Bris036048.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Brachyptera risi
Gene Symbol
-
Assembly
GCA_964007535.1
Location
OZ023339.1:2153619-2161271[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 20 2.5e-05 0.0022 19.4 0.2 2 23 161 182 160 182 0.97
2 20 6.9e-05 0.0061 18.0 2.2 1 23 188 210 188 210 0.98
3 20 0.00013 0.012 17.1 3.1 1 23 216 238 216 238 0.98
4 20 0.0003 0.027 16.0 4.9 1 23 244 266 244 266 0.99
5 20 9.3e-05 0.0082 17.6 2.3 1 23 272 294 272 294 0.98
6 20 0.00039 0.035 15.6 5.5 1 23 300 322 300 322 0.97
7 20 0.053 4.7 9.0 4.2 1 23 328 350 328 350 0.97
8 20 0.0015 0.13 13.8 5.5 1 23 356 378 356 378 0.98
9 20 0.0003 0.027 16.0 2.0 1 23 384 406 384 406 0.98
10 20 1.6e-05 0.0014 20.0 4.9 1 23 412 434 412 434 0.99
11 20 0.0022 0.2 13.3 3.4 1 23 440 462 440 462 0.96
12 20 9.3e-05 0.0082 17.6 2.0 1 23 468 490 468 490 0.98
13 20 0.0025 0.22 13.1 0.8 1 23 496 518 496 518 0.98
14 20 0.0018 0.16 13.6 3.3 1 23 522 544 522 544 0.98
15 20 0.0005 0.044 15.3 6.1 1 23 550 572 550 572 0.98
16 20 1.9e-05 0.0016 19.8 1.2 1 23 578 600 578 600 0.97
17 20 0.00026 0.023 16.2 2.5 1 23 606 628 606 628 0.98
18 20 0.012 1.1 11.0 2.4 2 23 633 654 632 654 0.97
19 20 2.9 2.6e+02 3.5 0.0 13 23 661 671 658 671 0.89
20 20 0.017 1.5 10.5 1.5 1 23 677 700 677 700 0.97

Sequence Information

Coding Sequence
ATGGACCTGGATCCTCTAAGCATGATGGAAGTGGCAGAAGATCATACGTGCGCTGTCATGAAAGAAGAACCATGGGATCAGTTTGGATCAGCGGCTACTCATGAGGACGATCCCAGCAACTATTGCCAAGTAACGGAACAGCTCTTGGAGCCGGCCGCTCCAGGCACGGTACCGAAGGAGGAAGTACTGGATATCAAGGATGAATGTCTCGAGACGGAAGAACTAGACGAGATTGCGTTCGTAGCTATCAAGGAGGAACCTGCTGATGAAATGTCCGACGACCAAGGATACGATGTAACCATGGATACGGAGGATTTTGCTGAGGAAGACACGGACCCCATGTCAACCAGAACAGCATCTACGAGAGTGGACAATGGCAGAGAAACTCCGACGCGAGCCACTACCGGGATAAAGAACAAGAGAGGAAAGTTGAACAAGAACTTGAAAGGCAATAAGAATAATGACGCAGTTACAAACGATACTTGCAGCGTATGTGGCTACACGACTGACAACAAGTATTATCTGAAGGCCCACATGTTGATTCATACCGGTGACCTGCCGTTCCAGTGCGAGGAGTGCTCGTATAAATGCAATCGTGCCGGCACATTGAAAACGCACATGATGATTCACAGCGGGGAGCAGCCGTATCAGTGCACAGAATGTGCTTATAAATGCAGAAAAAGCAGTGATTTGAAAAGACATATTTCGATACACACCGGTGAACAGCCTTTTCAGTGCAGTCGATGTACGTACAAGTGCAGGCAGTCTGGCAGTCTGAACACGCACATGATGACACACACAGGTAGACTGCCGTTCGAGTGCACGGAATGCTCGTACAAGTGCAACCAGGCAGGTAGCTTGAAGACACACATGATGATGCATACCGGCGAGAAGCCGTTCCATTGTACGGACTGCGAATATAAGTGCCGAACATCTAGTACTCTGAACTCTCACATGTTGATACACACGGGCGAGCAACCGTTCCATTGCATGAAGTGTCCTTTCAAGTGCAACCAAGTTGGTACTTTGACGACGCACATGATGGTACATTCGAATGTACAGCCGTTCGAGTGTAACCAGTGTTCGTTCAAGTGCAGAAAACCGAGTGACCTGAAAAGACATTCCAGGAGACACACGGGCGAACAACCTTTCCAGTGCCAGGATTGTTCCTTCAAATGCAATCAGGCCGGGAGTTTGAAACAACACATAATGATACACACAGGCGAACAACCTTTCCAGTGCATGGAGTGTAATTATAAATGCAGACAGTCGAGCGATCTGAAAAGACACATGTCGACTCATACCCTGGTACATCCGTTCCATTGTGAGGTCTGTTCATTTACATGCAGAAAACCAAGTGAGTTGAGACGACATGCCCTGATACACACTGATGAACAGCCTTTCCAGTGCTTGGAATGTAATTATAAATGCAATCAAGCCGGCAGTTTGAAGACACATATGATGATCCATACCGGTGAACAACCTTTCCAGTGCAATCAATGCTCTTTCAAGAGCCGATTATCCGCAGGCCTAACCAGACACATGTTGATACATAACGCAGTGTTCCAATGCACCAAGTGTCCGTATAACTGTCGCTCTACAAGAGCTCTCAAGTCCCACATGGCAAACCATTCCGCTGAACATCCCTTCCAATGCAAGGAATGTTTCTACAAGTGCAAGAGATCTAATAATATGAAACGTCACATGTTGATACATACAAACGAGCAGCCATTCAACTGTAAGGAATGTCCTTTTGTGTGTAGGTCTTCCGGAGATCTGAATAGACACATGTTGAttcatactggtgagaaaccatTCCAGTGCAAGGAGTGTTCTTTTAGATGCAGATCTTCGGGCGATCTGAACAGACACGTATTGATTCATAACAGAGAGCTTCAGTGTAGTGAGTGTACTTTCAAGTGTCGTTCCTCGGTCGCTCTGAGCGAGCACATGACGAGGCATAACGGTGAATTGCCGTACGAGAGTGAGCTCGAGAAACACATGTTGGTTCATACCGGTGTGATGACGTATGAGTGTGATGGTTGTAGTTTCAAGTGTCAACGTAAATCTGAGATATCTGTTCATATAAAGTCAGTTCACTTGGAGAACTAA
Protein Sequence
MDLDPLSMMEVAEDHTCAVMKEEPWDQFGSAATHEDDPSNYCQVTEQLLEPAAPGTVPKEEVLDIKDECLETEELDEIAFVAIKEEPADEMSDDQGYDVTMDTEDFAEEDTDPMSTRTASTRVDNGRETPTRATTGIKNKRGKLNKNLKGNKNNDAVTNDTCSVCGYTTDNKYYLKAHMLIHTGDLPFQCEECSYKCNRAGTLKTHMMIHSGEQPYQCTECAYKCRKSSDLKRHISIHTGEQPFQCSRCTYKCRQSGSLNTHMMTHTGRLPFECTECSYKCNQAGSLKTHMMMHTGEKPFHCTDCEYKCRTSSTLNSHMLIHTGEQPFHCMKCPFKCNQVGTLTTHMMVHSNVQPFECNQCSFKCRKPSDLKRHSRRHTGEQPFQCQDCSFKCNQAGSLKQHIMIHTGEQPFQCMECNYKCRQSSDLKRHMSTHTLVHPFHCEVCSFTCRKPSELRRHALIHTDEQPFQCLECNYKCNQAGSLKTHMMIHTGEQPFQCNQCSFKSRLSAGLTRHMLIHNAVFQCTKCPYNCRSTRALKSHMANHSAEHPFQCKECFYKCKRSNNMKRHMLIHTNEQPFNCKECPFVCRSSGDLNRHMLIHTGEKPFQCKECSFRCRSSGDLNRHVLIHNRELQCSECTFKCRSSVALSEHMTRHNGELPYESELEKHMLVHTGVMTYECDGCSFKCQRKSEISVHIKSVHLEN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-