Basic Information

Insect: Brachyptera risi
Gene Symbol: -
Assembly: GCA_964007535.1
Location: OZ023338.1:12408127-12419485[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 21 3.6e-05 0.0032 18.9 1.7 1 23 279 301 279 301 0.98

2 21 0.028 2.5 9.8 1.3 1 23 308 330 308 330 0.97

3 21 0.1 9.3 8.0 1.8 1 23 336 358 336 358 0.97

4 21 0.00028 0.025 16.1 0.3 2 23 365 386 364 386 0.96

5 21 0.0013 0.11 14.0 5.4 1 23 392 414 392 414 0.99

6 21 0.00039 0.035 15.6 2.1 1 23 420 442 420 442 0.98

7 21 0.0016 0.14 13.7 10.3 1 23 448 470 448 470 0.99

8 21 0.13 12 7.7 2.3 1 23 488 512 488 512 0.95

9 21 0.00074 0.066 14.8 4.9 1 23 518 540 518 540 0.97

10 21 0.0015 0.13 13.8 7.4 1 23 545 567 545 567 0.98

11 21 0.032 2.8 9.6 1.4 3 23 582 603 580 603 0.94

12 21 0.02 1.8 10.3 12.0 1 23 659 681 659 681 0.99

13 21 0.015 1.3 10.7 2.2 1 23 687 709 687 709 0.95

14 21 6.5e-05 0.0058 18.1 8.3 1 23 715 737 715 737 0.99

15 21 0.45 40 6.0 1.6 1 23 755 779 755 779 0.94

16 21 0.00074 0.066 14.8 4.9 1 23 785 807 785 807 0.97

17 21 0.0012 0.11 14.1 8.6 1 23 812 834 812 835 0.96

18 21 0.028 2.5 9.8 0.3 1 23 843 866 843 866 0.95

19 21 0.0018 0.16 13.5 7.9 1 23 879 901 879 901 0.98

20 21 0.038 3.4 9.4 2.0 3 23 909 929 907 929 0.97

21 21 0.021 1.8 10.2 8.8 1 23 935 957 935 957 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	21	3.6e-05	0.0032	18.9	1.7	1	23	279	301	279	301	0.98
2	21	0.028	2.5	9.8	1.3	1	23	308	330	308	330	0.97
3	21	0.1	9.3	8.0	1.8	1	23	336	358	336	358	0.97
4	21	0.00028	0.025	16.1	0.3	2	23	365	386	364	386	0.96
5	21	0.0013	0.11	14.0	5.4	1	23	392	414	392	414	0.99
6	21	0.00039	0.035	15.6	2.1	1	23	420	442	420	442	0.98
7	21	0.0016	0.14	13.7	10.3	1	23	448	470	448	470	0.99
8	21	0.13	12	7.7	2.3	1	23	488	512	488	512	0.95
9	21	0.00074	0.066	14.8	4.9	1	23	518	540	518	540	0.97
10	21	0.0015	0.13	13.8	7.4	1	23	545	567	545	567	0.98
11	21	0.032	2.8	9.6	1.4	3	23	582	603	580	603	0.94
12	21	0.02	1.8	10.3	12.0	1	23	659	681	659	681	0.99
13	21	0.015	1.3	10.7	2.2	1	23	687	709	687	709	0.95
14	21	6.5e-05	0.0058	18.1	8.3	1	23	715	737	715	737	0.99
15	21	0.45	40	6.0	1.6	1	23	755	779	755	779	0.94
16	21	0.00074	0.066	14.8	4.9	1	23	785	807	785	807	0.97
17	21	0.0012	0.11	14.1	8.6	1	23	812	834	812	835	0.96
18	21	0.028	2.5	9.8	0.3	1	23	843	866	843	866	0.95
19	21	0.0018	0.16	13.5	7.9	1	23	879	901	879	901	0.98
20	21	0.038	3.4	9.4	2.0	3	23	909	929	907	929	0.97
21	21	0.021	1.8	10.2	8.8	1	23	935	957	935	957	0.98

Sequence Information

Coding Sequence: ATGCGAAGTGCGGCTGCTGAGAGAGCAAGGAGACATCGTGCTAATCTCACAGAAGAGCAAGCTTTTGCTATGCGAACTGCGGCTGCTGAAAGATCAAGGATACGCCGTGCTAATCTCACGGAGGAGCAGGCTTCTGCTACGCGAACTGCAGCTACCATAAGAGAAAAAAGACGTCTTGCTAATCTATCGGAGGAGCGAGCTTCCGCTATGCGAACTGCGGCTGCTGAAAGAGCAAGGATACGGCGTGCTAATCTCACGGAGGAGAAAGCTTCTGCTGTGCGAACTGCGGCTGCTGCAAGAGCAAGAAGACGTCGTGCTGATCTAAAGAAGGTACAGGCTTCCACTGTGTATGCCGCGACTGCCGTCACGACAAAGTCCATGGAAGCTGGAGATCAGGATCTACCAGGTGTCCTCGCTGACTGCAAACAGGCAGAAGTGGAAATCAAGGAGGAAACGGAACCAGAGTCAGAAGAAATGATGGATTTCCACTTCGTAGGGGTGACGGAAGAGCCACATCAAATAATTAAGGAGGAGCCCGATCCTGATTCGGAAGAAATTAACGAAGTTGCTTTTGTCGAGTTGATAGAAAAACCTCTTCAAGAATTTTTGCCCAAAGATGGCACCACTGGTGTTGACCTGAGCTTCGTGTTATACTCGCCTGTCGAGAGCATTAAGAGCGAGATGGACGTGATTTCTAGCGAGGTACCAACACAACCCCCCGTAATGCCAACCGAACAAATTGTGCCTGATTACCAGACTGTGTCAGATCCTCACGAAGTTACTTCACCATCAACTCTAATGAATCACTTGCCCGGTGCTGTCGACTACCTTCTGTTTGAGTGCAATCTTTGCTTGAGAAGATTTCAACAAATGGACAATCTGAAACGTCACATGCTAACACATACCGCTGCTGTACAGTTGTTCAAGTGCCAGCAGTGTTCGTACCAGTGCATAGAGGAAGACGACCTACAACGCCACGAAGCGATGCATACGGACAAACATCTGTTCGAGTGCTTGCAATGTTCGTATAAGTCTACGAACAAAGATGATATAAAAACGCACTTGTTTAGTCACAGCGTTGAACAACCTCTCGAGTGCGACATTTGTTCTACCAAGTTTCAATCGGAAAGAAGTCTGATTCGTCACATGCTTATTCATACTAGTGAGCCACAATTCAAATGTAGTGAGTGTTCATATCAGTGTCGATTCGGATATAATTTGAAACGCCACATGATGACTCATACGAATGAACGGCGGTTCGAATGCTCGGTGTGTGCGCGCAAGTTTCGACATAAACCTGATCTCGAACGTCATTCGTCGACACATTCGGGTGATTACCCGTTTCAGTGCACCGAGTGTGCTTATCGGTGTCACCAGAAATATCATTTAAAACGTCATATGCGAACGCACGAAGAAAAACAGCCGGAACGTAAAAAACAAACTGAAACGGAAAAGCTACCATTCGAGTGCAGCGTACCGTCGTGCACGTATCGTTGTGGATATAAACATCTTCTGAACGTTCACATGATGATACATACCAATGAACGACCGTTTGATTGCACGCGATGCACGTTCAAGTTTCGACGGAAATGTGATCTCGAACGACATATGTTGATACATGGTGATCTCCAGTTTGAATGTAGTGTTTGTGGTTATCAGTGCCGACGGAAAAATCGTCTGAAACACCACATGAAACGTCATCGTACGTTGACAGACAGGCCTGTCGATGGACAGTCGTTGGATTGCAACGAATGTGGTTTTAACTGTCAACTGAAAAGTGATCTAGAACATCATCTTGAAGTCATACACGGAAAAGAGAAACTGACTGAAACTGACGAGCTACCGTTCAAATGCAACGTATGCTCATATAAATGTCTACTGATGAACAATTTGAATTGTCACAAGTTAACGCATGGGCCTCGTGATGAACGCCCTGTTGAAAGCAAGAACGGAACTGAAACCAAAGATCTACCGTACGAGTGTGATGTGTGCGCGCATCGGTGTCGGCACAGACATCATTTGAAACGCCACATGATGACGCATACAGATAAACGGCCGTTTGATTGCCCGACGTGTGCCCGCAAGTTTCGATATAAATCTGATCTTGAATGTCACATATTGCAGCATACTGGTGATTACCCATATAAGTGCAGTGTTTGTGCGTACCGATGCCGTCAGAAGTATCATTTAAAACGTCATATGCGGACGCACGAGGAAAAACAGTCGGAATGCAAGAAACAAACTGAAACGGGAAAGCTACCGTTCGAGTGCAGCGTACCGTCATGCGCGTATCGTTGTGGATATAAACATCTTCTGAACATTCACATGATGATACATACCAATGAACGACCGTTTGATTGCACGCGATGCACGTTCAAGTTCCGACGGAAATGTGATCTCGAACGACATATGTTGATACACGGTGATCTTCAGTTTGAGTGCAGTGTTTGTGGTTATCAGTGCCGACGTAAAATTCATCTGAAATACCACATGAAACGTCATCATACGTCGACAGACGTTGAGTCGTTTGAGTGCAATGAATGTGGTTTTAACTGTCAACTGGAAAGTGATCTAGAAAGTCACGTTGAGGTTATACACAGAAAAGAGAAACTGACTGATACTGACAAAGTAACGTTCAAGTGCGAAGTGTGCTCGTATCAATGCCGCCACAATTATTATCTGAAGCGTCATATGTTGAAACATACGGGCGAGCGACCGTTCGGATGCGCCGAGTGTGCACGCAAGTTTCAACGGAAGTGCGACATCAAACGTCACATGTTGATTCATACCGGTGATCTACCGTTTAAATGCAGTGCTTGCGATTATCAATGTCGGCAGAAACATCATCTGCAGCGTCATGTTTTGAAACATGATTCCCTGATAGAAGTTGGCTTGACATAA
Protein Sequence: MRSAAAERARRHRANLTEEQAFAMRTAAAERSRIRRANLTEEQASATRTAATIREKRRLANLSEERASAMRTAAAERARIRRANLTEEKASAVRTAAAARARRRRADLKKVQASTVYAATAVTTKSMEAGDQDLPGVLADCKQAEVEIKEETEPESEEMMDFHFVGVTEEPHQIIKEEPDPDSEEINEVAFVELIEKPLQEFLPKDGTTGVDLSFVLYSPVESIKSEMDVISSEVPTQPPVMPTEQIVPDYQTVSDPHEVTSPSTLMNHLPGAVDYLLFECNLCLRRFQQMDNLKRHMLTHTAAVQLFKCQQCSYQCIEEDDLQRHEAMHTDKHLFECLQCSYKSTNKDDIKTHLFSHSVEQPLECDICSTKFQSERSLIRHMLIHTSEPQFKCSECSYQCRFGYNLKRHMMTHTNERRFECSVCARKFRHKPDLERHSSTHSGDYPFQCTECAYRCHQKYHLKRHMRTHEEKQPERKKQTETEKLPFECSVPSCTYRCGYKHLLNVHMMIHTNERPFDCTRCTFKFRRKCDLERHMLIHGDLQFECSVCGYQCRRKNRLKHHMKRHRTLTDRPVDGQSLDCNECGFNCQLKSDLEHHLEVIHGKEKLTETDELPFKCNVCSYKCLLMNNLNCHKLTHGPRDERPVESKNGTETKDLPYECDVCAHRCRHRHHLKRHMMTHTDKRPFDCPTCARKFRYKSDLECHILQHTGDYPYKCSVCAYRCRQKYHLKRHMRTHEEKQSECKKQTETGKLPFECSVPSCAYRCGYKHLLNIHMMIHTNERPFDCTRCTFKFRRKCDLERHMLIHGDLQFECSVCGYQCRRKIHLKYHMKRHHTSTDVESFECNECGFNCQLESDLESHVEVIHRKEKLTDTDKVTFKCEVCSYQCRHNYYLKRHMLKHTGERPFGCAECARKFQRKCDIKRHMLIHTGDLPFKCSACDYQCRQKHHLQRHVLKHDSLIEVGLT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -