTTCTTTCAAGTGCAGTCAGGCCAGTCATCTGAAACAACATATGTTTAAACACACTGGTGAGAAGCCATTCCAGTGCATGGAATGTTCTTTCAAATCCAGCCAGGCTGGTAATCTGAAACAACATATGTTTAAACACACTGGTGAGAAGCCATTCCAGTGCATGGAATGTTCTTTCAAGTGCTGTCAGGCCAGGCATCTGAAAAAACATATGTTTAAACACACCGGTGAGAAGCCATTCTAG
Protein Sequence: MDPDPLAIVKEEEDHADTEVKYEPLVALESVAANMTECDPSKSELKEQFFESAASSLERVMTHNGLLVLKQEELDITDECAFEPAASSTEQGKEQDWPLVLKREEPDIKEECSLEPAALSTEQGKEQNWPLVLKREEPDIKEECSLEPAALSTEQGNEQDRLLVLKEEELNIKDECAFESEESDELASVTVKEEPAENCSNDGANEMSMDESTWESTERDAHTQTSSTSVDNDTSHLKTFTTGIKNERGELLSEKNKRMKSDEKTVEDYSIICSVCGFKAAKPYVLKTHMLIHTGEKSFQCMECSFKCNRASHLKQHMLVHTGEKPFQCMVCSFKCSQACNLKQHMLTHTSEKPFQCKECSFKSCRRRTLETHMLTHTGEKPFQCMECSFKCSQASHLKQHILTHTGEKPFQCMECSFKCSHASNLKQHMLIHTGEKPFQCMECSFKCIQASHLKQHMFKHTGEKPFQCMECSFKCIQASHLKQHMLTHTGEKPFQCMECSFKCSQASNLKQHMLIHTGKKSFQCMECSFKCIQASYLKQHMLTHTSEKPFQCMECSFKCSQASHLKQHMFKHTGEKPFQCMECSFKSSQAGNLKQHMFKHTGEKPFQCMECSFKCCQARHLKKHMFKHTGEKPF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -