Basic Information

Insect: Brachyptera risi
Gene Symbol: -
Assembly: GCA_964007535.1
Location: OZ023328.1:40716814-40727448[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 0.097 8.6 8.1 0.9 3 21 6 25 4 26 0.85

2 17 0.095 8.4 8.1 0.7 3 20 33 50 31 52 0.92

3 17 0.056 5 8.9 1.8 6 21 75 90 70 91 0.88

4 17 0.078 6.9 8.4 0.6 3 21 98 116 96 117 0.90

5 17 0.011 0.96 11.1 4.3 1 21 606 626 606 627 0.94

6 17 9e-05 0.0079 17.7 0.4 2 23 635 656 634 656 0.95

7 17 6.1e-05 0.0054 18.2 0.8 2 23 681 702 681 702 0.98

8 17 0.36 32 6.3 3.8 1 23 719 741 719 741 0.98

9 17 0.0062 0.55 11.9 2.2 2 23 771 792 770 792 0.95

10 17 0.0018 0.16 13.5 3.5 3 23 846 867 844 867 0.93

11 17 0.0012 0.1 14.2 1.3 2 23 874 895 873 895 0.96

12 17 0.00025 0.022 16.2 1.3 1 23 902 924 902 924 0.98

13 17 0.0013 0.12 14.0 1.4 1 23 930 952 930 952 0.98

14 17 2.6e-07 2.3e-05 25.6 1.6 1 23 958 980 958 980 0.98

15 17 0.00017 0.015 16.8 1.1 1 23 986 1008 986 1008 0.99

16 17 3.8e-05 0.0034 18.8 2.2 1 23 1012 1034 1012 1034 0.98

17 17 0.00068 0.06 14.9 1.6 1 23 1042 1064 1042 1064 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	0.097	8.6	8.1	0.9	3	21	6	25	4	26	0.85
2	17	0.095	8.4	8.1	0.7	3	20	33	50	31	52	0.92
3	17	0.056	5	8.9	1.8	6	21	75	90	70	91	0.88
4	17	0.078	6.9	8.4	0.6	3	21	98	116	96	117	0.90
5	17	0.011	0.96	11.1	4.3	1	21	606	626	606	627	0.94
6	17	9e-05	0.0079	17.7	0.4	2	23	635	656	634	656	0.95
7	17	6.1e-05	0.0054	18.2	0.8	2	23	681	702	681	702	0.98
8	17	0.36	32	6.3	3.8	1	23	719	741	719	741	0.98
9	17	0.0062	0.55	11.9	2.2	2	23	771	792	770	792	0.95
10	17	0.0018	0.16	13.5	3.5	3	23	846	867	844	867	0.93
11	17	0.0012	0.1	14.2	1.3	2	23	874	895	873	895	0.96
12	17	0.00025	0.022	16.2	1.3	1	23	902	924	902	924	0.98
13	17	0.0013	0.12	14.0	1.4	1	23	930	952	930	952	0.98
14	17	2.6e-07	2.3e-05	25.6	1.6	1	23	958	980	958	980	0.98
15	17	0.00017	0.015	16.8	1.1	1	23	986	1008	986	1008	0.99
16	17	3.8e-05	0.0034	18.8	2.2	1	23	1012	1034	1012	1034	0.98
17	17	0.00068	0.06	14.9	1.6	1	23	1042	1064	1042	1064	0.98

Sequence Information

Coding Sequence: ATGGCGTCTTTGAGCTGCCCACTGTGTTGCGGCAGATCATTTGGGAATAGAAAATCACTTCGATATCACTTGCTGAGCTCTGCCGAGAATATCTGCTGTCCAGAATGCAAACAGCATTTCAGTACGATCCTTCAACTTTCGGTTCATTTGACTGCAGTGTGCAAGGAACCACGTGATGAAGGGAACCCATCATCACAGACTTCCAATGCTTGTCCTCTATGCTGTGGAAGATGCTTCACCAACAGGAAGTCACTGTGGTATCATCTGTTGAGCTCTGCAGAGAATATCTGTTGCCCCGAGTGTAACCAGCACTTTAGTACGATATTGGAACTTTCTGATCATTTAGATACAGTGTGCAGTGAACCACTTGACGATCAATCCAACTCATCGCTATCAACGCTTCAACCCAGTGGTAGTGTGAAATCAAATGCTGAGATTGAATCATTGATTGAACCAGGTGTTGAATTATCAGTGAAGCAAGAGGTTCTAGAAGAAGAGGTGCTAACATCCATGTCTATTGAAGGCTGTGAAGTGGTCGAAGTTGCCGATATCGATTGGGACAACGGTAATGAAGAAGAAATGCATTTCTGTTCATCTTGCAAAGTGAAAATTAAATCCGTTGTCGAGCACATCAGCACGTATCATCCATACCAAACTGTTTACTATGAAACAGGAACATCAGCAGAAGAATTAGAAGCATCTGGCTATATTGCTGAAGAGATGGCCAATCTGGCAGATGGCTCACATAGTCACACCGAAGAAGTTGATGCAGCGGAACAATCTGATAATGAGCAATATGACGAGCAAATACTGCCTGAAATTGATGAAACTCGAGAAGAAGTCATTATTGCCAACACAGTTTTACTATCAAACCAGTACACAGATAACGTTATCGAACGAGAAAACATTGTTGTCAAAGATAACTTGTCGGTAATGAAACAGAATGTTTATTTGGATAATAACTTGGTAACGGAAGCCGCTACTCAGTATTTACATAATCGAGGGTTTCCAGCTAATGCGACTCCTACAAAGTCGGTAGCTAATGAGAACCCGAAAATGAGAGAGAATGACGTTGGTAAATTGCTTCGTGCAAAGTTAACCTCTCCTAGGAAGGTTAATACAGTGGCGTCACATACTGCGTTGGATATTAATCCAGGAACGGAATTAGTTGATATGGACTTGGAGAAAAATAAAACGACCTTTCCTCGGGTGCTGGGAACCGTCGTTAAAACTTCTGATTTGGTCGACGCTAAGACAGGAATACCGTACGTTCGTAAGATGGTGCGTATCGAGAAGTTCTGGGAAAGTGATGATACGAAGAACACCGATACGGTAGATGATTCTACGCTCGAGGCGGGCGAGATCACCATGTCTGAAGTACCGTTGGCGAAAAAGAAACATACAAGCCCCATCAAGAAGTTTCCCATCAAAGTGGCTCACAAGGGTATAGAGCCGAAGGTGTTGAGTGTACAGTCTCATTTGGAACAGCTGTTGAGATCGGGAGCAAACATAACCGTTGAGCAGAGTCTGCCGAAAGGTTATGTCGAGGAGAATGGTGTGTTTGTCGAGGAGTCCGGTTTGAAGAAACCCAAACGGTACGTGCTGAAGAACGGGGTCTACGTGGCTGCGGAATCAAGCATCAAGAAAATGCTTGGCCACGAGTACGCGCTGGACCAGTCGCAGGAGATAGAAAATGAGACTTCTGATATCGTAGAAAGTGTTCAGGTGAATTTCAATAAGACGAAAACGGAGCGTACTCGAGTCTCCATACTCAAATTCATCCAAGACAATGTTGGCGAGAATATGATCCCTATTTACAGTTGTAGTAAATGTACCAAAGAGTTCAGCAACCCATCACGTTTTAAAATTCATAAGTGTAAGATAAAACCGGATGTAATTCTAATGTGCGACATTTGTGGAGTTACGTGCAAAACTCCACGCAATTTGAAGGCTCACGTTGAGTCTCACAAGCCTGAACATAAAGAAAAGCTACGACTGAAAAAGGTCGCACGGAAGAAAACGACTGATATCAAACCGGCGACGTGTGAAATATGTAACACTCAATTCACGACGTTCGGTGGACTTCGTATGCACATGAGAATGCACAGGCCCGACAACGTTAAGAAAATAGCTGAAATGAACAATAAGTGCGAGTTCCGCTGTGATTTATGTTACATGGTATGCTACAGCGAGCGAACATTCCGGATACATTATAAGATTCATTATATGGAATCGAATCCGAAGGTGATTACCGCGGATAACATTCAGGTCGAGGAGGAAGAAGTACCTCATGATGCATCAGAGAGCCTGTCCTGTACACGTTGTTTCTTGTCATTTACCAATAATGAAGAGCTGAAAGATCATTGGATGCATCACTGCACTGAGCAGAGTACGACCGAGGTGGTTTGCGAGGAAACGGTGATCGCTTCTGAACACTCTGAGGAATACTTCACTTGTACCGAGTGCAGTAAAAATATGTCAATCAACCTACAGGAGTCTCACGAAAACATGCATAGAACGTCGACGCTGATGTTCTGTGGTAAATGTAATAAACACTTCCGCTCGAAGACGCAGCTCGAGTTGCACATCGCACATGCTCACTCGTCCGACGTAGATCTTGAGTGCCCTCACTGTAAGATGAAGTTTTTTGACGAGGCGCTGCTCAGAGCTCACAAGATGAAACACTCTGGTATCGTTCGGCCGTACCCCTGCGGGTTCTGTGGACGCCGGTTCAGCAGGCCGCACGAAAAAGTCAAGCACGAACGTATTCACACGGGGGAAATGCCGTACGAGTGCGAAGTTTGTTCCATGAGGTTCAGAGTGGCCTATTGTCTCAAGATGCACGAACGTATTCACACTGGCATCAGACCCTACTCATGTGATCAATGTGGGAAAACATTCCGTACTCGCAGCGGTTACAAACAGCACATTCGTATCCACTCCGACCTGCGAGCGTACCAGTGCAAGTTCTGTCCGAAGGCGTTCAAAACGGTGGTCCAGTTGTCAGGACACCGCAAGAGCCACACCAAGCCGTACACTTGCAGCGAGTGTGGCCGCAGGTTTGCCACCATGTTCTCGCTGCGTCATCACCTCTCCGTGCACCAGAAGATTGACGCTCTCAAACACAAGTGTCACGTTTGCGGAGCTTCGTATGGCCGTGACTACGCGTTGAAAGACCACCTGAAAATCCACGGTAAGAAGGTTTTACCGCTGCCTGACGTGGAACACTCGCGCGCAGACTCGTCTCAAGAAGAGAGCGACTTGGAGAACGACTCTGAGTAG
Protein Sequence: MASLSCPLCCGRSFGNRKSLRYHLLSSAENICCPECKQHFSTILQLSVHLTAVCKEPRDEGNPSSQTSNACPLCCGRCFTNRKSLWYHLLSSAENICCPECNQHFSTILELSDHLDTVCSEPLDDQSNSSLSTLQPSGSVKSNAEIESLIEPGVELSVKQEVLEEEVLTSMSIEGCEVVEVADIDWDNGNEEEMHFCSSCKVKIKSVVEHISTYHPYQTVYYETGTSAEELEASGYIAEEMANLADGSHSHTEEVDAAEQSDNEQYDEQILPEIDETREEVIIANTVLLSNQYTDNVIERENIVVKDNLSVMKQNVYLDNNLVTEAATQYLHNRGFPANATPTKSVANENPKMRENDVGKLLRAKLTSPRKVNTVASHTALDINPGTELVDMDLEKNKTTFPRVLGTVVKTSDLVDAKTGIPYVRKMVRIEKFWESDDTKNTDTVDDSTLEAGEITMSEVPLAKKKHTSPIKKFPIKVAHKGIEPKVLSVQSHLEQLLRSGANITVEQSLPKGYVEENGVFVEESGLKKPKRYVLKNGVYVAAESSIKKMLGHEYALDQSQEIENETSDIVESVQVNFNKTKTERTRVSILKFIQDNVGENMIPIYSCSKCTKEFSNPSRFKIHKCKIKPDVILMCDICGVTCKTPRNLKAHVESHKPEHKEKLRLKKVARKKTTDIKPATCEICNTQFTTFGGLRMHMRMHRPDNVKKIAEMNNKCEFRCDLCYMVCYSERTFRIHYKIHYMESNPKVITADNIQVEEEEVPHDASESLSCTRCFLSFTNNEELKDHWMHHCTEQSTTEVVCEETVIASEHSEEYFTCTECSKNMSINLQESHENMHRTSTLMFCGKCNKHFRSKTQLELHIAHAHSSDVDLECPHCKMKFFDEALLRAHKMKHSGIVRPYPCGFCGRRFSRPHEKVKHERIHTGEMPYECEVCSMRFRVAYCLKMHERIHTGIRPYSCDQCGKTFRTRSGYKQHIRIHSDLRAYQCKFCPKAFKTVVQLSGHRKSHTKPYTCSECGRRFATMFSLRHHLSVHQKIDALKHKCHVCGASYGRDYALKDHLKIHGKKVLPLPDVEHSRADSSQEESDLENDSE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00242480;
90% Identity: -
80% Identity: -