Basic Information

Insect: Brachyptera risi
Gene Symbol: prdm10
Assembly: GCA_964007535.1
Location: OZ023327.1:7218865-7278202[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 3.9e-05 0.0034 18.8 0.4 2 23 533 554 532 554 0.96

2 14 7.6e-06 0.00067 21.0 1.4 1 23 600 622 600 622 0.98

3 14 0.03 2.7 9.7 5.2 1 23 628 651 628 651 0.97

4 14 0.1 9 8.1 0.1 2 23 664 685 663 685 0.94

5 14 0.0052 0.46 12.1 1.1 3 23 716 736 715 736 0.98

6 14 0.0002 0.018 16.6 1.4 2 23 757 778 756 778 0.96

7 14 0.042 3.8 9.2 1.0 2 23 787 808 786 808 0.96

8 14 0.0031 0.27 12.8 0.0 1 23 814 836 814 836 0.98

9 14 0.00089 0.079 14.5 0.6 1 23 842 865 842 865 0.96

10 14 0.0027 0.24 13.0 1.6 1 23 870 892 870 892 0.96

11 14 9.7e-06 0.00086 20.7 2.1 1 23 898 921 898 921 0.94

12 14 0.0036 0.32 12.6 2.0 1 23 958 981 958 981 0.97

13 14 0.0004 0.035 15.6 2.2 1 23 1003 1026 1003 1026 0.97

14 14 0.0028 0.25 13.0 3.6 3 23 1066 1087 1064 1087 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	3.9e-05	0.0034	18.8	0.4	2	23	533	554	532	554	0.96
2	14	7.6e-06	0.00067	21.0	1.4	1	23	600	622	600	622	0.98
3	14	0.03	2.7	9.7	5.2	1	23	628	651	628	651	0.97
4	14	0.1	9	8.1	0.1	2	23	664	685	663	685	0.94
5	14	0.0052	0.46	12.1	1.1	3	23	716	736	715	736	0.98
6	14	0.0002	0.018	16.6	1.4	2	23	757	778	756	778	0.96
7	14	0.042	3.8	9.2	1.0	2	23	787	808	786	808	0.96
8	14	0.0031	0.27	12.8	0.0	1	23	814	836	814	836	0.98
9	14	0.00089	0.079	14.5	0.6	1	23	842	865	842	865	0.96
10	14	0.0027	0.24	13.0	1.6	1	23	870	892	870	892	0.96
11	14	9.7e-06	0.00086	20.7	2.1	1	23	898	921	898	921	0.94
12	14	0.0036	0.32	12.6	2.0	1	23	958	981	958	981	0.97
13	14	0.0004	0.035	15.6	2.2	1	23	1003	1026	1003	1026	0.97
14	14	0.0028	0.25	13.0	3.6	3	23	1066	1087	1064	1087	0.98

Sequence Information

Coding Sequence: ATGAGAGTACAGGTGAGGGTTAGGATATTGAGGCTTGTGGGGCGGCTTGCAGGTTTTCCATTGAGAGATGCCGGCTATTATGCGGATAGCCTGTTTTTGAATAATGAAGATGCGTTTGGCTTGTTGGGGACAAGTTCCCCAGAAGAAGAGGCCATAGGAGAGGTGGGAGTGGAGATGGGCATGGTAGACAAGCTTCGGAATGTGGGGGCTGACAATGAGCTTGCGTCTACGAGGGAGGAAGCTCCCACTTTTGATTCTGTTGAGGGTGTGTTGGATGTGGATGGACCAGGGTCGAGCAATTTAATGGATATCACAGTCCCTCAGGGATTGCCAGTAGATATTGACGAAGATAATCGATTACCTCCTGAAACTATCATCGAAACGAACTTACCTGATACGGAATTGGATGACTGGACTACTCCAGTATCAAGTTGCTCCGACTTGAACCCAGGAGTCCGGAAAATAACTGTGTCTACCTCAAGATTGTTTTTGCTATCAGTTGAATTCACGGACCCAACTTTGGATTATGCTCGTTCAGCATTATCTAGTTTTGAGCCTGGGGCTGAATTCTCGCCCCAGCCGTCGACGTCGCTGTCTGACTTCGAACACAGGGTTAGCCCGCTTGACCCGAACCTCAGCTCGGCCGCGCGCTATTCTCCCGTCTACGGCAGCCTAACTACAGTCGCAAATGGCAGCGAAGAGCTACAGATGCCCCCCGCGGCTGACACTTACCACGGCGTTGTCACGACCTGTACCGCGGAAGATGGGGCGCTACTGCATCAGTACCAAAGTGTGGAGGGTGGCCAGTCGGAGGAGCTGAAAGAAGGCGAAGTGAGCCACGTGCTGACGAACATCACATACACCCTGGAGCCGTCGTCCATGTTCCAGACGCCCGAGGAGCTGAGCTTGGTTCCGTTTGACTCCGACATGGAGGCTACCATGAAGGCTGCCAACAGCAGTATGGACTTGTTGTTAGTGGATCCCTATCCTGACACGCCGGATACCACCGGCTCGGGATTTCACTCACCGGCAAGACTCGTCAAAACACAGCATGCACAAAATCAAGGTAATGAAGAATACGTGTATGATGGAAGCTGTCAATCGCTGGGGATCCAGACGATTGCTGACAAGCCAGTACCGCTAAGATCGTGGGCCACTCTACCTGCCACGTACTTGGCCATTCTCAAAATAAATGACGTTGGCAACGATTGTGGTGTGTTTGCAAGGAAGACCATACCGAAACGCACCCAGTTTGGTCCAGTTGAGGGAATACTATGCAAGCCAGTAGTAGGTAACGATAGTGATCCCAGCGTGATCAAGTTACTCCTGGAGGAAGATTCTGGAGAGATGATCAGGATTGATACTACTGATGAGAATTGCTCGAATTGGATGCGCTATGTGCGCAGTGCGTCTTGCATCAAGGAGCAGAACCTGGTGCTCAGCCAACAAGGTCACTCGTTGTACTTCACCACGACCAGAGTGATCCACCCGAGAAGCGAGCTGATGGTTGGGTACAGTCCGCCGTACGCAAAGAAGAGAGGCTTACCCGTTCTACTGCCCAATGAGACAGACACAGTTGAGTGTGACTCGAGTTGGCCTTGTTTCGAATGCAACGAACACTTTCCGACGTCTGACGACCTTCAGAAACACCTGAACGTGCATGAAACGCAGCGTGAGGACGGCGACCTGATGGCCAAGACCAAGACCAAGAAAAACATTCGTTCGTTGAAGAGGAAAATCCTTTCTCTTTACTCATCCAAGAAATATTGTACCACCATAGAAAAGCCAGAGAGTGTTTTCCAGTGCACCATTTGCGAGCGTACTTTCCCACGGATGTACAGCCTGAAGCGCCATCAACTGCTGCACGTCGACGAGGGCAAATATATATGCCATTTCTGCAACCAAAACTTCTCGCATGTCGCCAATCGCGATCGCCACATTCGCAAATACCACAGCGACGTTTTCAAAAAGAACCAGCTGGGAGAGTGGCAGTGCAGGCAGTGTTCGTTGATCTTTGAGAGCTCTGCCTTGTTGACGCTCCACTCGGAGGTCCACTCGGAGGTTCACTCGGAGGCCAGCGCGTGCTGCACGGTGACGGTGGATGGCACGCTGTACCTCGAGGGGGAGTACCTGATTGCGGCGCTGTGCCCGCAGTGCGGCCAAGAGTGCGGCGACAGGCACGAGCTGGTGCGGCACGTCGAGACGCACGCCAAGATCAGGGCCACCCGGCTCAGAGTGCGGGGCACGGTCAATCCCGCCAAGCCCTGCAAGTGTGAGCTGTGTTACAAAGCTTTTGCCACTGAAGAACGACTGCAGAGGCACATGCTGGTCCATGGGGCAGACGAGTCGAAGCCACTCGAGTGTACCGTCTGCAACAAGAGGTTTCTCAACAATTCGGCACTTGCCTGTCACATCAAGATACATACAGAAAAGAAGATGTTCGAGTGTCCGATATGCAAGATTGTTTACGACCAGGTGCTTGCTCTGAAGGAGCACGTTCGTGTTCACGCCAATGACGGTATCTTCACATGTCCGCAGTGTGCCAAGACATTTGACGAGTACAGTCTGATCCGCAAACATATCCGTGCATTTCACAGTGATCGTAAACATGACTGTTCGTACTGTGCTAAGCTGTTTCCTACATTAGACAAACTACGCATGCATATGTTGAGGCATTCTGATCATCGAGAATTCCTGTGTGCCAACTGCGGTAAACAATTCAAGCGCAAGGACAAGCTGAAGGAACACATGAAACGGATGCATTCGGCCGAGAGAGAACAGCGCTTGGCCACCAAGCCATATCGGTCTCAGCCGGCTAAGAAGTTCATACCGAAAGTGCAGATCTCGCCCAGCGATTATCACCGTTTCATCTACAAGTGTCATACGTGTTTGCTGGGGTTCAAACGGCGTGGCATGTTGGTCAACCACCTGGCAAAACGTCATCCGGACATCAGTCCCGACTCCGTGCCGGAGCTGAATCTGCCCATCCTGAAAACTACGCGTGATTACTACTGCCAGTACTGCGAAAAAGTGTACAAGAGCAGTTCCAAGCGCAAGGCTCACATCCTGAAGAATCATCCGGGAGCAGAACTGCCCATGAGTAACCGGAGAAAGGGGGGCGTGCCTGACATACCGGGCGTACCTAACCCCACCTTCTCTCAGACGGTTGGCAGTGTAACGACCTGTCCCCACGGCTGTCCCTGGTGCCACAAACAGTACGCTTCGAAAGCAAAGCTGCTGCAACATCAGCGCAAGAAGCACATGACAATGTTGCCATCGTCACAACAAGTTGCACGAGTGTTGAGGGGGCCCATGTCACCGGAGGATGCTTCCAAGAACCTCATGTCTTCAAACGGTACGTATTCCCTTGTTGCACACTTGACAGCCAGGTGA
Protein Sequence: MRVQVRVRILRLVGRLAGFPLRDAGYYADSLFLNNEDAFGLLGTSSPEEEAIGEVGVEMGMVDKLRNVGADNELASTREEAPTFDSVEGVLDVDGPGSSNLMDITVPQGLPVDIDEDNRLPPETIIETNLPDTELDDWTTPVSSCSDLNPGVRKITVSTSRLFLLSVEFTDPTLDYARSALSSFEPGAEFSPQPSTSLSDFEHRVSPLDPNLSSAARYSPVYGSLTTVANGSEELQMPPAADTYHGVVTTCTAEDGALLHQYQSVEGGQSEELKEGEVSHVLTNITYTLEPSSMFQTPEELSLVPFDSDMEATMKAANSSMDLLLVDPYPDTPDTTGSGFHSPARLVKTQHAQNQGNEEYVYDGSCQSLGIQTIADKPVPLRSWATLPATYLAILKINDVGNDCGVFARKTIPKRTQFGPVEGILCKPVVGNDSDPSVIKLLLEEDSGEMIRIDTTDENCSNWMRYVRSASCIKEQNLVLSQQGHSLYFTTTRVIHPRSELMVGYSPPYAKKRGLPVLLPNETDTVECDSSWPCFECNEHFPTSDDLQKHLNVHETQREDGDLMAKTKTKKNIRSLKRKILSLYSSKKYCTTIEKPESVFQCTICERTFPRMYSLKRHQLLHVDEGKYICHFCNQNFSHVANRDRHIRKYHSDVFKKNQLGEWQCRQCSLIFESSALLTLHSEVHSEVHSEASACCTVTVDGTLYLEGEYLIAALCPQCGQECGDRHELVRHVETHAKIRATRLRVRGTVNPAKPCKCELCYKAFATEERLQRHMLVHGADESKPLECTVCNKRFLNNSALACHIKIHTEKKMFECPICKIVYDQVLALKEHVRVHANDGIFTCPQCAKTFDEYSLIRKHIRAFHSDRKHDCSYCAKLFPTLDKLRMHMLRHSDHREFLCANCGKQFKRKDKLKEHMKRMHSAEREQRLATKPYRSQPAKKFIPKVQISPSDYHRFIYKCHTCLLGFKRRGMLVNHLAKRHPDISPDSVPELNLPILKTTRDYYCQYCEKVYKSSSKRKAHILKNHPGAELPMSNRRKGGVPDIPGVPNPTFSQTVGSVTTCPHGCPWCHKQYASKAKLLQHQRKKHMTMLPSSQQVARVLRGPMSPEDASKNLMSSNGTYSLVAHLTAR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00242503;
90% Identity: -
80% Identity: -