Basic Information

Insect: Brachyptera risi
Gene Symbol: -
Assembly: GCA_964007535.1
Location: OZ023328.1:19529148-19545785[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 2.7e-06 0.00024 22.5 1.2 3 23 230 250 229 250 0.98

2 16 0.023 2 10.1 0.2 1 23 255 277 255 277 0.97

3 16 7.6e-05 0.0067 17.9 3.3 1 23 346 368 346 368 0.98

4 16 0.00082 0.073 14.6 4.7 3 23 372 392 372 392 0.99

5 16 0.031 2.8 9.7 0.4 1 23 405 427 405 427 0.95

6 16 0.0012 0.1 14.1 1.2 1 23 455 477 455 477 0.97

7 16 4.4e-05 0.0039 18.6 0.7 1 23 488 510 488 510 0.98

8 16 0.00031 0.028 16.0 0.6 2 23 551 572 550 572 0.98

9 16 0.011 0.96 11.1 1.0 1 23 578 601 578 601 0.97

10 16 4.2e-05 0.0037 18.7 1.9 1 23 649 672 649 672 0.97

11 16 3.5e-05 0.0031 18.9 3.4 1 23 678 700 678 700 0.98

12 16 0.007 0.62 11.7 0.1 1 23 714 736 714 736 0.97

13 16 0.0026 0.23 13.1 3.1 2 21 746 765 746 766 0.93

14 16 0.0029 0.26 12.9 3.4 2 23 819 840 818 840 0.97

15 16 0.17 15 7.4 0.0 2 23 873 894 872 894 0.97

16 16 5.3e-06 0.00047 21.5 1.1 2 23 918 939 917 939 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	2.7e-06	0.00024	22.5	1.2	3	23	230	250	229	250	0.98
2	16	0.023	2	10.1	0.2	1	23	255	277	255	277	0.97
3	16	7.6e-05	0.0067	17.9	3.3	1	23	346	368	346	368	0.98
4	16	0.00082	0.073	14.6	4.7	3	23	372	392	372	392	0.99
5	16	0.031	2.8	9.7	0.4	1	23	405	427	405	427	0.95
6	16	0.0012	0.1	14.1	1.2	1	23	455	477	455	477	0.97
7	16	4.4e-05	0.0039	18.6	0.7	1	23	488	510	488	510	0.98
8	16	0.00031	0.028	16.0	0.6	2	23	551	572	550	572	0.98
9	16	0.011	0.96	11.1	1.0	1	23	578	601	578	601	0.97
10	16	4.2e-05	0.0037	18.7	1.9	1	23	649	672	649	672	0.97
11	16	3.5e-05	0.0031	18.9	3.4	1	23	678	700	678	700	0.98
12	16	0.007	0.62	11.7	0.1	1	23	714	736	714	736	0.97
13	16	0.0026	0.23	13.1	3.1	2	21	746	765	746	766	0.93
14	16	0.0029	0.26	12.9	3.4	2	23	819	840	818	840	0.97
15	16	0.17	15	7.4	0.0	2	23	873	894	872	894	0.97
16	16	5.3e-06	0.00047	21.5	1.1	2	23	918	939	917	939	0.96

Sequence Information

Coding Sequence: ATGGCTCACTCTCCAACCAACAGAACTATGAGTGAGGTGTGCCGTCTGTGTGCCTCAACTGACGGCAAGAAGTTACCGATATTTGGAGATGTCGAGGATCATGAACCTCTTTCGTACAGAATCTTGATTTGTGTCTCTGTTGAGGTGGCAAGTGATGATGTTCTCTCTAGACTGGTCTGTGAGTCGTGTTTGGATTCTGTCAATAACTGGTTCCTCTTCAAGCAGCTGTGCGATTCGGCACAGGAAACGCAGAAAAAATGGTTGGATCAACAATCAGCAGATGCAAGTGTTCTCGAGGAGGAAGTCATTGTCAAAACGGAGCCCATTGAGGATGAAGCACACGATGAAGAACAGGAGCCATGTgatTTAGAAATCAAACAGGAGGACCTTGAACTTTCCGATGGAGAGAGTCAACAAGGGACAGCGTCAGTTTTGATGGCAATCGATGatcctctctgtctctcttcatTGGTGCAACACCGCAGCCTGCAGCCGCGTCCAGTGAAACGAGAACGAGGTACTCGAGCAAACGTGGAAAATATCGACCCTGAAGAAATTGACAAAGATATCATGGATCGTGTGGGTTTGTCCACAAACAACTCTGCTGCTACTCCTGACAATGATATCAAACTTATCAATCATAAACGGAAAGGAGGAGTCAGTTTGTTGTtgtcaaaaaaaaacatctgtcCCACTTGTAATAAGGAGTTTAATACTAAGAATTCACTTAGAAGACATATACTTACTCACACGGGCCATACATACGTTTGCAAACTCTGTCAACAACCTTACCTATCAGGTTCGTCGCTTTGGCGTCACATGCAAGCCCATAAAGGTGTGGCCCCATTTAAATGTTCCCCATGTCGTATCGAGTTTGTAGGCCAAGCAGAGTTTGACGTACATCGTTTGACATGTACTCTTTTATCCCCAGTGAAACGCAAGGTTATTCCCGTGAAAAGCAGTGCCAGCGTCATACCTCTAAAGATAAATGGCAAGAGTCTCAAAACTGTTTCTTTGAAGAGTAAGAGAAAGACTTTTAACTGCACACTATGTACAAAATTCTTTTTCAGTAAAATAAATCTCACAAATCACATAAAAACTCACCAAACATGGTGTCGATATTGTCACCGAGATTTTAAAAACAGAGCTGGCTTTCAAAATCACATGAAGACACATGCGTCAAAAATCAAGGATGGTAAAAGAGTCAAACGTTATTTATGCAAGTTTTGTCCAAAAGTTTTGTCACAATGGAACTTGGCTGTCAAACATAAACAGAGTCACTTGGACTTGCAAGCTCTCAATGATATGCCAACATTGAAGCCAAAAACTGAATCTACTGTTAAAAAGAAGAATATCAAACCATATAATTGCCTGGATTGTTCCGAAACATTTGTCTACTGGAAACAGTACATGAAACATAAAGAGATGCATACTGTTAATACAATAGGCTCACCAAGGCGTTATACATGCACAATTTGCAAGGAACAGTTCAAAGGTTGGTACAGTCTCGCCCGCCATAGAAGCGTTCATGAGAGTAATGCGTCTTCAACATCAGTTGTTAAACACAATACTGCTGTTGAGTCGAAGCTTCCTAGCCTTGAAGAAAAAACTGTGTTGAATCCTATTGCAGTTGCCAGAAAGTCAAACAATAAGTGCAATATTTGTGACCGGGAATTTAAAAATGCCACAATACTGGAAAGGCACTTGTCGACACATTCAAAGGCTAAAAATTTCAGCTGCCATGTTTGTGGCATTCGGATGAAGTATGCATCTTCTGTTCAGCAGCATTTAAAGTCGGTTCATAATGTAGTGTACCAGTACAGTCTTATAAAACCTGATGTAAGAAATGACGACAGTGAAGGGGAAAACATAACAATGCCAACTCTGAAGAAGGAAAGTGGTGCCATAGTGCCAAGACCGTCAAGTGAGACCTCCTCGCGCACATACTCGTGTCCAGTTTGTAGTAAGCAGTTTAGTACCAAATCGCTGATGACATCTCACCATCAAATCATTCATAAGGGTGCAACTGTTTACCGATGTAAACATTGTCCTCAAATGTATCGCCAACAAAGCACTTTAGTTCGTCATGAGTCAACTCATCTGAAGGCTGAAAGTGAATTGTCTGAGATACCTTCGATGTTTACTTGTGAAGGCTGTCCACTAACATTCGACAATGCAGACGCTCGAGATTTACATCAACGCTGGCACAACAGAAAGAATGGAGATGCAACAAGAGAATGTACCTATTGCCATAAAAAGTTTAGCAGTGTGAGCAACGTCCACAGACACAAAAAGATATGTCGGAGAATAGATACCAACGCAGCTGTTGCGTTATCTAAAAAAGCAGTACAAGTGTCTGGACAGATTGCAAATAAGAACATGAAACAAGATTCGGGAAACACCACCCAGTCTTCGAGTAGTTTGCCCGCAAAACAATCATCACAAAATGCCTTGACTTGCGACGTTTGTTCGAAGCAGTTCATTTATCAACGTTCCTTTCATAACCATCAGCGACTGCACATCAATAACCCAGCTGTCGAGCCGGAATCAGAAACAGTAGCAGTTGTGCCAAAACTAGTTGCAACTTCAAAGGCACCAATACTCGTCAAGTCATGGCAATGTGATCTGTGTCCTCAAGCATTTCTGGGGCAGAAGGCTCTGGCGATTCATCGCAATATGCATTTAAGAAAGTTAGCAATCTCATCAACCAATAAGGCTGCTGCTCCTAAGCCTATGCAAGTTGCATCGTTAACTTGTAATGTTTGTAAGAAAGTGTTTAGTACATCTTCAGGATTGAGTCGGCATAGGCAATTACATATACGAGAAATTTTTTCGTCCGGAACCATTGCTAAGGTTAAACGGAAATCTAAAAAGAAAAAGGTTCAAGCCAAAGTAGTAGAAGAGACTGTGCTAAACAATTGA
Protein Sequence: MAHSPTNRTMSEVCRLCASTDGKKLPIFGDVEDHEPLSYRILICVSVEVASDDVLSRLVCESCLDSVNNWFLFKQLCDSAQETQKKWLDQQSADASVLEEEVIVKTEPIEDEAHDEEQEPCDLEIKQEDLELSDGESQQGTASVLMAIDDPLCLSSLVQHRSLQPRPVKRERGTRANVENIDPEEIDKDIMDRVGLSTNNSAATPDNDIKLINHKRKGGVSLLLSKKNICPTCNKEFNTKNSLRRHILTHTGHTYVCKLCQQPYLSGSSLWRHMQAHKGVAPFKCSPCRIEFVGQAEFDVHRLTCTLLSPVKRKVIPVKSSASVIPLKINGKSLKTVSLKSKRKTFNCTLCTKFFFSKINLTNHIKTHQTWCRYCHRDFKNRAGFQNHMKTHASKIKDGKRVKRYLCKFCPKVLSQWNLAVKHKQSHLDLQALNDMPTLKPKTESTVKKKNIKPYNCLDCSETFVYWKQYMKHKEMHTVNTIGSPRRYTCTICKEQFKGWYSLARHRSVHESNASSTSVVKHNTAVESKLPSLEEKTVLNPIAVARKSNNKCNICDREFKNATILERHLSTHSKAKNFSCHVCGIRMKYASSVQQHLKSVHNVVYQYSLIKPDVRNDDSEGENITMPTLKKESGAIVPRPSSETSSRTYSCPVCSKQFSTKSLMTSHHQIIHKGATVYRCKHCPQMYRQQSTLVRHESTHLKAESELSEIPSMFTCEGCPLTFDNADARDLHQRWHNRKNGDATRECTYCHKKFSSVSNVHRHKKICRRIDTNAAVALSKKAVQVSGQIANKNMKQDSGNTTQSSSSLPAKQSSQNALTCDVCSKQFIYQRSFHNHQRLHINNPAVEPESETVAVVPKLVATSKAPILVKSWQCDLCPQAFLGQKALAIHRNMHLRKLAISSTNKAAAPKPMQVASLTCNVCKKVFSTSSGLSRHRQLHIREIFSSGTIAKVKRKSKKKKVQAKVVEETVLNN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -