Bris024093.1
Basic Information
- Insect
- Brachyptera risi
- Gene Symbol
- -
- Assembly
- GCA_964007535.1
- Location
- OZ023333.1:10401185-10432578[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.0018 0.16 13.6 0.7 2 20 31 49 30 51 0.94 2 19 2e-05 0.0018 19.7 3.2 1 21 57 77 57 78 0.97 3 19 0.083 7.4 8.3 2.6 1 21 95 115 95 116 0.96 4 19 9.7e-05 0.0086 17.6 0.5 2 21 123 142 122 143 0.93 5 19 0.0004 0.035 15.6 0.7 1 21 160 180 160 181 0.95 6 19 0.0087 0.77 11.4 3.8 2 21 212 231 211 232 0.93 7 19 0.00028 0.025 16.1 0.4 2 21 239 258 238 259 0.93 8 19 0.0001 0.0091 17.5 2.6 2 20 266 284 265 286 0.93 9 19 0.051 4.5 9.0 0.1 2 13 293 304 292 306 0.89 10 19 0.00054 0.048 15.2 4.9 1 20 312 331 312 337 0.94 11 19 0.3 26 6.6 1.8 2 20 340 358 339 364 0.94 12 19 0.015 1.4 10.6 3.0 2 21 367 386 366 387 0.91 13 19 0.032 2.9 9.6 2.0 1 21 417 437 417 438 0.95 14 19 0.00035 0.031 15.8 0.9 2 21 445 464 444 465 0.94 15 19 0.0045 0.4 12.3 1.8 2 21 472 491 471 492 0.93 16 19 0.66 58 5.5 0.4 1 14 522 535 522 540 0.91 17 19 0.00022 0.019 16.4 2.3 1 21 568 588 568 589 0.95 18 19 0.0018 0.16 13.6 2.2 2 21 596 615 595 616 0.93 19 19 0.011 1 11.0 0.3 2 21 623 642 622 643 0.92
Sequence Information
- Coding Sequence
- ATGTTTTCTGTTCAGCAATGCAGTGGCGTTGCGAGGCCGTTCATCATCGGCACAGTTGTTGGTCTTCCTCAGTCGACGACACGACGGTTGCAATGCCCACACTGCTATAAGTTCTTTGGTTCTCGTAATTACTTGTTGATTCATATGGCGCAAGAGTGTGGCAAGAGTTTTCGCTGCCCAAAATGTGGCAAACAGTTTACCTATAAGCGCACTCTACACACTCACATCAGACACGAGTGTGGTTGGATTCCGGAAGTCGGTAAGCTAGAGGCCGCACGTCGCTTCCGGTGCTCGACCTGCGGCAACATCTACAAGCACGGACGCCAGTTGACCTACCACATAAAGCACGAGTGTGGTCAAGAGATACGCTGCCCGACTTGCCATAAGCGGTTCGTGCGTCGAGGCACTTTGACATCGCACGTCAACCTGGGCTATGAATCATTTCCAGCTTTCGTAGCTCAAGACCCAACGCAGCGCCATCCATGTCCAACGTGCGATAAAAACTACAAGATTAAAGGTCATCTGACTTATCACATCAGACACGAGTGTGGTAAAGAAATACGTTCCCCCTTACCTTGCGACCAACCTATTGGGAACCTTGAGGTCAACAAACCATTTGATATCCAACGATGTTATTGTCCGGTCTGTAACAAGAGCTTCAAGTTCAAGTGGCAGGTGACTTACCATTTGAAGCACGAATGCGGCAGGACATTACGTTGTCCAATGTGTAATCGTCAGTTCAAACAGAAAGGCACATTTACTGCGCACGTAAATTACGAGTGTGGGGTCGATCTCCGGTGTCCAACATGCAACAAACAGTTCAAACAGAGGAGACATTTACAGGTTCATATTCACTATGAGTGTGGTCAAGATTTGCGATGCCCGATATGCAACAAGAGATTTGTTAATAATCTCCAAGACATAACACGACGTTTCCATTGCGCTGACTGTGACAAGAGTTTCAAGACCAAGTCGAAGCTAACTTACCACGGGAAACACGAGTGTGGTAAAGAGTTGCGCTGTCCCACTTGCAACAAACTGTTCCAACGCATGACCCGGCTGATGACCCACATCTACCACGAATGTGGGAAAGAGTTGAAGTGTCCGAATTGTAACAAAGGCTTCAAGTTCAAACAACATTTGACGTTTCATATAAACCATGAGTGTGGTGTGGAAATGCGATGTCCATCTTATTCGATGTCCTGGATGATGATCCCCGACGTGTGTCTGAACGAGGGCTTCCAGCGGTTCCAGTGTCCGAACTGCGTCAAGTCGTTCAAGGCCGAGAAGCAGCGCACCTACCACATGAAACACGAGTGCGGTCAGGATGTGCGCTGTCCGAAGTGCAATCGGCGGTACAAGAACAGAGCCAAGCTCACCACCCACCTCAACTTCGAGTGCGGCAAATCGTTGAGCTGCGCCACGTGCAGCAAACCGTTCAAGTACAAGAGTCATTTGGACACGCACACGAAACATGAGTGTGACTCTTGTGCTCGGCTCCTGCCCGTGATCAGAAACAACCTTCCAAAAGTCTCTTCCAAACTCCTGGCAAAGAAGACAAGGTTCCAGTGTGTCTCGTGTAACAGAGGTTTCAAACGCAGGGGCGATGCCATGTTTCATTTCAAACACGAGTGTGGGGTGGATGGTTGGACGCTTCCTGGTTCCAACTCGGCTGTACACGTGCAAGGAGAAAGACAGCGATTCTACTGTCCAACTTGCGACAAGAGCTACAAAGAACGCCGCCATCTGAACACGCACGTCAAGTACGAGTGTGGGCAAGATCAGCGGTGTGTCACGTGTCTGAAGACATTCAAGCAGCGCTCTCAGCTGACGACGCATGTGAAACACGAATGTGGCAGAGAGTTGAGGTGTCCGTCTTGTGGCAAACGCTTCAGCTTGATGGCGAAGATGAAGGCTCATAGGAAATATACTTGCAAGGTGTCGAGAGATGGATTTCGGTAG
- Protein Sequence
- MFSVQQCSGVARPFIIGTVVGLPQSTTRRLQCPHCYKFFGSRNYLLIHMAQECGKSFRCPKCGKQFTYKRTLHTHIRHECGWIPEVGKLEAARRFRCSTCGNIYKHGRQLTYHIKHECGQEIRCPTCHKRFVRRGTLTSHVNLGYESFPAFVAQDPTQRHPCPTCDKNYKIKGHLTYHIRHECGKEIRSPLPCDQPIGNLEVNKPFDIQRCYCPVCNKSFKFKWQVTYHLKHECGRTLRCPMCNRQFKQKGTFTAHVNYECGVDLRCPTCNKQFKQRRHLQVHIHYECGQDLRCPICNKRFVNNLQDITRRFHCADCDKSFKTKSKLTYHGKHECGKELRCPTCNKLFQRMTRLMTHIYHECGKELKCPNCNKGFKFKQHLTFHINHECGVEMRCPSYSMSWMMIPDVCLNEGFQRFQCPNCVKSFKAEKQRTYHMKHECGQDVRCPKCNRRYKNRAKLTTHLNFECGKSLSCATCSKPFKYKSHLDTHTKHECDSCARLLPVIRNNLPKVSSKLLAKKTRFQCVSCNRGFKRRGDAMFHFKHECGVDGWTLPGSNSAVHVQGERQRFYCPTCDKSYKERRHLNTHVKYECGQDQRCVTCLKTFKQRSQLTTHVKHECGRELRCPSCGKRFSLMAKMKAHRKYTCKVSRDGFR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -