Bris034664.1
Basic Information
- Insect
- Brachyptera risi
- Gene Symbol
- -
- Assembly
- GCA_964007535.1
- Location
- OZ023338.1:6514274-6517435[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 1.6e-05 0.0014 20.0 0.8 2 23 352 373 351 373 0.97 2 13 6.7e-06 0.00059 21.2 1.2 2 23 384 405 383 405 0.97 3 13 0.00051 0.045 15.3 4.2 1 23 411 433 411 433 0.97 4 13 7e-05 0.0062 18.0 1.3 2 23 440 463 439 463 0.92 5 13 0.00061 0.054 15.1 3.3 1 23 469 491 469 491 0.97 6 13 8.9e-05 0.0079 17.7 3.3 1 23 497 519 497 519 0.96 7 13 6.1e-06 0.00054 21.3 2.0 1 23 525 547 525 547 0.99 8 13 0.00014 0.012 17.1 1.5 1 23 553 575 553 575 0.98 9 13 5.6 5e+02 2.6 2.9 1 23 582 604 582 604 0.96 10 13 0.0061 0.54 11.9 1.6 1 23 611 634 611 634 0.94 11 13 0.099 8.7 8.1 0.8 1 23 646 671 646 671 0.95 12 13 0.00059 0.052 15.1 0.1 1 23 677 700 677 700 0.95 13 13 4.9 4.4e+02 2.7 4.0 2 21 725 744 724 745 0.93
Sequence Information
- Coding Sequence
- ATGAATTACATTACTTCCAGCCAGCCAATCATGTCTCAAACCTTCTCGCAGTCGAGTGCATTTAAATTGGCCCTAGAGTGGGAGGATGACGACGAAATTGTGGTCAAAGTGGAGCCAATCGAAGACGGTTACGAAGAAGATGAACAAAATATAGGGCTACCAATCGACGCTGCTCGTGAGGAAGATTTAATCCCTGAAGGTGACTGGACAGCTGAAGATGACGTGATCGTCAGAAGTTTCGTCAATAAAACGAGAATTATTCCCGTCAAAAACGCTGCAAAACGAAAAACTCGTGACATCGACGAAATAACTTTTCGAGTGCAGGAAGACGAGACAATAGAATTGAACAATGAATCCTCCAACAAAATCGGCACCACGGAAGATTTTCGCCAAGAAATCATGATTTGTAAGAATGATTCAACGAGTACctattcgatattattaaatgCGACTGTTGATAGCGAATTGAGAGCAAAAGTAGAAGAATATTCGAATGAGCTATTGGGCTACTATTGTCCTAGTAGAGAGGAAGAAGATACGGAGTCTATTGACGATAGTCAGGTGGAAACCCCTACAGGATTGTCCCCGTTAATTGAATCAATGCCAGCGAACATAAGTACGACTGATGCTGGCGGACAGAAAATAATCTATCTCACAAAAGTTACCAAAGAAATGGTCTTGCAAAATGCAAAAACTGTAACCAAGTTGCCAGGAAAAGTTATGGTTCATAAATCTGACGGTCCTAATAGAAATGTTGACAAAGAAGATGTGAAAATTCCTCGGAACGTCGATAAGCGATCTATGCCTCGTAGctatttgagaaaaattgaCGATATTCGGATACCTGAAGGCCCTAGCAGCACATTTCTTCCTAAGCAAAATCTTACATCAGAGTATATTAAACATCACAATCCGAAAAGAATATTGGTTCCTATTGAAAAAGTCAGTAATCCGAAGAAAGTGGTGGTTTTAAATACTCCACAGGTTGCTAGAAACGTTGAGCGTAAAAGACGACTCGAGGCGATCCCGACGGTAGAGCAAATGTCGGAAATGGAATGTCCGACGTGTGGGAAATTATTTAGCAAAAAGAAATATCTTCTTGTTCATTTGAAGACTCACCTCGCGAAAGAACGCGAGCCGCCGTCGAAGAAGTGTGACGTGTGCGACAAAATGTTTCGAGACAACACCCAGTTAAAAATCCACTCTCGCGTCCACTCCGGCATCACACCTTACCATTGCGTACTGTGCCCGAAACAATTCAAACACCAAACAAGCCTCGCCCGACACTTGTTGTACCACACCAAAGAGCGTCCGTACTTGTGCGATTACCCAAAGTGCACGAAAACGTATCGTAACAACAGCGATTTAGTGAATCACAAACGGACACACACCAATGAGAGACCCTTCGCGTGTTCTCACTGTGGTAAAGCGTTCTCCGATCGTTGCGCGCGAAACACTCACGAACGAATCCACAATCCCATCAAGAATTACTTGTGCCCGATCTGTCGTCGTTCGTTCACGCAATCGTCCACTTTGAAATGCCACATGTTGACTCACTCGGACGAACGACCGTTCGAATGTGACTACTGCCAGAGGAAATTCAAGTCGAAAGTCGTTTTGAGAAGCCACATCCGAACGCACACCGCGGAAAAAACGTTCAAATGTACGGTGTGTTTGGAAATGTTCACGGAAAACAGAACGCTTCAAAGACATATTTACACGCACAAAGAATTTGTTAAACCATTTCCGTGCACGTTTTGTAAACGTTGGTATTTCAGAGAGAAATGTTGGAAAGCTCACGTCGAGACCCATAAGGCCATCGATCGGCCGTTCGCGTGTGATTTGTGTACGAAATGTTATCCTAACGAAGGTTATTTGAGGTTACACAAAACAAAAGCACACGGTATTGTCGTAAAGAAGAAAAGAGTGAAAGCTTATGCGTGTACCGCTTCGAATTGTAGAAATAAATTCGTGAGTCGCTTAGCTCTGAAAGCACATAAAAGGAAGAGCCATAAAAAAGATGTTCTCTTTGCGTGTGATGGTTGTAAGAAAACGTTCCCTCTAATAGCTAGTTTGGAGAAGCATATTGCTAAGAATCATATAAGTAAGCCTGATTCGgtaaaaaaaattggtaaaaGTGTGGTGAAAGTAGTGGCGACAGGAGACGAACAAAAGTGCGGTTCTTGTAAGAAATTTTTCGAGTGTAAATCGACGTTTGTCAGACATGTCAAGCGTAAATGTTGCAATTAA
- Protein Sequence
- MNYITSSQPIMSQTFSQSSAFKLALEWEDDDEIVVKVEPIEDGYEEDEQNIGLPIDAAREEDLIPEGDWTAEDDVIVRSFVNKTRIIPVKNAAKRKTRDIDEITFRVQEDETIELNNESSNKIGTTEDFRQEIMICKNDSTSTYSILLNATVDSELRAKVEEYSNELLGYYCPSREEEDTESIDDSQVETPTGLSPLIESMPANISTTDAGGQKIIYLTKVTKEMVLQNAKTVTKLPGKVMVHKSDGPNRNVDKEDVKIPRNVDKRSMPRSYLRKIDDIRIPEGPSSTFLPKQNLTSEYIKHHNPKRILVPIEKVSNPKKVVVLNTPQVARNVERKRRLEAIPTVEQMSEMECPTCGKLFSKKKYLLVHLKTHLAKEREPPSKKCDVCDKMFRDNTQLKIHSRVHSGITPYHCVLCPKQFKHQTSLARHLLYHTKERPYLCDYPKCTKTYRNNSDLVNHKRTHTNERPFACSHCGKAFSDRCARNTHERIHNPIKNYLCPICRRSFTQSSTLKCHMLTHSDERPFECDYCQRKFKSKVVLRSHIRTHTAEKTFKCTVCLEMFTENRTLQRHIYTHKEFVKPFPCTFCKRWYFREKCWKAHVETHKAIDRPFACDLCTKCYPNEGYLRLHKTKAHGIVVKKKRVKAYACTASNCRNKFVSRLALKAHKRKSHKKDVLFACDGCKKTFPLIASLEKHIAKNHISKPDSVKKIGKSVVKVVATGDEQKCGSCKKFFECKSTFVRHVKRKCCN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -