Bris024154.1
Basic Information
- Insect
- Brachyptera risi
- Gene Symbol
- lola
- Assembly
- GCA_964007535.1
- Location
- OZ023333.1:11307301-11316391[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.0015 0.14 13.8 5.7 1 20 29 48 29 50 0.95 2 15 8.2e-05 0.0073 17.8 0.6 1 23 58 81 58 81 0.95 3 15 0.00056 0.05 15.2 3.6 1 20 113 132 113 134 0.94 4 15 4.7e-05 0.0042 18.5 2.0 1 23 142 165 142 165 0.98 5 15 0.00045 0.04 15.5 4.0 1 20 214 233 214 235 0.94 6 15 5.8e-05 0.0051 18.3 3.9 1 23 243 266 243 266 0.98 7 15 0.33 29 6.5 1.0 1 21 317 337 317 338 0.94 8 15 0.018 1.6 10.4 6.3 1 21 344 364 344 365 0.95 9 15 0.0064 0.56 11.8 2.4 2 21 373 392 372 393 0.93 10 15 1.1 95 4.8 0.2 3 16 403 416 401 418 0.91 11 15 0.53 47 5.8 2.9 1 19 451 469 451 472 0.92 12 15 5e-05 0.0045 18.5 0.6 2 21 481 500 480 501 0.93 13 15 0.039 3.5 9.4 0.1 1 23 510 533 510 533 0.95 14 15 0.0002 0.017 16.6 1.5 1 21 554 574 554 575 0.96 15 15 6.4e-06 0.00057 21.3 0.9 1 20 585 604 585 606 0.94
Sequence Information
- Coding Sequence
- ATGAGCCGAAGACATCTTGTACCACAGTACACCTTCACCAATGTCGATCACAGCACCACAAATATGATGGCGACTAATCGGCCATTCATGTGTCAAGACTGTGGGCGCAAATACAGGCACAAGCAACATCTCAAGAGCCACAGAACCCATGAATGTGGGAAGCAACCTCAATTTCAATGTCCGTATTGCCCGTCAAAGTCGAAACGAGAGTCGAATTTAAGGAAACATGTTAAGGCGATTCATAAGATTGACATCCcagataataATCCTATGCCGCAGTTCACCTTCGCCAATGTCGAACAATACACTCCAAATAGGAAAGAGACTGATCGGCCATTCATTTGTCAAGATTGTGGGCGCAAATACAGGCACAAGCAACATCTTAACAGTCACAGAACCTATGAGTGTGGTAAACAACCTCAATTTCAATGTCCGTATTGCCCGTTGAAGTCGAAACTCAAGTCGAATCTAAAACAACATATCAAGAAAAAGCATCAGATGGACATTGtagataatattaataatagtgTTAATGATGCATTTTTGTTCAACGATTCAACCACCAATAGTTCCGTGCCACAGTTCACCTTCGCCAATGTTGATCAATACACCTCGCATGGAGAAGCAATTGATCGGCCATTCATCTGTCAAGATTGTGGGCGTAAATACAGGCACAAGAAACATCTTAACAGCCACAGAACCTATGAGTGTGGAAAACAACCTCAATTTCAATGTCCGTATTGCCCGTCAAAGTCGAAACATAAGTCGAATTTGAAACAGCATATAAAGAAGATGCATCAGTTGAACTTTCTTAATAATAGTGATAGCAGTGTTGTTGCAGTTGTTCCTGCGATGCACTTTGTGAACATTGAGAACTTTGACAATGTTTACGAACAATCACCATCGACGTCATTCCAGTACCTACCTGTTGCTGAGAATACTTTCAAGTTCTCCTGTGACGGCTGCAGCAGTAAATACAAACGTGAACAAGACCTTGTTTATCACAAGAAGAAAGAATGCGGAATTGTATTTCATTGTACTGGTTGTCCCAGAAAGTTCAATCACAAATGTACATTGACTACACACTTGAATTTTGAGTGTGGAAAAGCAATGTTGGAGTGTGAGGTGTGTCAGaagaaatataaacataaaacGTCGTTGTACAATCATAAGAAATACGAGTGTGGAAAAGATCCACATATCGCATGTCCTTATTGTCCCCATAAAGTAAAGCGTAAAGCCCACTTTGATTCCGACGAATACCAATTGGCTCTTGACAACGTTGAAACGAAATGGCGTCCATTCGGTGACCCTCCCGAGTCCCTTGCAGGTCCTTCCGGAAGACCGCGTTTCTTTTGTGGGAACTGTCCGCGAAGCTACTCGGAGAAGAAGTTCTTGACATATCATAATAAGCATGAATGTGGCGAAGGAATCAAGTTGGAGTGTCCGAAATGTAAGCGGTCATTCAAGGACCTGAGCACGTTCAATCGACACACGATGATTGGTGATTGTGGTGAAGGTGGCCAGTTTGCATGTATGATCTGCGGCCTGGGTTTCCATATGAAGTGGATGTTGGCAGAACACATCGCTAAAGAACACAAGAACAATGCACGAGTGGCGACGTTCGTTAGTCAGGAAATCGATGAACATGATTCTCGATTCAAATGTCCGGCGTGTTATAAACGGTATAAACATAAAGAATCGCTTACTGCTCATATGATGTACAAGTGTAATCCGAAGAAAAAAAACCTTTTCGATTGTCCGATTTGTCACAAGAGTTACAGGAATAAAGGATCGTTAACGACGCACATGACTCAAATCTGCGGACGAGTTATTGCAATGTCCAATCAGTACGACTTGTCCAGAAACTATCATGTTGACCCTGACGACCCAGCGCACTATGGTGAACGCTCCGATCCGAGTAGAAGCGCTGGCGATAATTACGCTCCAGATCAAGAAAACAGTTATTATATTAAAACTGAGCATGCTGATCCTAGTGATAACACCGCCCAGGATGACACGTATTTCTCTCCAGTTATCAGCCACGTTGTTTCCGAATGTCCTGTTTATAATGTTTCACTTGAGCGAACACCACTTCACGACACTCCTGTCATTGACCCTTCAGTTCCATCCCCTATCTCTCATGAAGTTCCTCCTCAAAGTGGTGGCGTTTTTCAAAGTTACTCCTCTCCATCGAATATTGAATCTTTTTCAAACAATCACGCCTTCCCGGTTTCGCTTCCTGGTTCGAACCAGAACTCTGTGCAGAATGTTCTTTCTGAACACTCGTATTTTCCTGTACCAAATGATTGTCTCCACTCTCCAGCCCAGTAA
- Protein Sequence
- MSRRHLVPQYTFTNVDHSTTNMMATNRPFMCQDCGRKYRHKQHLKSHRTHECGKQPQFQCPYCPSKSKRESNLRKHVKAIHKIDIPDNNPMPQFTFANVEQYTPNRKETDRPFICQDCGRKYRHKQHLNSHRTYECGKQPQFQCPYCPLKSKLKSNLKQHIKKKHQMDIVDNINNSVNDAFLFNDSTTNSSVPQFTFANVDQYTSHGEAIDRPFICQDCGRKYRHKKHLNSHRTYECGKQPQFQCPYCPSKSKHKSNLKQHIKKMHQLNFLNNSDSSVVAVVPAMHFVNIENFDNVYEQSPSTSFQYLPVAENTFKFSCDGCSSKYKREQDLVYHKKKECGIVFHCTGCPRKFNHKCTLTTHLNFECGKAMLECEVCQKKYKHKTSLYNHKKYECGKDPHIACPYCPHKVKRKAHFDSDEYQLALDNVETKWRPFGDPPESLAGPSGRPRFFCGNCPRSYSEKKFLTYHNKHECGEGIKLECPKCKRSFKDLSTFNRHTMIGDCGEGGQFACMICGLGFHMKWMLAEHIAKEHKNNARVATFVSQEIDEHDSRFKCPACYKRYKHKESLTAHMMYKCNPKKKNLFDCPICHKSYRNKGSLTTHMTQICGRVIAMSNQYDLSRNYHVDPDDPAHYGERSDPSRSAGDNYAPDQENSYYIKTEHADPSDNTAQDDTYFSPVISHVVSECPVYNVSLERTPLHDTPVIDPSVPSPISHEVPPQSGGVFQSYSSPSNIESFSNNHAFPVSLPGSNQNSVQNVLSEHSYFPVPNDCLHSPAQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -