Bris036919.1
Basic Information
- Insect
- Brachyptera risi
- Gene Symbol
- -
- Assembly
- GCA_964007535.1
- Location
- OZ023339.1:17566792-17588250[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 1.4e-06 0.00013 23.3 1.2 2 23 330 351 330 351 0.98 2 18 0.00042 0.037 15.6 1.2 1 23 357 379 357 379 0.98 3 18 0.00037 0.032 15.7 6.1 1 23 385 407 385 407 0.99 4 18 1 90 4.9 7.6 1 23 413 435 413 436 0.93 5 18 0.00012 0.011 17.2 0.3 2 23 470 491 469 491 0.96 6 18 0.0002 0.018 16.6 0.5 1 23 497 519 497 519 0.97 7 18 0.0037 0.32 12.6 4.2 1 23 525 547 525 547 0.97 8 18 0.00072 0.064 14.8 1.3 1 23 551 573 551 573 0.97 9 18 0.0025 0.23 13.1 6.7 1 23 579 601 579 601 0.98 10 18 1.4e-05 0.0012 20.2 2.9 1 23 607 629 607 629 0.98 11 18 0.048 4.3 9.1 1.8 1 23 635 657 635 657 0.97 12 18 1.4 1.2e+02 4.5 2.7 1 23 663 685 663 685 0.97 13 18 0.00034 0.03 15.9 1.2 1 23 691 713 691 713 0.97 14 18 0.0015 0.13 13.8 3.0 1 23 719 741 719 741 0.98 15 18 0.00075 0.067 14.8 5.7 1 23 747 769 747 769 0.97 16 18 0.0079 0.7 11.5 8.6 1 23 775 797 775 797 0.98 17 18 0.0017 0.15 13.7 5.3 1 23 803 825 803 825 0.92 18 18 0.17 15 7.3 3.1 1 23 831 854 831 854 0.98
Sequence Information
- Coding Sequence
- ATGGCCAGTGCGCGCGCACCAACGGACCGGCATTGGACGAGGTGTTGTCGAGATGAACATCTAGAAGATCAGTTGGCCGTGACGGAGGTCCTCCAACTTCGTCATGTCAACATGAAGATGGCAGCAAAATCTAGAACCAGGGCTAGAGAAGATGCATTCCGGCGCCAATGGATCTTTGTTGTCATAACAGACAAACAAAGTGAATTGGAAAGCGACGTAATGGAGTTGGAACCGTTGACTATACCGAAAGAGGAGGAAGATGAAACTGACGTTGTGGTGAAATATGAAGCTGCGGATCAGTTTGAATCAGCGAGCGATGTAGATGGCAGCACTGGTGTTGATCCCTTACGATTCGCAATCaaagaagaagatgaaaaatTTCCGCTCGTGAATACCGGCGTGCTGGGTGATCCTGTTACAGCGAGCGATGTAGATGGCAGCACTGGTGTTGATCCGTTACGCGTGGCAATCAAAGAAGAAGATGAAAAGTTTCTGCTCGTGAATACCGGCGTGTTGGGTGATTCCATTACAGtggctgctatcaagactgagtgtgatcccagcaagatTGAAGTGACGGAACAGTTCCTGGAGCCGGTCGCTCCGAGCACAGAGCCAGAAATGGAACAGGATGCGCTTCTTGTACCCAAACAGGAAGAACTGGATATCAAGGATGATTGTGCATTCGAGCCGGAGGAATCACATGATATTGCTTTCGTTGCCGTTGTTGAGAAACAGTATGACGAAATGTCCATTGGCCTAGCAGACGATGAAAGCAAGAATCAAAATACAGTGCTTCTCATCGAACAATCTATCGATTCGAACCCAGTGATTTCTATTTCACCACAAACATCATCCACGAGTGTGGACAATGATAGAAAACCTCCAAAGACTCGTGCGACCAGaattaagaaaaaaagagaaaagtcATCCGGAAAGATCAAGAAAATGACAGTCAAGAAGAAGAGTATAATAGTTAGAAACAATACTTGCGATGTGTGCGGTCACATGTATAGCAGCCCGAGCAATCTAAAAACACACATGCTAACACATACCGGAGACCGACCGTTCCAGTGCACGAAATGTCCTCTCAAGTTTTCTCTACCATACCGTCTGAAATTACACATGCTGAATCATACCGTTGAACCACCATTCCAGTGCAACGTATGTTCTTTCAAATGTAAACAATCGTATTATCTAAAAACCCACATGATGACGCACACCAACGAGAAGCCGTTCTTATGCGACAAATGTTCTTATCGATGCAAACTGGCGTGCTATCTCAAGACTCACATGCTGATCCATCACGCTAGTAGGCCATCCAATTTCGATGAATCTACTGCGGATCGTAACGATTCTTCTACCTTCGAGAAACATCCATCGAGTCGTTCCGATAAAAAGTCGTTACAGTGTAAGGAATGTCCGTTCGTGACGAAGACAGCATCTTATCTGAAAAGTCACATGGTGGTCCATACCGGTGGACAGCTTTTTCAGTGTCAGGATTGTCCTTATAAGAGCATTAGACGTTCCGCCCTGAAGAAACATGCGTCGGTTCATATCGGTAAGACAACGTTCCGCTGCAAGAAATGTTTATTCAAGTGCAGTGATTCTTCCAGCTTGAAAAGACACGCTCTGATTCATAAACCAACTTTCGAATGTAAGGAATGTCCTTTCAAGTCTTACCAATCGTCTCGGCTGAAGAGTCATATGATGATTCACTCGGGTGAAAAGCCTTTTCATTGTAAGAATTGTTCTTACAAGTGCATAACGTCAAGTAGTCTGAAAATACACATGtcgacacataccggtgagaagtCATTCCGGTGCGACAAGTGTTCGTACACGAGTTCGAATTCGAGTAATCTGAAAACTCACATGTTGAAACACACCAGCGAAATGCCATTCCGGTGCGAGAAATGTTCTTTCGAATGCAAAGTACCGCGCTTACTGAAAGAACATGTCATGCTGCACACCGGTGAACTACCCTTCGAATGTGCCGAGTGTTCTTTCAAGTGTCACACGTCGGCAATTCTCAGAAGACACGTGGCGACTCATTCCGATATTAAACCGTTCCAATGCAACGAGTGTCCTTATAAGACGAAATATGCAGCTCATTTGAGGGCTCACGCAAAACTACATACCACCGAGAAACCGTTTCCCTGTGATGAATGCTCTTATAAATGTGGTAGTTTGAGTAATCTcaaacaccacgtgatgatgCATACCGATAACAAGCCGTTTCATTGCAAGGAATGTGATTATGAgtgtaaaaatttgaatcaattgaaaaagcACATGTCTGTGCACACCCCTGAGAAACTATTTCATTGCTCGGAATGTTCGTACAAGTGCAGTCAGTTGGATTATCTCAAGAGACACATGTGTATCCATTCGGACGTGAAGCCATTCCATTGTAAGGAATGTGATTATAAGTGCAGGTCGTCGGGTAATCTAAGGCAACACATGTGGACTCACACTGGCTCGCTGCCATTCCAGTGTAACGATTGTGCATTCAAATGtcgaaaaaaaactcgaataATTGCGCATATGAAGTCGGATCATATGAAGAAGTAA
- Protein Sequence
- MASARAPTDRHWTRCCRDEHLEDQLAVTEVLQLRHVNMKMAAKSRTRAREDAFRRQWIFVVITDKQSELESDVMELEPLTIPKEEEDETDVVVKYEAADQFESASDVDGSTGVDPLRFAIKEEDEKFPLVNTGVLGDPVTASDVDGSTGVDPLRVAIKEEDEKFLLVNTGVLGDSITVAAIKTECDPSKIEVTEQFLEPVAPSTEPEMEQDALLVPKQEELDIKDDCAFEPEESHDIAFVAVVEKQYDEMSIGLADDESKNQNTVLLIEQSIDSNPVISISPQTSSTSVDNDRKPPKTRATRIKKKREKSSGKIKKMTVKKKSIIVRNNTCDVCGHMYSSPSNLKTHMLTHTGDRPFQCTKCPLKFSLPYRLKLHMLNHTVEPPFQCNVCSFKCKQSYYLKTHMMTHTNEKPFLCDKCSYRCKLACYLKTHMLIHHASRPSNFDESTADRNDSSTFEKHPSSRSDKKSLQCKECPFVTKTASYLKSHMVVHTGGQLFQCQDCPYKSIRRSALKKHASVHIGKTTFRCKKCLFKCSDSSSLKRHALIHKPTFECKECPFKSYQSSRLKSHMMIHSGEKPFHCKNCSYKCITSSSLKIHMSTHTGEKSFRCDKCSYTSSNSSNLKTHMLKHTSEMPFRCEKCSFECKVPRLLKEHVMLHTGELPFECAECSFKCHTSAILRRHVATHSDIKPFQCNECPYKTKYAAHLRAHAKLHTTEKPFPCDECSYKCGSLSNLKHHVMMHTDNKPFHCKECDYECKNLNQLKKHMSVHTPEKLFHCSECSYKCSQLDYLKRHMCIHSDVKPFHCKECDYKCRSSGNLRQHMWTHTGSLPFQCNDCAFKCRKKTRIIAHMKSDHMKK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -