Bris028945.1
Basic Information
- Insect
- Brachyptera risi
- Gene Symbol
- -
- Assembly
- GCA_964007535.1
- Location
- OZ023335.1:20005383-20017156[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.0002 0.018 16.5 2.0 3 23 185 205 184 205 0.98 2 19 0.013 1.2 10.9 8.3 1 23 211 233 211 233 0.99 3 19 1.6e-05 0.0014 20.0 2.8 2 23 240 261 239 261 0.97 4 19 0.0087 0.77 11.4 7.0 1 23 267 289 267 289 0.97 5 19 9e-07 7.9e-05 24.0 1.4 1 23 295 317 295 317 0.98 6 19 0.0074 0.66 11.6 2.4 2 23 324 345 323 345 0.97 7 19 0.0029 0.26 12.9 4.7 2 23 352 373 351 373 0.97 8 19 0.028 2.5 9.8 6.7 1 23 379 401 379 401 0.98 9 19 0.0005 0.044 15.3 4.3 1 23 407 429 407 429 0.97 10 19 0.027 2.4 9.9 0.6 1 17 435 451 435 452 0.95 11 19 0.0066 0.58 11.8 2.8 1 23 617 639 617 639 0.98 12 19 0.045 4 9.2 3.0 1 23 645 667 645 667 0.98 13 19 1.2 1.1e+02 4.7 3.2 1 23 673 695 673 695 0.96 14 19 0.14 12 7.6 1.0 1 23 701 723 701 723 0.97 15 19 0.0037 0.33 12.6 7.7 1 23 729 751 729 751 0.98 16 19 0.0043 0.38 12.4 3.8 1 23 757 779 757 779 0.98 17 19 1.2e-05 0.0011 20.4 3.5 1 23 785 807 785 807 0.99 18 19 1.6 1.4e+02 4.3 1.2 1 23 814 836 814 836 0.90 19 19 0.00018 0.016 16.7 2.9 1 23 863 886 863 886 0.96
Sequence Information
- Coding Sequence
- ATGGACCAGGATATGCCAGGCACAGTGAAACGAGAGGAAGATCATTCGGATACAGTAATGAAGGACGAAGCACGGGATGAGGACGAATTAGGGGCCACTGACAAGACCGAGtatgatcccagcaagtgtaaCGCAACGGAGCAGTTCTGTGAGCCAGCCACTTCGAGCACGGAGCAACGAATACGACAGGATGAACCCCTTGTACTGGAACGGAATGAGCCggatataattgatgaatgtgCATCCGAGTCGGAGGAATTAGACGAGATAGCTTTCGTGGCGATTAAAGAAGAACCAGCTTATGACTTGACTTATAACCAAGCAGATGTTGATACCAGCAAAATGGAAACTACAGAGAATGTTATGGAGCAAAATACGAACAAAGACTGTGTGCCATCAATCCTACCACAAACGTCGtctacgagtgtggacaataACACGAAACCTGAAGAGGCTGTCACTTCTGGAATGAAAAGCAAGAAAGGAAATTCGACTGAGAAAGTCAAGAAAATAAAAACTAATAATAAGAATGTCACTACCTCGTCTACTCTTTGCAGCGTGTGTGGTTATAAGGCCACCAGACGCGACCATCTCAAGACTCATATGATGTCCCACACCGGTGAACATCCGTACCAGTGCACGGAATGTACGTTCAAGTGCCGTCATGTAGCTCATTTAACGACACATATGATGAAACATACTGGTGAACTGCCATTACAATGCACGGAATGTGTTCATAAGTTCACCTCGTCGAGTAGTCTAAAGAAACACATGATGGTACATACTGGAGAAAAACCATTTCACTGCACCTTATGTCCGTACAAGTGCAGAACGTCAACCGGTTTAAAACACCACATGTTGATTCATACACACGAGCAGCCATTCCAGTGCTTGGAATGTTCTCGAAAGTTTAGCAGGCCGTCTAGTTtgaaaaaacacctgatgataCATACTGGTGAGAATCCATTACAATGTAAAGAATGTTCTTATAAGTGCAGAGACTTGAGTAGTATAAGAAAACACGTAATGATACACACAGGGGAAAAACCACTACAGTGTAAGACGTGTTCTTATAAGTGCAGAGACTCGACTAGTCTGAAAAGGCACACGATGGTACATACCGGTCAAAAACCTTTTCAGTGCAGGGAATGTTCTTTCAAGTGCGGAACATCTCATAATCTGAAGAAACACGTGCTGAGGCACACCGGTGTAATGCCATTCCAGTGCAAGGTTTGTTCTTATACGTGCAGATCAGCAAGTTATCTTAAAGAACATATGTTCAATCATACTGGAGAGCAGCCTTTCCAGTGTGAAGAATGTCCTTATAAGTCTACTCGATCGTATAATCTGAAGGTTACGATGTTGGCAACAAAGAACTGCAATCGTAACATCATGACAACGGATCGCAACCTCTTCCACTCCACGGTTGCATCAAGAGTTCCAGACGATATAGGCTCAGACGTTGTCCTACTTCCTGTTATTAAACAGGAAACAGAAGAAATCGAGGAAGACGCTGAATCTGACATGGATGATTTCGATGCTTTGGTTTTGAATACTTTGAAGGAAGAGTCAACTTATGAACCACCCAGAAGCCAGGCAGATGCATCACATGAAGACATGTACAAAGAAGCCGAGTATTTTCTCAAGAAAGAAACACTCACCGCGAACCCAGGGCAAACTGTTGTGCCAGGAACATCACAGCGTGCACACCGTATAATGGTTCCTCTAATTGTGAGACTTGACTATGGCGTGAAGAAAGAAACAGAAAAACTGACAGATAAGAAAGAGACACAAAAATTAACCGGCAAGACTTCAAGAAGAAAAGCTTCTAAAGGGACCAAATCTATCTATACTTGCAAGATATGTGATTACAAATCTATTAAATTATTCCATTTCGAACGTCACGTAGCGACTCATTCAGCTGACCCGTCGTTCAAGTGCGACAAGTGTTCGTACCAGTGTCGTCTGAAAGAATATATAGCACGTCACATGTTGATACATACCGAAGATAGGCCTTTCAGTTGTCAGAAATGTGCGTACACGTGTAAAAAGAAGAATATTCTGAATCGTCACGCACTGATACACGCAGAGGAGCCGCTATACAACTGCGCAGAATGTCCGTTCAAGgccaatttgaaaatatatctagCTCGTCACATGTGCTCGCATACTGGCGATTATCCTTACAGTTGCCAGGAATGCAAGTACAAGTGTAAACGGAAACAACATCTCATTCTTCACATGTCGAAACATAGTAACGAACTGCCTTTCGAGTGCAAGAAATGCTCGTTCACCTGTCGACAGATAAAAGATATGGAACGTCATATGGCAACTCACGCTGGCGTAATGCCATTCAAATGCAAGATATGCGAATGTGAGTACATTCGTTCTGATAATTTAAAGCGTCACATGTTGAAACATAAGCCTGTTAGCAAACTGTTTGAGTGCAAAGTATGTGCAAGTGAGTTTTCGCGTATGGATGAATTGAAATGTCACGAGCTGCTGCATGCTGATGAACAACTGTTCAATTGCCGAGAGGAAGCGGATCTAGCGCATCATGGGTTGACACATACCGACGAACTGCCTTTCGAATGCCTTGAATGTGGATTTAGATACCGTCGTGTTGAACATCTAAAGCGTCACATGTCGAACAAGCATGGAGTCAGCTGA
- Protein Sequence
- MDQDMPGTVKREEDHSDTVMKDEARDEDELGATDKTEYDPSKCNATEQFCEPATSSTEQRIRQDEPLVLERNEPDIIDECASESEELDEIAFVAIKEEPAYDLTYNQADVDTSKMETTENVMEQNTNKDCVPSILPQTSSTSVDNNTKPEEAVTSGMKSKKGNSTEKVKKIKTNNKNVTTSSTLCSVCGYKATRRDHLKTHMMSHTGEHPYQCTECTFKCRHVAHLTTHMMKHTGELPLQCTECVHKFTSSSSLKKHMMVHTGEKPFHCTLCPYKCRTSTGLKHHMLIHTHEQPFQCLECSRKFSRPSSLKKHLMIHTGENPLQCKECSYKCRDLSSIRKHVMIHTGEKPLQCKTCSYKCRDSTSLKRHTMVHTGQKPFQCRECSFKCGTSHNLKKHVLRHTGVMPFQCKVCSYTCRSASYLKEHMFNHTGEQPFQCEECPYKSTRSYNLKVTMLATKNCNRNIMTTDRNLFHSTVASRVPDDIGSDVVLLPVIKQETEEIEEDAESDMDDFDALVLNTLKEESTYEPPRSQADASHEDMYKEAEYFLKKETLTANPGQTVVPGTSQRAHRIMVPLIVRLDYGVKKETEKLTDKKETQKLTGKTSRRKASKGTKSIYTCKICDYKSIKLFHFERHVATHSADPSFKCDKCSYQCRLKEYIARHMLIHTEDRPFSCQKCAYTCKKKNILNRHALIHAEEPLYNCAECPFKANLKIYLARHMCSHTGDYPYSCQECKYKCKRKQHLILHMSKHSNELPFECKKCSFTCRQIKDMERHMATHAGVMPFKCKICECEYIRSDNLKRHMLKHKPVSKLFECKVCASEFSRMDELKCHELLHADEQLFNCREEADLAHHGLTHTDELPFECLECGFRYRRVEHLKRHMSNKHGVS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -