Bris011421.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Brachyptera risi
Gene Symbol
-
Assembly
GCA_964007535.1
Location
OZ023328.1:28544643-28557124[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 13 0.018 1.6 10.4 1.5 1 23 298 320 298 320 0.95
2 13 2.2e-06 0.00019 22.7 0.8 1 23 325 349 325 349 0.94
3 13 0.073 6.5 8.5 1.7 1 23 373 396 373 396 0.91
4 13 0.0019 0.17 13.5 1.9 1 23 402 424 402 424 0.97
5 13 0.083 7.3 8.3 0.1 1 23 433 456 433 456 0.88
6 13 1.1e-06 9.9e-05 23.7 2.8 1 23 462 484 462 484 0.98
7 13 0.00013 0.011 17.2 0.8 1 23 490 512 490 512 0.92
8 13 0.00015 0.013 17.0 2.5 1 23 518 540 518 540 0.97
9 13 1e-07 8.9e-06 27.0 0.4 1 23 546 568 546 568 0.99
10 13 0.00014 0.013 17.0 6.0 1 23 574 596 574 596 0.97
11 13 1 92 4.9 6.3 2 23 603 624 602 624 0.96
12 13 1.1e-05 0.001 20.5 0.9 1 23 630 652 630 652 0.98
13 13 4.6e-07 4e-05 24.9 3.0 1 23 658 680 658 680 0.99

Sequence Information

Coding Sequence
ATGATGGATATACCACTATATGACTCAACTTTTTGTCGATTATGTGCCGAAGAAAATCCCAGTGGGGTGTTATTATATGCAGATGAAGATAGCGAAGCAAATTTCAGTGCATTAGTGAATCGGTATCTTCCTTTCAAGGTCCAAGATGATGGCAAATTGCCACAAACAATATGCCCTGGTTGTCACATACAACTTCAAGCAACAGCCCAGTTTTTTGAGCTTCTGGTTGAAGGTCAAAAGAAACTACGTGACCTGTGGAAGAACCAGCTTGAGACTCAGAGAAAGGAAAGGCACCGAGAGGCACATGGTGGCGAATCTTTGTTGATCAATACCGACCAAGATCAACAGGTCCTCGATGAAGATGGTGATAATCAGATTGTTACCATTCAAATTATGGCAGATGGGTCATTGTTTACGACCAGTCATGAAATGGCACTCAAGATTGAAGGGTTGGAACGGCCGAGACGTAAACGAGGACGACCACCAAAACAAAAACCAACAGAGTCGCTGCCTACAGACGAGGTTGCGGTAGAGCTACCGCCAGAACCAGAACCTCTCAAGTTGagggaagaagaggaagaagaacaAGATGTAGATGGTAGAAAGCGGAGAAAGAGAAAAATTCCTCAAAGGTTCATGGAAGCTGTTGCTGGAAAAGAGTTGGAGAGAATATTCCGCGAAGAAGGAGTAATTGACGAAGATGAACCGGAAgaggaagatgaagaagaagaagcagaagaCAAGTTGAATAATGTTGGAGTACAAGATGGTGCTGAAGAAGTCATCGGACACTTGGAAACTCCCGAGGGACAGGATCTTGGAGAACTCGTCATTGTGAACAGGGGCAGGGGGAGGGGCCGACCCCGAGGAGGTAAGAGAAGGAGAATCAAATTTGAGTGCGAGATCTGTGGTCGTGGGTTCCAGCACAGAGGGAGATATGTGTTGCACAGGAGTTACCACAAAGGTGTAAAATTTGAATGCAGCCAGTGTAACAAACGGTTTTCAAGCAGAGAGAATTTAGAACTTCATCAAAAAACAGCCGGTCACTCGGGGGAGGGTATAATCGAAGGGGTTGAAGGTGGTGAGAACGGGGGTGAGCTGCAGACGGAGGTGCGGTATCCGTGCGATCAGTGCGAAAAAACCTTTCAAACGAAGCAAAGTCACGAGGTTCACTACAAAGCAATTCATCAGCAGCAAAAACCTTTCTCATGTGAAGTTTGCGGAAAGAACTTTGCGTATCATAACAGTCTTAAGTTCCACATGGCTTCACACGAGGTTGTCAAGAATGATAAGGGCTACCCGTGCGATATCTGCGGTAAGCTATTGAACCATCCGAGCTCGGTTGTCTATCACAAGGAAGCCGAACACAACAATGGCCGACGGTTCGTGTGCAACAAGTGCGGCAAAGGTTTCAAGCACAAACAACTGCTGCAGAGACATCAGCTTGTTCATTCCGAAGATCGACCTTTCAACTGTAAATCGTGCGGAGCTAGCTTTAAGACGAAGGCCAACTTGTTGAATCATCAGCCTACACACACTGGCGAGAAGAAATATTTCTGTGAAATGTGTGGACAGCAGTTTGCTCATAAAACCAGTCTCACGCTACATTACCGATGGCACACAGGTCAGAAACCGTACGAGTGTGACGTCTGCCAGAAAACGTTCTCGCAGAACGGCAACCTCCAGGAACATCTTCGTATTCATACGGGCGAGAAACCTTTCTGCTGTGATTTCTGCGGAAGAAAGTTCACAACGAGCTCTCAGTTCAAACTGCATGTTAAACGTCACACAGGCGAACGTCCATGGAAGTGTGAATTCTGCGGTAAATCGTTCCTCCACAAGGACACTTGGAAGTGTCATACTAGACGTCATAAAGGAGAGAGACCGTTCACGTGCGAGTACTGTCAGAGGGGCTTTACCGAACAGTGGGCACTCAAGAAGCATCTGCGGTTACATACAGGTGAAAAACCATATACGTGCAACTTCTGTGGCAAGGCATTTGCAGATTGTTCTAACCTCACCAAACATAAACGAGTGCACCGAGAGAACAAGGAGAGCATCGTTGGCAATGGTGTCAATGTTGATCCCAACGTTTGGAATCTCATACGATCTCATTTGGCTAAAGAGGTTGGTAGCAGTGCGATGACAGAGAGTGACATTGTCGGTGAAGGTGAAGACGGAGTCCATCATCAGGTTATCTACGTAACGTACCAAGACCCGGACGATCCAACACAGGCGCAGACACTTCAGATAGTCGACGATATGACCAACGAAGATGAAGCGCAGCATGAATTGCAACTGAATGTGAACCAAGATATGCTGGTGTCCGACCCTGCAGAAGAGAATGACGATGAGGAGATGAAACTGGACAGCCAGACAGATGATATCGATTCCCAGTCTCTCCAGGTAACTGACGAGGACGGCAATCCCATTCACTTCACCATGCAGGATGGACGGGAACTACAAGTCTCGATCACTACAGCCGATGGCCAGTCGCTACAAGTTACCACCGTGGACGGCCAAACAATACCGCTTCAACTTATGACCTCTGACGGACAAACCATTTCGTCTGAGATGGCAAGTCAACTTCAGCCAATGCTGGATGCGGCTGCAGGGAAGGAACAGGATGACTCCGAAAAAGAAGATTCTGGCGAATACAGAGGGCAGACTATTGAGTATACAACTGAAGATGGACAGAAGCTGAGATTAGTTACTTACACCGATGACCCCTTGCAATATCTTGATGAGTAA
Protein Sequence
MMDIPLYDSTFCRLCAEENPSGVLLYADEDSEANFSALVNRYLPFKVQDDGKLPQTICPGCHIQLQATAQFFELLVEGQKKLRDLWKNQLETQRKERHREAHGGESLLINTDQDQQVLDEDGDNQIVTIQIMADGSLFTTSHEMALKIEGLERPRRKRGRPPKQKPTESLPTDEVAVELPPEPEPLKLREEEEEEQDVDGRKRRKRKIPQRFMEAVAGKELERIFREEGVIDEDEPEEEDEEEEAEDKLNNVGVQDGAEEVIGHLETPEGQDLGELVIVNRGRGRGRPRGGKRRRIKFECEICGRGFQHRGRYVLHRSYHKGVKFECSQCNKRFSSRENLELHQKTAGHSGEGIIEGVEGGENGGELQTEVRYPCDQCEKTFQTKQSHEVHYKAIHQQQKPFSCEVCGKNFAYHNSLKFHMASHEVVKNDKGYPCDICGKLLNHPSSVVYHKEAEHNNGRRFVCNKCGKGFKHKQLLQRHQLVHSEDRPFNCKSCGASFKTKANLLNHQPTHTGEKKYFCEMCGQQFAHKTSLTLHYRWHTGQKPYECDVCQKTFSQNGNLQEHLRIHTGEKPFCCDFCGRKFTTSSQFKLHVKRHTGERPWKCEFCGKSFLHKDTWKCHTRRHKGERPFTCEYCQRGFTEQWALKKHLRLHTGEKPYTCNFCGKAFADCSNLTKHKRVHRENKESIVGNGVNVDPNVWNLIRSHLAKEVGSSAMTESDIVGEGEDGVHHQVIYVTYQDPDDPTQAQTLQIVDDMTNEDEAQHELQLNVNQDMLVSDPAEENDDEEMKLDSQTDDIDSQSLQVTDEDGNPIHFTMQDGRELQVSITTADGQSLQVTTVDGQTIPLQLMTSDGQTISSEMASQLQPMLDAAAGKEQDDSEKEDSGEYRGQTIEYTTEDGQKLRLVTYTDDPLQYLDE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00242473;
90% Identity
iTF_00242473;
80% Identity
-