Bris024008.1
Basic Information
- Insect
- Brachyptera risi
- Gene Symbol
- -
- Assembly
- GCA_964007535.1
- Location
- OZ023333.1:9387486-9409931[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 4.7e-05 0.0042 18.5 0.8 1 20 49 68 49 70 0.95 2 13 0.053 4.7 8.9 2.1 1 21 78 100 78 101 0.95 3 13 3.1e-06 0.00028 22.2 2.6 1 21 141 161 141 162 0.97 4 13 0.0028 0.25 13.0 1.4 2 22 171 191 170 195 0.93 5 13 2.5e-05 0.0022 19.4 1.9 1 21 233 253 233 254 0.96 6 13 0.00049 0.043 15.4 2.5 1 21 262 282 262 283 0.96 7 13 1.6e-05 0.0014 20.0 0.3 1 20 316 335 316 337 0.95 8 13 0.005 0.44 12.2 4.5 1 21 366 386 366 387 0.95 9 13 0.00031 0.028 16.0 2.2 1 23 395 418 395 418 0.96 10 13 0.52 46 5.8 1.1 8 21 419 432 418 433 0.87 11 13 0.0037 0.33 12.6 0.2 3 23 443 464 441 464 0.97 12 13 0.075 6.7 8.5 0.8 3 21 609 627 607 628 0.92 13 13 0.022 2 10.1 3.7 2 23 636 658 635 658 0.96
Sequence Information
- Coding Sequence
- ATGCACATAGCCATCGGATTCAAGTATTGTCAAGTTACTCATCGGGGTAACGGTTTCAATCTTGATTCTATTCTAGATAACGAAGACCACTCGGCACTGAACCCAATCTTCCCGTTCATCAACGTGCAAGGCAGCGGGAAAATCTTCTACTGCCAAGTGTGTGGCAAGTCTTACAAGTATGCCAACACCCTGCAACGGCATCTGAGCTACGAGTGTGGAAAAAGCAGAAAGTTTCCTTGCCCGTTTCCGAAATGCACGTACAAGGGAAAACGCTATGACCATTTGACTCAGCATTTGCGTCACAAGACCCCTCGCTCGGCCGGTAACATAATGCGTTTCCTCAAGGACCAGTCTGTGAGGGTGTACCACGATCTCGCTTCCTCTCATGGGAGTCCCCCAGGGCTGCGTCGTTGCAAGTCGTACTCGTGTCAGAGTTGCGGCAAGAGCTACACTCAGAAGTACAACTTGACCAGTCACATGCGTCATGAGTGCGGGAAACCGGCAACTCTTCAGTGTCCGTACTGCGCGCACAAATCCAAGCTCAAATCCAATTTGAAACAGCATATGAAGATATTTGATGTCCACTCTCGCTCACCTGGTGATATGGCACGCTTCATCACCGATCAGTCACTGGATGTGTATCAAGGTCTTTCTTCCTCGCAGTATCCCTCAACTGAGCGTCCCAAGTCAATCACATTTCCTTGTCCGAATTGTTACAAAAGCTACACGCAGAGATACAATCTCACGAGTCATTTACGTCACGAGTGTGGAAAGTTGCCAGGATATCAATGTCCTCACTGTGTCTATAAAGCCAAGCAGAAGTCGAACCTTACGAGGCATGTTAAACATAGTCGGATTTCCATGTTTATCGACTATTCAGAAGCGCTGAAGTATCACCTCAAACTACCTGTAGATCAACTACAGATGGTTGGTGAAACGCATGTTTTCGTTTGTCCCAACTGCGGCCGCAAGTACAAGAACAAGCCGTCGCTTACAAGACACCTGGCGTACGAGTGTGGTTGTGCTTTGGCTTGGGACGCTAGTGGCTACGATGTGCGTGATGATGGCAGCAACATCGAAGTTGTAAACAGACCGTTCAGTTGTCTCCAATGTAGCAAGAGTTACATACACAAGACGCACCTGTACAGACATCTAAAGTATGAGTGTGGCAAACAACCACAATTCCAATGTCCGCATTGCCCGTATAAAGCGAAGCAACGAGCAAACCTGAAATCGCACGTGCATAAAGTGCATATGTGTTACATGCGCAAGGACCACCTCAAGCGGCACATGAATTATGAATGTAGGAAAAATCCGACATTTGGATGTAGTTCCTGTCCTTACGTCGCGAAGCAATTGTACACACTGAGACGTCACATCAATACTGTACATCGTACAATGATTCAGAATATGCAGATCTGTGCATCTGTCTGTACATCTCTTAACGCATCTTTCGCGCTCACTCTGCCGCGGGTTGACGAGATGCCTCTGCCACAATTCCGCACCTCCTCTCCCTACCTCACCAACCGCCTCTCCTCACATCGCGTAGCTGACAGAACCTTCTTTCTCGGCGGTCGACACAGGTCCTCAGCTCACCTGAAGCCTTCCTCGCCCACCAAGATGATGGTCGGGGAGTGCCCCTTCTGCAGGAGCAGAATCCTCGGCATTGGAACAGAGACGTCTTTAGGGTCACCACCGTGGCCAGCAGATCACCAGTTGGTATCCGGATTGAATCTACGAAATTTCCAATATGGGAAACACCAAACAAAAAGTAGTTATGCTCTATTGCAACGTGACGTGCATCGTATCGAGTCGAAATTGGCCTGTCGAAATTGTGACAGGTATTTTCTGaccagcgatcatttgttccgCCACGTGCAGTATGAGTGTGGAATACCGAAGCTTCGATGCGCGCTGTGCCCGTTTTGCACACGGCGAGAAGACTCACTGAAGCATCATGTACTAACGAAGCATTAA
- Protein Sequence
- MHIAIGFKYCQVTHRGNGFNLDSILDNEDHSALNPIFPFINVQGSGKIFYCQVCGKSYKYANTLQRHLSYECGKSRKFPCPFPKCTYKGKRYDHLTQHLRHKTPRSAGNIMRFLKDQSVRVYHDLASSHGSPPGLRRCKSYSCQSCGKSYTQKYNLTSHMRHECGKPATLQCPYCAHKSKLKSNLKQHMKIFDVHSRSPGDMARFITDQSLDVYQGLSSSQYPSTERPKSITFPCPNCYKSYTQRYNLTSHLRHECGKLPGYQCPHCVYKAKQKSNLTRHVKHSRISMFIDYSEALKYHLKLPVDQLQMVGETHVFVCPNCGRKYKNKPSLTRHLAYECGCALAWDASGYDVRDDGSNIEVVNRPFSCLQCSKSYIHKTHLYRHLKYECGKQPQFQCPHCPYKAKQRANLKSHVHKVHMCYMRKDHLKRHMNYECRKNPTFGCSSCPYVAKQLYTLRRHINTVHRTMIQNMQICASVCTSLNASFALTLPRVDEMPLPQFRTSSPYLTNRLSSHRVADRTFFLGGRHRSSAHLKPSSPTKMMVGECPFCRSRILGIGTETSLGSPPWPADHQLVSGLNLRNFQYGKHQTKSSYALLQRDVHRIESKLACRNCDRYFLTSDHLFRHVQYECGIPKLRCALCPFCTRREDSLKHHVLTKH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -