Basic Information

Insect: Brachyptera risi
Gene Symbol: -
Assembly: GCA_964007535.1
Location: OZ023333.1:9328876-9344609[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 3e-05 0.0026 19.2 2.9 1 20 129 148 129 150 0.96

2 14 0.49 43 5.9 0.5 1 12 158 169 158 171 0.89

3 14 0.025 2.3 9.9 8.4 1 21 223 243 223 244 0.95

4 14 0.0026 0.23 13.1 1.8 1 15 252 266 252 268 0.92

5 14 0.012 1 11.0 3.0 1 21 283 303 283 304 0.95

6 14 0.0044 0.39 12.3 4.3 1 21 312 332 312 333 0.96

7 14 4.9e-05 0.0043 18.5 0.9 1 21 339 359 339 360 0.96

8 14 0.033 2.9 9.6 0.9 3 21 370 388 368 389 0.92

9 14 0.074 6.6 8.5 6.0 1 21 397 417 397 418 0.94

10 14 1.5 1.3e+02 4.4 0.2 1 12 424 435 424 438 0.90

11 14 0.0073 0.65 11.7 8.0 1 21 456 476 456 481 0.96

12 14 0.00025 0.022 16.3 2.7 1 21 485 505 485 506 0.97

13 14 0.026 2.3 9.9 1.3 1 21 512 532 512 533 0.93

14 14 1.3e-08 1.2e-06 29.7 0.2 1 21 541 561 541 562 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	3e-05	0.0026	19.2	2.9	1	20	129	148	129	150	0.96
2	14	0.49	43	5.9	0.5	1	12	158	169	158	171	0.89
3	14	0.025	2.3	9.9	8.4	1	21	223	243	223	244	0.95
4	14	0.0026	0.23	13.1	1.8	1	15	252	266	252	268	0.92
5	14	0.012	1	11.0	3.0	1	21	283	303	283	304	0.95
6	14	0.0044	0.39	12.3	4.3	1	21	312	332	312	333	0.96
7	14	4.9e-05	0.0043	18.5	0.9	1	21	339	359	339	360	0.96
8	14	0.033	2.9	9.6	0.9	3	21	370	388	368	389	0.92
9	14	0.074	6.6	8.5	6.0	1	21	397	417	397	418	0.94
10	14	1.5	1.3e+02	4.4	0.2	1	12	424	435	424	438	0.90
11	14	0.0073	0.65	11.7	8.0	1	21	456	476	456	481	0.96
12	14	0.00025	0.022	16.3	2.7	1	21	485	505	485	506	0.97
13	14	0.026	2.3	9.9	1.3	1	21	512	532	512	533	0.93
14	14	1.3e-08	1.2e-06	29.7	0.2	1	21	541	561	541	562	0.96

Sequence Information

Coding Sequence: ATGCGCTTGAGAACATCCGCCCCGCCCACGCGCTTGCCAGCGCTTGAGAACATCCGCCCCGCCCACGCGTTTGCCAGTCAGTCGTGGAAAGGGGGGCGTGGAGAAGAGTACGGTGTGCTACGTCACAGGCGCTTGAGAACATCCGCCCCGCCCACGCGCTTGCCAGCGCTTGAGAACATCCGCCCCGCCCACGCGTTTGCCAGTCAGTCGTGGAAAGGGGGGCGTGGAGAAGAGTACGGTGTGCTACGTCACAGGCGCTTGAGAACATCCGCCCCGCCCACGCGCTTGCCAGTCAGTCGTAGAGAGGGGGGCGTGGAGAAGGGGTATGCTGGGGTACAGTCCATTGTCGTCACCCCAGAGTGGAACCTGCATGAAGCTTGGCGCTACAAATGCGAGCGCTGCAACAAAAGCTTCAAGCAAAAACAACAATTATGTTCACATATTGAAGAAGGTTGTAAAAAGAAGGGACCATTTCAGTGTCCTACATGCAACGAGAATTTTGATAATTATGTTATTTGTTGCTCAAAACTTATCACCAAAGAAATGATATTTCGTCACATCGACTTCCATGCGCTCGTAAACATTGATGGTCAGTGGTCACCCCATGATCCAGACGTAGAGTTTGTTCTACTTAGCCAATCAGCGAGCGCCTGGCATGCGTCACGTTTCCACTGCGCGCGCTGCAAGAAGAGCTACAAACACAAGAATCATCTCAGCACTCACATGAAGCACGAGTGTGGGAGGACAAATTCATTCACATGTCCGTTGTGTCACAAAAGTTTCTCTCAGAAGTATGATTATGACTTGAAATCAGTTATCAACCCTGCATGGAGCGCTGCCGAACTCTTCCACTGCGAGCGATGCGGCAGAAGGTACAAACACAGAGATGATATAGCCAATCATATCAAGCACAACTGTGTGGAAACGCAACCATTCAAGTGTTCGTCGTGTAGCACATTTTTCTCTCTGAAAAGTCAATTGACTCATCACCAAAAGTATGAGTGTGGAAAACGTTTCCAATGTCCTCGATGTAATAAGACTTACAAACGGAATGCAGCTGTGAAGCGGCACTTGAAACACGAGTGCGGTGTGAAGACATCATTCGGGTGCGTGAGGTGTCACAAAACATACAAGACGATGCGCAGTCTGAACGCCCATGCTAAATACGAGTGTGGAAGAGAGTTGTCTCACCAGTGTTCGAAATGCTTCAGAAGATTCACGCAGAAACGTCGTTTGACTTACCACGTGAAGCATGAATGTGGCGTGGTGTTTTCGTGTCCGCTTTGCAATCATGGTTTCAACCACGTCGCTGGCGTGGAGTCCCTGATAGTGAGTCCTGACTGGAACGTGTCTGATTTCTCGCGGTTCCAATGCGCGCGCTGCCACAAGAGCTACAAGCACAGACACAACCTTTACAGGCATGTCAACCACGAGTGCGGCAAGATCGGATCCTACAAGTGTCCTTCGTGCAGCTCGTGTTTCTCCCTCAAGGAAAACCTGACACGACACATGAAGCAGGATTGTGGTAACTCATTCCATTGTCCGAACTGTGCGAAAGTGTACACGTCGAAGAAGAGTGTGTATCAACACGTAAAGTATGAGTGTGGTAAAAATTTGTCGTTCAAATGCCCGGATTGTGGTAGAAGTTTCTCGAGGAAACCCAATCTTACGCGTCACATGATCGAGCGTGGTTGTCGCTTGCTGATCCCGATACTAGAATAA
Protein Sequence: MRLRTSAPPTRLPALENIRPAHAFASQSWKGGRGEEYGVLRHRRLRTSAPPTRLPALENIRPAHAFASQSWKGGRGEEYGVLRHRRLRTSAPPTRLPVSRREGGVEKGYAGVQSIVVTPEWNLHEAWRYKCERCNKSFKQKQQLCSHIEEGCKKKGPFQCPTCNENFDNYVICCSKLITKEMIFRHIDFHALVNIDGQWSPHDPDVEFVLLSQSASAWHASRFHCARCKKSYKHKNHLSTHMKHECGRTNSFTCPLCHKSFSQKYDYDLKSVINPAWSAAELFHCERCGRRYKHRDDIANHIKHNCVETQPFKCSSCSTFFSLKSQLTHHQKYECGKRFQCPRCNKTYKRNAAVKRHLKHECGVKTSFGCVRCHKTYKTMRSLNAHAKYECGRELSHQCSKCFRRFTQKRRLTYHVKHECGVVFSCPLCNHGFNHVAGVESLIVSPDWNVSDFSRFQCARCHKSYKHRHNLYRHVNHECGKIGSYKCPSCSSCFSLKENLTRHMKQDCGNSFHCPNCAKVYTSKKSVYQHVKYECGKNLSFKCPDCGRSFSRKPNLTRHMIERGCRLLIPILE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -