Bris004412.1
Basic Information
- Insect
- Brachyptera risi
- Gene Symbol
- -
- Assembly
- GCA_964007535.1
- Location
- OZ023326.1:54496505-54508210[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.64 57 5.5 0.1 1 23 145 168 145 168 0.94 2 14 0.011 1 11.1 0.3 2 23 175 196 174 196 0.97 3 14 5.6 5e+02 2.6 0.2 2 10 279 287 278 288 0.92 4 14 1.5e-05 0.0013 20.1 2.3 1 23 307 329 307 329 0.97 5 14 0.00073 0.065 14.8 0.5 2 22 335 355 334 357 0.88 6 14 0.00017 0.015 16.8 1.9 1 23 363 387 363 387 0.96 7 14 0.00034 0.03 15.8 7.6 1 21 393 413 393 415 0.95 8 14 8.7e-05 0.0077 17.7 0.0 1 23 429 452 429 452 0.95 9 14 0.02 1.8 10.3 0.5 1 17 458 474 458 475 0.94 10 14 0.008 0.71 11.5 5.1 1 23 483 506 483 507 0.91 11 14 0.00026 0.023 16.2 1.4 1 23 512 534 512 534 0.97 12 14 4.5e-05 0.004 18.6 4.2 2 23 541 562 541 562 0.98 13 14 0.14 13 7.6 1.2 1 20 568 587 568 589 0.87 14 14 0.00018 0.016 16.7 0.2 3 20 602 619 602 621 0.96
Sequence Information
- Coding Sequence
- ATGGATGCTGAGATCAGTGTGAGATTAGATTTACATAAAATTTGTCGCCTCTGTATTCGTGAGAATGATAATTTATCGTCTATATTCGAAGCAGCGCTGCCCATTCGAATCTTTGAATGTTTGTCACTTGAGgttTATTATAACCTAACTGACTCGCCATCGTTGCGCGCAGTCGATTTAGTAGTCTACTACTTCTTGAGATCCGTCGTACACGCTTGGCCGCTAGATGTAGTTGAAGTATTGGTGAAAAACGAGAAACAATTCAGCTGGGATAATGAAAGTGATGGAGACGATTACCAGTACGACGCTTACCCAGATTCTTTTGATGATAAAGCCAACAGCAGTGATAAATACTTTGATATTAATACTCCAGTTGGATATTCCAACAATACAGAAATTAATCCTTCCACATCTAAAATTTCCCAATTGGGATTCTTCTGTAAGCCTTGCAACATAAGATTTGAAGAAGAGCCATTACTTGTCAACCACAAACGCATTATACATAATGGTAACAAAGAACTTTCCTGTTTTTACTGCAACGAAGTTTCCGATTCTGCTATTGCATTGATACACCATGAACGAACACACCGTGAAAAGCCAAAACGTAAAAAGGTGGTTAAATGTAAACCCCAACGTAAACGAAAAAAGTGGTCGAGACGAAGAAAAAAAGATTCATTTTCGGAAAGCGACGAAACGTCCAGTTCTGAAGATGACGACGATGAAGGAGAACAAGAAGAGGAAGATGCAGCTGTGAAGGTTGAGGAAATGAAGCCCGAGGAAGATGACTCTAAGTCGGACTTTGTGGCCCCAGTAATTAATAAGAAGGGAAAGCAAGTTTGTCTCGTTTGCGGTAAAAAGTTTCTATGTATGGCAGTGCTTGTAACCCACGAACGACGTGTCCATTTAGGTGAACCAGTGTTCCAGTGTCAAGTGTGTAATAAAAACTATACAACAAAACGGACACTCACTACTCATATGGGTTCTCATAATAAGGAAGCAATTCCATGTGATGTGTGTGGGAAGAAATTTTCTCACAAGACGTTAATGGCTCAACATAAAGTTCTCGTTCACAGTCTTGTTAAACCATACTCATGTACATTTAAAGGTTGTACAAAATCTTTTATCAGACGTTATATGTTGAAAACGCATCAAGTTGTGCACACGAAAGAAAAGAATTTTAATTGTGAACACTGCCATAAAAATTTCTCACGACGTGAATCACTTAAAGTTCATATTCGATGCCATTCCAGTGAGCCTGTCGTCAAGTACGTACCTCCTAGACGCTACATTTGCACTCTCTGCGGTAAAGACTATATTTCACCCGGTGAACTCAACAGACACGAACTTGTCACTCACAAAGGAGAGCGACCTTTCAAGTGTGACCAATGTGATAAAGGATATGCATCGAAGTTCTCTCTACAGGCTATCCACCAATCAGAACGTAATCACATATGCGAGTTGTGCGGTAAGAGTTTCAATCACAGCACAAGACTCAGTCAGCACAAGTCTCTGGTTCATCATCAAGGAAAGCCGTTCAAGTGTTTCATATGTTCAAAGTCGTTCCTAAAGCCGTCGTTACTCAAGAAACACCAAGTGGTGCACACTGGCGAGAGATGCGAGAAGTGCCACAAGTGTGAGAAGACATTTGGGACTCGCGAAGGTTTGAAACAACATTTGAAGACACACGCAGAAGTAAAACGTTTTGTCTGTATTTCGTGCAATAAGCGTTTTGCCGTCAACAAGTCCTTGAAAGCACACAAATGCGATGGAAAACCATACGTAGACAAAGAGAAAAGCGTCGGTTGCCCGACGTGCGGGAAGATGTTTATTAGCAAAAAAACACTCGGTCGACATATGACACTTCAGAGATGTGCTGTAGTACCGGTACCGGTGCAGCAACACATTTCTTGTTAA
- Protein Sequence
- MDAEISVRLDLHKICRLCIRENDNLSSIFEAALPIRIFECLSLEVYYNLTDSPSLRAVDLVVYYFLRSVVHAWPLDVVEVLVKNEKQFSWDNESDGDDYQYDAYPDSFDDKANSSDKYFDINTPVGYSNNTEINPSTSKISQLGFFCKPCNIRFEEEPLLVNHKRIIHNGNKELSCFYCNEVSDSAIALIHHERTHREKPKRKKVVKCKPQRKRKKWSRRRKKDSFSESDETSSSEDDDDEGEQEEEDAAVKVEEMKPEEDDSKSDFVAPVINKKGKQVCLVCGKKFLCMAVLVTHERRVHLGEPVFQCQVCNKNYTTKRTLTTHMGSHNKEAIPCDVCGKKFSHKTLMAQHKVLVHSLVKPYSCTFKGCTKSFIRRYMLKTHQVVHTKEKNFNCEHCHKNFSRRESLKVHIRCHSSEPVVKYVPPRRYICTLCGKDYISPGELNRHELVTHKGERPFKCDQCDKGYASKFSLQAIHQSERNHICELCGKSFNHSTRLSQHKSLVHHQGKPFKCFICSKSFLKPSLLKKHQVVHTGERCEKCHKCEKTFGTREGLKQHLKTHAEVKRFVCISCNKRFAVNKSLKAHKCDGKPYVDKEKSVGCPTCGKMFISKKTLGRHMTLQRCAVVPVPVQQHISC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -