Bris036038.1
Basic Information
- Insect
- Brachyptera risi
- Gene Symbol
- -
- Assembly
- GCA_964007535.1
- Location
- OZ023339.1:2055711-2062117[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.00029 0.026 16.1 1.9 2 23 279 300 278 300 0.98 2 19 0.015 1.3 10.7 2.6 1 23 335 357 335 357 0.98 3 19 0.18 16 7.3 6.2 1 23 363 386 363 386 0.98 4 19 0.0054 0.47 12.1 3.5 1 23 392 414 392 414 0.98 5 19 0.15 13 7.5 3.4 1 23 420 443 420 443 0.95 6 19 0.0002 0.018 16.5 3.5 1 23 449 471 449 471 0.98 7 19 0.00038 0.034 15.7 3.0 3 23 479 499 478 499 0.98 8 19 0.07 6.2 8.6 0.3 1 23 505 528 505 528 0.95 9 19 0.00038 0.034 15.7 1.1 1 23 534 556 534 556 0.98 10 19 0.011 1 11.1 2.3 1 23 562 585 562 585 0.96 11 19 0.0076 0.68 11.6 0.6 1 23 591 613 591 613 0.97 12 19 0.0054 0.47 12.1 0.7 1 23 619 642 619 642 0.96 13 19 0.25 22 6.8 1.2 1 23 648 670 648 670 0.98 14 19 0.0087 0.77 11.4 4.9 1 23 676 698 676 698 0.96 15 19 0.034 3 9.6 0.8 1 23 704 727 704 727 0.96 16 19 1.2 1.1e+02 4.7 4.5 1 23 761 784 761 784 0.96 17 19 0.00026 0.023 16.2 0.1 1 23 790 812 790 812 0.98 18 19 0.024 2.2 10.0 7.2 1 23 818 840 818 840 0.96 19 19 0.0004 0.035 15.6 2.4 1 23 846 869 846 869 0.97
Sequence Information
- Coding Sequence
- ATGAACCTAGATCCCCTGGCCACGGTGAAACACGAGGGAGATCTTACAGATGCTGAAGTGAAGGACGAACAACTGGATGAGTTTGTATCAGTGGCTGCCAACAtggctgagtgtgatcccagcaagtgtggagtaacggaacagttcttagagccggctgcttcactgtatcatagtcttaccttgttcttgtctgcagtggctgctaacaagactgagtgtgatcccagcaattgtagagtaacggaacagttcttagagccggctgcttcactgtatcatagtcccaccttgttcttgtttgcagtggctgctaacatgactgagtgtgatcctagcaagtgtgaagtaacagaacaattctcagagccggctgcttcactgtatcatagtcccaccttgttcttgtctgcagtggctgctaacaagactgagtgtgatcccagcaagtgtggagtaacggaacagttcttagagccggctgctccactgtatcatagtctcaccttgttcttgtttgcagtggctgccaacatgactgagtgtgaacCCAGcgagtgtgaagtaacggaacagtttgTGAAGCCGGCCGCTTCAAGCCCGAAGCAAAGAACAGAACAGGACGGACTAATTGTCCTGAAACAGGAAGATCTAGACATCAAGGATGAATGTACATTTGAACCGGAGGAATTGGACGAGATCGCGTTCGTAGCGGTTAAAGAAGAACCAGCCAAAGACTATGGCAGCACCGGTACTGGAATGTGCTTGGAtgctacgagtgtggacaaCGCCATCATCTCCAGCAGTGTCGACAGCACGAGGGATAAGAGTAAGACTTGTACGGTGTGTGGCTTCAAGACGGCCAGCAACTCATCAATGAAGCAACACATGAAGACCCACTCGGAAGAACCTCCATTACATTGTGACGAGTGTAGCTTCAAGTGTAGAGAGAAATGTCGACTGAAGCAACATATAAAGTCTGTACATCTGAAAGACAAGACGTTCAACTGTACTCAATGTGAATTCACCTCGGCTCACGGTAATAACTTGAAGCGGCACCTGTTGACTCACATGGGAGAACAACCCTTCGAGTGCGACGAGTGTGCCTTCAAGTGTCGACACGAGTCTCGTCTGAAACATCACGTAAAGACAGCGCATCGTAAAGACAAGACGTATACCTGTACACAATGTGAATACAAGTGCGCTTTCGCCTATTACCTCAAACGCCACGCGTTGACCCACACGTTAGAGAAGCCCTTCCAGTGCACCGAGTGTGACTTCAAGTCCAGAGAGAAATGCCGTCTGACGAAGCACGTGAAGGCTGTACATCGCAAAGAGAGGCCATTTATCTGCACTCACTGCGATTTCTGTTCCGCGTACCCGAGTGACTTGAGGAGACACTTGTTGACGCACGGCAAGGAGAAACATCGCGCGTGCTCGCTGTGCAGTTATACGTGCACGAAGAATGCCAACATGGAGCGGCACATGCGAACCCACACGGGCGAGAAACCGTTCAAGTGTACAGAGTGTACTGCCACGTACAGAGAGAAAGGCATATTATCACAGCATATAAAAGCTGTACATCGGAAAGAGAAACCGTTTGTTTGTACGCTATGTGATTATACCTCTGCGTTCGCCTCGTACCTCAAGCGACACACCTCGACTCACAAGGGAGAAAAGCCCTACGAGTGTGGTCAATGTAACTACAAATGTAGAGAGAAATTTAGTTTATCACAACATATCAAGGCTGTGCATCTCAAAGAGAAACCGTTCATCTGTGCAAAATGCGAGTTCACTTCTGCTAGTGGGAAGAGCTTGAAACGTCACATGATGTCGCACACGGGAGAAAAGCCCTTCCGGTGCGGGGAGTGTCACTTCATGTCCATAGAGAAAAGTAGTCTAGTGAAACACATAAAGGCAGTGCATCTGAAAGAAAAGCCATTTTCGTGTACTCGGTGTGAATTCTCTTCGGCCAACGCTGGCGGTTTGAGATGCCATATGTTGACGCATGCGACGGTGAAACCTCACGCGTGTCCGTTGTGTAGTTATTCATGTATACGAAACAGTCACATGGATAGACACCTGTTGACACATACTGGCAAGAAACCTTTCCAATGTATCGAGTGTAACTTCACGTCTAAAGAGAAAGGTAGTCTAACGAGACACGTGAAGTCTGTACACGGCAACGAAAAGACGTATAAACGTAAGAAATGCAAGCTCTCTTTGCCCAATGGGAGGAGCTCGAAGCGCCGTATACTGACTCGGATCCTAGAACAAACATTCCAGTGTGGCGAATGTATCTACAAATGTATAAAGAGAATTCATCTAACACATCACATAAAAGCGGTACACCTTAAAGAGAATCCGTTCATTTGTACTGAATGTGAGTTTTCTTCGGCTAATGCTGGCGACCTGAAGAGACACTTGTTAACGCACGTCACCGTGAAACTCCACGCATGTTCGTTGTGCAGTTACACGTGTACACGGAACAGTCACATGCAAGCACACAAGTTGACACACACTGGGGAGAAAGCCTTCCAGTGTGGCCAGTGTGGTGTCAAGTGTAGGAAGAAAGGTCATCTAGTGAGACACATTGTAACAGTTCACCTCTGA
- Protein Sequence
- MNLDPLATVKHEGDLTDAEVKDEQLDEFVSVAANMAECDPSKCGVTEQFLEPAASLYHSLTLFLSAVAANKTECDPSNCRVTEQFLEPAASLYHSPTLFLFAVAANMTECDPSKCEVTEQFSEPAASLYHSPTLFLSAVAANKTECDPSKCGVTEQFLEPAAPLYHSLTLFLFAVAANMTECEPSECEVTEQFVKPAASSPKQRTEQDGLIVLKQEDLDIKDECTFEPEELDEIAFVAVKEEPAKDYGSTGTGMCLDATSVDNAIISSSVDSTRDKSKTCTVCGFKTASNSSMKQHMKTHSEEPPLHCDECSFKCREKCRLKQHIKSVHLKDKTFNCTQCEFTSAHGNNLKRHLLTHMGEQPFECDECAFKCRHESRLKHHVKTAHRKDKTYTCTQCEYKCAFAYYLKRHALTHTLEKPFQCTECDFKSREKCRLTKHVKAVHRKERPFICTHCDFCSAYPSDLRRHLLTHGKEKHRACSLCSYTCTKNANMERHMRTHTGEKPFKCTECTATYREKGILSQHIKAVHRKEKPFVCTLCDYTSAFASYLKRHTSTHKGEKPYECGQCNYKCREKFSLSQHIKAVHLKEKPFICAKCEFTSASGKSLKRHMMSHTGEKPFRCGECHFMSIEKSSLVKHIKAVHLKEKPFSCTRCEFSSANAGGLRCHMLTHATVKPHACPLCSYSCIRNSHMDRHLLTHTGKKPFQCIECNFTSKEKGSLTRHVKSVHGNEKTYKRKKCKLSLPNGRSSKRRILTRILEQTFQCGECIYKCIKRIHLTHHIKAVHLKENPFICTECEFSSANAGDLKRHLLTHVTVKLHACSLCSYTCTRNSHMQAHKLTHTGEKAFQCGQCGVKCRKKGHLVRHIVTVHL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -