Bris034868.1
Basic Information
- Insect
- Brachyptera risi
- Gene Symbol
- zfh1
- Assembly
- GCA_964007535.1
- Location
- OZ023338.1:10256286-10260448[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 4e-05 0.0035 18.8 0.6 1 23 73 96 73 96 0.96 2 15 0.00063 0.056 15.0 0.2 2 23 122 143 121 143 0.97 3 15 7.9e-05 0.007 17.8 3.5 1 23 159 181 159 181 0.98 4 15 1.2e-06 0.00011 23.5 1.7 3 23 189 209 187 209 0.97 5 15 6.4e-06 0.00056 21.3 1.4 1 23 216 238 216 238 0.98 6 15 5.2e-05 0.0046 18.4 0.2 1 23 244 266 244 266 0.96 7 15 0.4 36 6.2 0.2 1 23 271 294 271 294 0.92 8 15 0.18 16 7.3 3.1 2 23 303 324 302 324 0.95 9 15 0.00032 0.028 15.9 2.0 1 23 338 361 338 361 0.97 10 15 0.18 16 7.2 0.8 2 23 368 390 367 390 0.93 11 15 7e-05 0.0062 18.0 0.4 1 23 396 419 396 419 0.92 12 15 0.00032 0.029 15.9 1.4 2 23 424 445 423 445 0.96 13 15 0.00017 0.015 16.8 3.1 2 23 451 473 450 473 0.94 14 15 3.2e-06 0.00028 22.2 1.4 3 23 482 502 481 502 0.98 15 15 0.045 4 9.2 0.0 6 23 512 530 511 530 0.95
Sequence Information
- Coding Sequence
- ATGTCGGTGTTACAGGAGGCGACAAAAGAGCCGTCCGACAGCTCTGCCGTTGCTACGGACGACGACGCCAGCCGTCAGACCGCCTCTCCGTCAAAACTCGACGTGGACGAGTCGCTGTTGATTCCCGAAGTCCTTCTGGAGACGTCGTCTTCCAACAGGAGCACGAGAATTACCCGGCAACGCGGCAAGAAACCGCGCGTCGACCAGGACGAATCCTTCTCGTGTGCCGCTTGCGGAGAAACTCTGACAACGAAACAGAACCTGAAACGTCACATTCGTCTGAAACACTCTGCCGCGTACAAGTGCGACGATCAGGACAGAACTCACGAGTGTCCCGATGAAGACGTTAAGAGAGTGCCCGTGAAGTGTGCGCTGTGCGGTAATACGTACCCCGGTCAGCGCAGCTTGAGGCGCCATCTGAAGATTCACGCGAGAGATTCACGCGTGGCGAGCAGCGAGCCTGCGGTGACGCAGTTTCAGTGCAAGGATTGTAACAAGTACCTGGCGTCCAACTCGAGCCTCACCCGCCACGTCAAGCACCATCAGGGCAGCCTTCCCTGCTTGTGCCAGCAGTGTGGTAAGAGCTTCGTCAACGAGTCTGCCCTGAAGAGGCACATGGTCACCCACGACAGCGGTGTCGCGCCGCACCAATGTAACGCCTGCCAGAAAACCTTCGCCACAGCCTACTATCTGATCATCCACCTCCGCACCCACACCGGCGAGCTCCCCTTCCCCTGCGAACAGTGCGGCAAGCGCTTCACCAGCGCCCTGGGCCTGCGCAATCACGCCACCAGCCACCGCACCAAGCCCTTCTCGTGCGGCCCGTGCGGCTTATCGTACGGCCGTCAGACCCGTCTCGACCGTCACAACCGGGCCGTCCACCCGTCAGCCCTCGTCGACAACCTCTCCTGCACCGTCTGTCGTGCGTCTCTCCTCAACCGCCGTCACATGACGCGCCACATGAAGACCCACGTGGCGGGCTACGTCCCCTCCTCGCTCAAAGCCCGGCGCTTTGTGTGCGATACATGCTCCAAGCGCTTCACCGAGCTGCGCTACGTCAAGCGCCACATCCGCAACACGCACCTCGACGTCAGCTTGCAACCGTGTCCGCACTGCGACAATGTCTACTCCATCGGGGGCAAGCTCCGAGACCACCTGGCCAGCTGTCACTCGTCGGAGCGCAAGCACCCGTGTCCACGCTGCGACATGTCCTTCGCGACCGCGTCTTATCTCCAGCAGCACTCGGCCCGCGTCCACGACAAGGCTCTGCGGTGTCGGCACTGCGACAAGCGCTTTGGCGTGCCCTACAGCCTCAAGCTGCACGAGATAACGCACTCGGAGCCGACGCTGCCGTGTCCGCACTGCGACAAGATGTTCCACCACCGCGTCGGGCTGAACAAGCACGTCAAGGAGGTACACGCGACACACGCGTCGAAGCCGGCCTGCGACAAGTGCGACAAGGTGTTCAGCACGGCGCATAGTCTTAAGATACACGCGAGAAGACACTCGGGGGACAAGCCGTTCGGGTGCGCGTGCGGACGGGCGTACACGTCGGCCAACGCTCTGAAGAGTCACGCGCGGGCGGCTCACGGCAACGCGGCGGTCTGA
- Protein Sequence
- MSVLQEATKEPSDSSAVATDDDASRQTASPSKLDVDESLLIPEVLLETSSSNRSTRITRQRGKKPRVDQDESFSCAACGETLTTKQNLKRHIRLKHSAAYKCDDQDRTHECPDEDVKRVPVKCALCGNTYPGQRSLRRHLKIHARDSRVASSEPAVTQFQCKDCNKYLASNSSLTRHVKHHQGSLPCLCQQCGKSFVNESALKRHMVTHDSGVAPHQCNACQKTFATAYYLIIHLRTHTGELPFPCEQCGKRFTSALGLRNHATSHRTKPFSCGPCGLSYGRQTRLDRHNRAVHPSALVDNLSCTVCRASLLNRRHMTRHMKTHVAGYVPSSLKARRFVCDTCSKRFTELRYVKRHIRNTHLDVSLQPCPHCDNVYSIGGKLRDHLASCHSSERKHPCPRCDMSFATASYLQQHSARVHDKALRCRHCDKRFGVPYSLKLHEITHSEPTLPCPHCDKMFHHRVGLNKHVKEVHATHASKPACDKCDKVFSTAHSLKIHARRHSGDKPFGCACGRAYTSANALKSHARAAHGNAAV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -