Bris024916.1
Basic Information
- Insect
- Brachyptera risi
- Gene Symbol
- -
- Assembly
- GCA_964007535.1
- Location
- OZ023333.1:29437046-29446855[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 2.6 2.3e+02 3.6 0.1 2 20 337 355 336 359 0.87 2 19 1.3 1.2e+02 4.6 0.4 1 19 400 418 400 418 0.96 3 19 0.31 28 6.5 2.0 2 17 428 443 427 449 0.78 4 19 6.8 6e+02 2.3 0.9 3 23 458 479 456 479 0.91 5 19 0.00015 0.014 16.9 1.3 2 23 485 506 484 506 0.97 6 19 0.0012 0.11 14.1 1.2 1 23 512 534 512 534 0.98 7 19 0.001 0.09 14.3 5.6 1 23 540 562 540 562 0.99 8 19 0.078 6.9 8.4 0.8 1 23 573 596 573 596 0.94 9 19 0.001 0.088 14.4 1.5 1 23 614 636 614 636 0.98 10 19 0.06 5.3 8.8 0.9 1 23 642 664 642 664 0.98 11 19 0.0021 0.18 13.4 0.7 1 23 689 714 689 714 0.97 12 19 0.00039 0.035 15.6 0.2 1 23 721 744 721 744 0.98 13 19 0.0054 0.48 12.1 6.4 1 23 756 779 756 779 0.96 14 19 1.9e-05 0.0017 19.8 0.5 1 23 784 806 784 806 0.98 15 19 0.00011 0.0097 17.4 5.1 2 23 813 834 812 834 0.96 16 19 1.1e-05 0.00097 20.5 0.6 1 23 840 862 840 862 0.96 17 19 0.0041 0.37 12.4 0.4 1 23 868 890 868 890 0.98 18 19 3.4e-06 0.0003 22.1 0.1 1 23 896 918 896 918 0.97 19 19 0.0013 0.11 14.0 0.6 1 23 924 947 924 947 0.97
Sequence Information
- Coding Sequence
- ATGAAGCTACAACTAAAAATAGCCACGGGGTCAAATTTGGAAGTGGAAATACTACCCGAAGATACGTTTGCAACCCTGATTACCCGAACATTTGAAGAATCTGGGATATCTCTCAATTTGACGCATTTCAAGTTACCAGGGAAGAAAATtgcgctgagtgataatgtttCATATTACTTCACGGGTAAAGTTCCAGAAATGTCTGTTTCTTCATATTTTCCTGCCCAACTGTGCCGTTTGTGCGCTAAGAACAGCTATGATATGACGTTCATCTTCGAAAATATGGAGCTTCGGCAATCCATTAATACCTGGCTTCCAACTCACGTGAGCAAAAAGGATTTACTTCCGAAGCAGGTGTGCAGCAACTGTATAGAACGGCTGGAAATGTGCAAGGCGTTTCAAGTCGAGTGCGTTCGAGCAGAACTAACTCTGAAGAAGTATCTAGAAAGTGAGAAGTTCTGTTTGAAAACAGGCATCTCCAATGCAGATGAAACACAAGGTCAAAGTTTTGACTGTGGATTCGTTTACGGAGATAGGAAAGTCATCTCTCTTCCGAATGAGGAAAGTTGTCCGCCCCCTATGGAGGTCAATTACTGTTGTCCTTCATGTCACCAAGGCAACGTTTGCAATATCAACGAAGACGATGTCGAGACGTCAGATGAGGAGAGCGAACTGGATGGCAGTTTTGTGTCTCACGATTTGTCTGACTTCGAGGAAGAAGTCGACGATAACATATTAGAAGACGATGTAATTGCCGATGACGTATCAGACATTGACGATGTAACAGAACAAGCAGACAGCGAGAGTagagaaaataatgattataatgagTGTGATGTCAAACCTGATGTATCGGATAGAGTCATGACAACATCTTCACGACCTATCCGAGCTAAAAGAAAGCCGTTTAAACTTTTATCTGATGCCGAACATGCCGTCAATGATTTGGAGGCGGTTACACGcaaagtgatcaaattagagCAAGAGAGTTCAACTAGTGACGGAATCAAATGTAATATCTGTGATGGATATACCGTCAGTCTGGAACAGTTACTGCAGCATTCGTTTGAAATGCACGTAGAGAATAATTTGTTTCCTTGTCCTTTATGTCCGTTGGCTTTCCATGAAGGCCCCCTCGAGCTAATAAGCCATTTCTCCTCTGATCATAATTCTGAGGCTACCAAAGAACTAGGTCTATTTGTTTGCAAGACTTGTTATATTCTTTTCTCTAGCAAACTTCTTCTGTTGAATCATGATTGTAAAGTTTCCAAATCGAGCTTGAAGTGTAAAGAGTGTGGCATGGAGTTCAAAACAAAGATACGTTTTGAATTTCATAAACAATTCCACGTGGAAGGTTCTAAACCACTTCATTGTGAGCCTTGTAGTGCAGACTTTATGAATGAAGACGAATTCTATAGACACTTCAGAAGTTTACATAAAGATCAAGAAACAAAATGCTTGGATTGTAACAAAAACTTTGTCAACTACTCGTCGCTCGTTGTTCATAGACGTTTTCATAATAACATTCGAAAGTATAAGTGCGGAACCTGTACGAAATCTTTCCTCGACAAACAAACTCTAACCGAACATATGGTCTCACATATGCAATCAACACCATTCCAATGTCACATATGCCATAAATATCTTGCTCGAAACTCTCGTCTTAAAACACATTTACTCACACACGAGTCGACTAGTTCTAAGCCGCAGAAAGCCTACGACTGTGCGTCTTGCCACAGAATTTTCCCTAGTCAAAATAAATATCTCGAGCACTTGAATGAAGATCACGAGAATATGTCCGACTCGGTAGCGTTCGAAGTTGTTTTCGTAGATAAAGTTTTCCGTTGTGAGTATTGTAACAGTAACTTCACTACAATGGATGGATTAAGGACGCACAGGGAATCGCATGCCGGCGAAAAGAAGTTCCAGTGCGACTTATGCGAATCAGCATTTGAAAGTTTCGCCCGGTTGACGACACATAAGATGAAGCATGGAGTGTTCAAGGTCTCGAAGGCAGCTGCAGAAAAGGCAGGGGAACCAGATGACTTTGCGATACCATTGTTTTATGTTTGCAACGCAGATAACTGCGAGAAAATGTATGTTCAGTGGTCATACTTGGGTATTCATAAGAGGATGTGTCATTCGGAAGTGCAGTTCATGTATCAGTGTAAGCAATGCCCCGAGTCTTTCCCCACCTCGTGGGCGGTAGCGTACCACCGCAAGACCATGCACTCGGCCGGTAACCCGCCCCGTGAAGGCAAGCCACACTGTTGCCACCTTTGCAGCAAGAGTTTTGCCTCGTTTCGTGGTCTAGAGAGACACCAGGCCACCAATCACCAGGCTGAGACATTCCAGTGTGGCACTTGTTCACGTATATTCAACAAGCAGGCGTCGTTAGAGAAACACATGCTGGTGCACCAAGAGGAGAAGACTTGCGTTTGCGATGTCTGCGACAAGCGGTTCTTCCATCAGAGCAGCTTGTACAAACACTTGAAGATACACCTTGACCTCACCTCTTACCTGTGCAGCATTTGTGACAAGCGATTCAACGATAGCACGTCGTTGAACGAACACGTTCGGCTGCATACGGGAGAGAAACCGTTCCAGTGTGAGGTCTGCATGAAGACGTTTAGGACGCGAGGCGTTTGGCTTCAACATGTTAGAATACACTCGAACCAAAGGCCATATCCGTGTGAAATTTGTGGCGTTTCATTCCGACGATCGTGGGCTCTGAAGAATCATCAGCTCCTTCATACGGGCGAAAAGAGATTCCAATGTGTAACTTGTTCGATGGCTTTTCGACTGAAACAAGACCTACAAAGACATGTTCTGAAAGAACACCCGTGCGAATGA
- Protein Sequence
- MKLQLKIATGSNLEVEILPEDTFATLITRTFEESGISLNLTHFKLPGKKIALSDNVSYYFTGKVPEMSVSSYFPAQLCRLCAKNSYDMTFIFENMELRQSINTWLPTHVSKKDLLPKQVCSNCIERLEMCKAFQVECVRAELTLKKYLESEKFCLKTGISNADETQGQSFDCGFVYGDRKVISLPNEESCPPPMEVNYCCPSCHQGNVCNINEDDVETSDEESELDGSFVSHDLSDFEEEVDDNILEDDVIADDVSDIDDVTEQADSESRENNDYNECDVKPDVSDRVMTTSSRPIRAKRKPFKLLSDAEHAVNDLEAVTRKVIKLEQESSTSDGIKCNICDGYTVSLEQLLQHSFEMHVENNLFPCPLCPLAFHEGPLELISHFSSDHNSEATKELGLFVCKTCYILFSSKLLLLNHDCKVSKSSLKCKECGMEFKTKIRFEFHKQFHVEGSKPLHCEPCSADFMNEDEFYRHFRSLHKDQETKCLDCNKNFVNYSSLVVHRRFHNNIRKYKCGTCTKSFLDKQTLTEHMVSHMQSTPFQCHICHKYLARNSRLKTHLLTHESTSSKPQKAYDCASCHRIFPSQNKYLEHLNEDHENMSDSVAFEVVFVDKVFRCEYCNSNFTTMDGLRTHRESHAGEKKFQCDLCESAFESFARLTTHKMKHGVFKVSKAAAEKAGEPDDFAIPLFYVCNADNCEKMYVQWSYLGIHKRMCHSEVQFMYQCKQCPESFPTSWAVAYHRKTMHSAGNPPREGKPHCCHLCSKSFASFRGLERHQATNHQAETFQCGTCSRIFNKQASLEKHMLVHQEEKTCVCDVCDKRFFHQSSLYKHLKIHLDLTSYLCSICDKRFNDSTSLNEHVRLHTGEKPFQCEVCMKTFRTRGVWLQHVRIHSNQRPYPCEICGVSFRRSWALKNHQLLHTGEKRFQCVTCSMAFRLKQDLQRHVLKEHPCE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00242460;
- 90% Identity
- iTF_00242460;
- 80% Identity
- -