Basic Information

Insect: Brachyptera risi
Gene Symbol: -
Assembly: GCA_964007535.1
Location: OZ023332.1:26552856-26556781[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.00033 0.03 15.9 0.1 3 23 30 51 29 51 0.91

2 14 0.0053 0.47 12.1 0.1 1 20 58 77 58 78 0.95

3 14 0.0016 0.14 13.8 1.5 1 23 86 108 86 108 0.96

4 14 7.9e-07 7e-05 24.1 0.5 1 23 114 136 114 136 0.98

5 14 7.9e-05 0.007 17.8 1.4 1 23 350 372 350 372 0.96

6 14 0.0035 0.31 12.7 0.3 3 20 382 399 380 401 0.94

7 14 0.0003 0.027 16.0 3.1 1 20 432 451 432 454 0.93

8 14 0.043 3.8 9.2 0.0 1 23 459 482 459 482 0.97

9 14 5.7e-05 0.0051 18.3 0.1 1 23 488 510 488 510 0.98

10 14 0.00013 0.011 17.2 2.8 3 23 520 540 518 540 0.99

11 14 0.0096 0.85 11.3 0.5 3 23 548 568 546 568 0.97

12 14 0.018 1.6 10.4 0.3 1 23 574 599 574 599 0.95

13 14 0.096 8.5 8.1 0.1 1 23 614 636 614 636 0.97

14 14 0.00012 0.01 17.3 0.4 1 23 731 753 731 753 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.00033	0.03	15.9	0.1	3	23	30	51	29	51	0.91
2	14	0.0053	0.47	12.1	0.1	1	20	58	77	58	78	0.95
3	14	0.0016	0.14	13.8	1.5	1	23	86	108	86	108	0.96
4	14	7.9e-07	7e-05	24.1	0.5	1	23	114	136	114	136	0.98
5	14	7.9e-05	0.007	17.8	1.4	1	23	350	372	350	372	0.96
6	14	0.0035	0.31	12.7	0.3	3	20	382	399	380	401	0.94
7	14	0.0003	0.027	16.0	3.1	1	20	432	451	432	454	0.93
8	14	0.043	3.8	9.2	0.0	1	23	459	482	459	482	0.97
9	14	5.7e-05	0.0051	18.3	0.1	1	23	488	510	488	510	0.98
10	14	0.00013	0.011	17.2	2.8	3	23	520	540	518	540	0.99
11	14	0.0096	0.85	11.3	0.5	3	23	548	568	546	568	0.97
12	14	0.018	1.6	10.4	0.3	1	23	574	599	574	599	0.95
13	14	0.096	8.5	8.1	0.1	1	23	614	636	614	636	0.97
14	14	0.00012	0.01	17.3	0.4	1	23	731	753	731	753	0.98

Sequence Information

Coding Sequence: ATGGCTGTGGAGGCATTAAGTCAACTTGGAGGTATGTTCGACATGAGGCCCAACGTACCAACGTCATTTGTGGAGCCATCACCTCTATGTGATATCTGCGGGATGCAATTTATATCATCAAGTGAACTACGCAAACATGCCTCGGCGTCCCACCAACGTGTAGAACGTATTCATGTTTGTAGTGTATGTGGGGAGCGCTTTGAACGCAAGTTGGATTTGGGTAATCATATTGTGTGTCATCAAACAGAGAGACCACACTCTTGTCGAGTGTGCGGCAATTTATTTCGACGAAAAGCAGATCTTTACAATCATATGGTTAGCCACCAATTGAACAGACAACATCAATGTCCAGAGTGTGGTGTAGACTTTCAACGTCCATCTAGCCTTACAAATCATATGAAAATACATCAGTACCATCCTGGTAGATCAATGATTTCAGCTGCTCTTGCTGATCTAAGCAGAGAAACTAATGGAAATATACTCAAAATTCCCATTACTAAAATTGTAGAAGAAGATTTACAAGAGTTGATACCATTTGCcactgaagaaataataattccTCAAGCTGTATATCATGAAACTATAGGTATCACAAGTGAAAACCAAACTATCGGCAGCAGTAACATAGATTTGCCTGTAGGCTTAGCAGCATATGATGGAAACTCCAATGATGGAAATTTTTCATCACCATCAAATACTAATgttgattatcaaaatatacaaTTGGCCCAGCAGTCTGATACCAATGAGGAATtacatcattttaattatttcccAGATATTACTGAATGTACTACAGTTGATGTTGAAACTACCCTGGCCTCAACAAATAGTGATGAAAATTTCCCAGTGATAGGTAATTTCAAAAGTGACGAGTCAAATTTAAAATTGGACTCTGAAAAATTCAATAATGCGCCGGTGAAAGTAGAAGCTGTGCCTTACTTTCTTCCTGATGATTCTGACACTGCTGGAGAGGCAGTGTTTTCAGTAGACTCGAGTGGTCGTCAGTTTGTGACAATGCCGCCCAAGTCGGTAGGTGCGCGTCCACACATTTGTGGCCATTGTGGTACAGCTTTCAGTCGAGTTAAAGCTCTTCAGTCCCATGTGCGACTACATCAGGAGTACTGGGGTAATTCACTTGACTGCAAGAGATGTGCACATACATTCCCAGACTCTTCTGCTCTTCGGCGACATCAAGAGGATTGCAAAATTCAGCAGCGAAAACCTGAAAGCATTGAGAAAAATATCTTATCTACAAGACCTGTAGGCGTAGCACATGCTACGAAAGGAAAACATCCTTGCACTAATTGTGAGAAGAAGTTTACCACCAAACAAAAGCTATTCCGCCATATGTGGATTCATCGTAAAAAGCTGTACGCCTGTGAAGTGTGTGGCGTAAATATGGCTACTCAGGAAGCCCTAGACAACCATAGACGCTCGCTTCATCCTGGTGACTCCCCTTTTGTTTGCCAGTCGTGTGGGAAAAGCTTTGCTAGTCGTCAAGGTCTTTGGGAGCATGGCAGGGTCCACGGTGGTACTAACACAAGTTTATTCTGGTGCCATGAGTGCAATAAAAGCTTTTCCAGTCGTCAGGGTTACTTAATTCACACCCGGACCCATACAgGTGAACGTCCTTACGGTTGTCGGTTCTGCTTGAAAGCATTTCGGGATGGCGGCACACTGCGTAAACACGAACGCATCCACACTGGAGAACGGCCTCATGTCTGCCCAATTTCCACGTGTTATCGGGCTTTCAACCAAAAAGTTGTACTTCGTGAACATGTCCGTTGGGTCCACGCTGCCAACCGTTCTGGAGAAGAAAACGATGATGAGCATTTATATGTATGTCAAGTTTGTAACCTGCTACTTGGTGACAGAGAGGAGCTTTGTGCTCATATTGTAAAACATAGTGACGATCTTGCAAAGGCTGCAAAAAACAAAGATAGTACTACTTCAGCTACTGCTGTACCAGTAAAGACTGCAAAGTCAAAGAAGTTGGTTTCAGTCAAAAAGACTTCAAAGAAGACAAAATTACTTGTACCATCTAAATTAATAGCAGCAAAAACTGAAATAACAACAACTATTCTATCTAATGGTTTGACTTCTAGCCTGGTAGAAAAATTGAATGGTCCATTAGCACCATCAAAATCATATACTTTTGTGGGCGATGTGCCTACAGTTAAAGAGGAACACACCTGTGGAATGTGTGATGAAACATTTGGCGATCGAGTACAACTTTTAAGCCATGTTCGTATTCATATTTAA
Protein Sequence: MAVEALSQLGGMFDMRPNVPTSFVEPSPLCDICGMQFISSSELRKHASASHQRVERIHVCSVCGERFERKLDLGNHIVCHQTERPHSCRVCGNLFRRKADLYNHMVSHQLNRQHQCPECGVDFQRPSSLTNHMKIHQYHPGRSMISAALADLSRETNGNILKIPITKIVEEDLQELIPFATEEIIIPQAVYHETIGITSENQTIGSSNIDLPVGLAAYDGNSNDGNFSSPSNTNVDYQNIQLAQQSDTNEELHHFNYFPDITECTTVDVETTLASTNSDENFPVIGNFKSDESNLKLDSEKFNNAPVKVEAVPYFLPDDSDTAGEAVFSVDSSGRQFVTMPPKSVGARPHICGHCGTAFSRVKALQSHVRLHQEYWGNSLDCKRCAHTFPDSSALRRHQEDCKIQQRKPESIEKNILSTRPVGVAHATKGKHPCTNCEKKFTTKQKLFRHMWIHRKKLYACEVCGVNMATQEALDNHRRSLHPGDSPFVCQSCGKSFASRQGLWEHGRVHGGTNTSLFWCHECNKSFSSRQGYLIHTRTHTGERPYGCRFCLKAFRDGGTLRKHERIHTGERPHVCPISTCYRAFNQKVVLREHVRWVHAANRSGEENDDEHLYVCQVCNLLLGDREELCAHIVKHSDDLAKAAKNKDSTTSATAVPVKTAKSKKLVSVKKTSKKTKLLVPSKLIAAKTEITTTILSNGLTSSLVEKLNGPLAPSKSYTFVGDVPTVKEEHTCGMCDETFGDRVQLLSHVRIHI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -