Bris024074.1
Basic Information
- Insect
- Brachyptera risi
- Gene Symbol
- lola
- Assembly
- GCA_964007535.1
- Location
- OZ023333.1:10241692-10282647[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 29 0.00078 0.069 14.7 1.5 1 20 59 78 59 80 0.94 2 29 0.00035 0.031 15.8 1.5 1 21 89 109 89 110 0.96 3 29 0.024 2.2 10.0 1.1 1 20 134 153 134 155 0.94 4 29 5.1e-05 0.0045 18.4 1.6 1 21 164 184 164 185 0.95 5 29 0.0038 0.34 12.5 0.9 1 20 210 229 210 231 0.93 6 29 0.0062 0.55 11.9 3.8 1 21 240 260 240 261 0.95 7 29 0.0077 0.68 11.6 1.0 2 21 268 288 267 289 0.92 8 29 1.2 1.1e+02 4.6 0.1 1 13 296 308 296 312 0.89 9 29 0.15 14 7.5 1.7 1 17 330 346 330 350 0.90 10 29 0.00021 0.019 16.5 2.9 1 21 360 380 360 381 0.96 11 29 0.04 3.5 9.3 0.4 2 21 388 407 387 408 0.93 12 29 0.16 14 7.5 2.5 2 21 416 435 415 436 0.93 13 29 0.00016 0.014 16.9 0.6 1 21 460 480 460 481 0.93 14 29 0.00039 0.034 15.7 4.2 1 21 490 510 490 511 0.96 15 29 0.00084 0.075 14.6 0.7 1 21 540 560 540 561 0.90 16 29 4.5e-06 0.0004 21.8 3.6 1 22 601 622 601 622 0.97 17 29 0.0027 0.24 13.0 2.1 1 23 630 653 630 653 0.97 18 29 0.0015 0.13 13.8 5.7 1 21 715 735 715 736 0.96 19 29 2 1.8e+02 4.0 0.5 2 10 743 751 742 751 0.91 20 29 0.052 4.6 9.0 2.1 1 21 772 792 772 793 0.96 21 29 0.025 2.2 10.0 4.1 1 21 813 833 813 834 0.96 22 29 8.4 7.5e+02 2.0 1.7 1 21 859 879 859 880 0.91 23 29 0.00048 0.042 15.4 3.5 2 21 887 906 886 907 0.94 24 29 2 1.7e+02 4.0 1.4 1 21 940 960 940 961 0.95 25 29 0.0021 0.18 13.4 2.9 2 20 968 986 967 988 0.93 26 29 3.1e-05 0.0028 19.1 2.2 3 21 1022 1040 1021 1041 0.95 27 29 0.00023 0.02 16.4 1.7 1 20 1049 1068 1049 1070 0.95 28 29 0.00077 0.068 14.7 1.2 1 21 1129 1149 1129 1150 0.95 29 29 0.0029 0.26 12.9 0.9 1 23 1158 1180 1158 1180 0.98
Sequence Information
- Coding Sequence
- ATGCTCTTCGATAAGTCGTATCCGACCAGCACTGCGATTTTCCATCTCTTTGAAATTCGGTCTATAGCGTTCCCGATCGAGACTACGAACTATCGAGAACTCAATCAAGTTGCTGTGTGGATACAACCTATTGCTGTCCGTGCATTGGAAACTCTCACGTATGATGCTTCAGGTTTCCACTGTGACCGGTGCGGCAAGAGGTTCAAAAACAAGCGAAGTCTAGTGCTTCACGTCACGAATGTGTGTGGTTTCCCCAAGAAATCTTTCACATGCCCATCATGCTTCAAAAGCTATTCACGTAAAACAGATCTAAGCGCTCATATAAAACACGCGTGTGTTGCTGCTCCGACGCAACCTGATTCTGTTTGTACATCGGAGAGTCTCAAGGATCCGTCTCGATTCTACTGTGCCCGCTGCACCAAGAACTATTCATCCAAGAGAAGTCTGGTCATCCATATTTCACATATGTGTGGTATACCCAAGAAATCTTTCGTCTGTCCCACATGCTTTAAACGCTTCTCCTCCAAATCTACCCTGATGACTCATATCAATCACGATTGTGCTCCTGTTTGGGCGAATCCCATCACTGTCCGTGCATTGGATAGCCTCAAGTATGATACGTCACATTTTCACTGTGATCGCTGCAGTAAAAGCTTCAAAACCAAGCGAGGTCTAGTCCTCCACGTTTCGATCGTGTGTGGTGTTCCCAAACAATCTTTCATATGTCCAGCATGTGATAAATGTTTCACACGTGATAAATGCTTGATGGCTCACTTGAGGCACGAGTGTGGTAAAAGTTTACAATGTCACATCTGCAAGAAGACGACTTTCACCACCAGGAGCGGCTTGATCACGCACATCAAAAGTGGTTGTGATAGACAATTGTTTCGATGTGTCAACTGTCCGAAAGAATTCCACCGTCAAGTTGCTGTTTGGACCCCACCCGATTGTATCCGTGAATTGGAGAGCCTTGGCGATCCGTCTCGTTATCACTGTGACCGCTGCGACAAGATCTTCGAAACCAAGCGAGATCTAGTCTGCCACGTTACACTTATGTGTGGTGTGCCCAAACAATGTTTCATATGTCCATCATGTAACAAATGTTATTCCCAAAAGAACCATTTAGCATCTCATATCAGACACGAGTGTGGTAAATGTTTGCAATGCAATGCCTGCAAGAAGACATTCATGACTAAAACTGGGCTGGATACGCACGTGAAAAGTGCTTGTGATAAGCAATCATTAGAATGTAGTAAATGCGCGAAAGAATTCCATCGCCAAGCAACATTGACATATCATAAGAAACATGAATGTGTTGGTGTTTGGGCGCAACGTATAGCTGTCCGTAAAGTGGAGAGTCTGACTGAATCATCACGTTTCAACTGTGAGCGGTGCGGTAAGAGTTACAAGAACAAACAATCTCTGACAATCCACGTTTCCACGGAGTGCGGTGCGACCAAGAAGTCATACCGCTGTCCTACATGTGACAAATGCTATTCGCGTGAGAAACATCTGATGGGTCATATAAAACACGAGTGTGATGATCCTCTTGAGTTTCTGTTTGTTGCCACATCGCCCGCCCCAGTGACGTCAGTGGTACAGATGCCGCCTCTGGTATTCCCCTGTGTGCCGTGTGGCAGATCGTACAAACGTAAATCAGATCTCAACAGGCACAAGAAGTTCGAGTGCGGGAAACCAGCCACGTTCTGTTGTATCTTCTGTCCGTATCGCGTTGCTGAAATGTGGCGAGAGACCACGTGGTCCGACACGACACAACTCACGCAAGGAGAGCGACCCCGCTATCAATGTACCATGTGCAGTAAGAGCTACAAGCAGAAGTTTCACTTGACGAGACACATGAGAATAGAGTGTAATAAAGAGCCCAGGTTCCAGTGTCAATATTGTTCCTACATAACTAAATACAATGGAAGTCTGCAAACTCATGTTCGGAATAAACATAGAGACATGGTGTTGGTGCGGGTCGGTGCTCGTCCAACGCAAGAAGCAGTAAACTTCTCGAATGTTCTGTTTGCTTCAAGAGGTATCAGTCTGTGGAGAGCTTGGTTCGACATGTCAAGTGGTGGTCACTCGATGCACATGTTCATCACCTCGGTTGCTAATCGTCAAACTCCTTCAGTGCGCTTCCATTGTCCTAACTGCAAGAAAAGCTACACGCAGAAAAAGAAATTGACTTATCACATGAAACACGAATGTGGGAAAGACTTGCGTTGTCCGTATTGTAATAAACAATTTCTCTACGGGACGATGCCAATTGAATTCGTTTCGGTGTACGATCCACTGGAGATGAACCGCTTCCGATGTGCGGGCTGTTCCAGTAGCTTCAAAGAGAAGAGAAAGTTGACCTATCACATGAATCATGAGTGCGGCAAAGATCTCCACTCGATGCGATTTAGTCTCAGCTCCGAAACACAAAGTTTCCAATGTCCCACGTGCGATATGTGCTACAAGAAGAAATGGAGGCTGACTTATCATATAAAACACGAGTGTGGTTGGTCACACTCACTTCCATATGTTCACGGCTCGGTCGTCAGTCAGCAGAAAATATCCCAGCGTTTTCAATGTATATCCTGCAATAAGAGTTATAACGCCGAAAGAAATATGACGTATCACCAGAAGCATGAGTGCGGGAAAGTTCTACGTTGTCCAACATGCAGTAAACAGTTCAAGTACAAATCTCATTTGTTCACACACATTAACCACGATTGTGGCAAGGAGCTACGCTGTCCCACATATTTGCCGGATTTGCTTCCAATTCTCATCGGTTCTGTTGTCAGCCTTCAGAGTCCATCACAGCGCTTCCAATGTATGAAATGCGTCGCGAGTTACAAGGTTGAGAGTCGTCTGTCTCATCACCGGAAGTACGAGTGCGGATTAGTTTTATGCTGTCCAAAATGCAACAAACAGTTCAAGCAAAGAGATTCCATGTTCAAGCATATCACCAATACTCGTTGCAAAGCCTCACGGTGTCCTGTGTATCGATTGCAGTTTTCTTGGAATGTGGCTCGTCAACTAACAGCCGAAGAGGATCTATGCCGTGCCCATTGCCCCGATTGTCCTAAGAGTTATAAGAATAGAAATCACTTGCTGAGGCACATGAAGTATGAGTGTGGAAAAGAACCTCAGTTTCAGTGTCCGTATTGCAATCATCGGACAAAACACAAAGAGAATTTAAAAGCCCATGTTCTAGAGATATTCTTATTGGCCAGAGATTTCATTGTCCCTGTTGCCAGCGTAGTTATCGCCATCATCGTGACCTCAAGAGACACCTCTTGTACGAGTGCGGTGTGGCTCCACGTTTCACCTAACGCTTGTCTGCCGTCACTCTCGTCGTTTGACAACCATGGCTTGTTTTATGGCTTCGGCTTCCAATGCGGTAAGTGCAGTAAAGTCTACAAGGAGAAGAAAACGTTGAACCGTCACGTCAACTACGAGTGTCAGAAGGAGCCGCAATTCCAGTGTCCTCTGTGTCCTCATCGGGCCAAGCAGAAGGCAGCGATGAAAAAACATCTGATAAGACATTCTAATCTTGACAAAATGGTGAACCAATGA
- Protein Sequence
- MLFDKSYPTSTAIFHLFEIRSIAFPIETTNYRELNQVAVWIQPIAVRALETLTYDASGFHCDRCGKRFKNKRSLVLHVTNVCGFPKKSFTCPSCFKSYSRKTDLSAHIKHACVAAPTQPDSVCTSESLKDPSRFYCARCTKNYSSKRSLVIHISHMCGIPKKSFVCPTCFKRFSSKSTLMTHINHDCAPVWANPITVRALDSLKYDTSHFHCDRCSKSFKTKRGLVLHVSIVCGVPKQSFICPACDKCFTRDKCLMAHLRHECGKSLQCHICKKTTFTTRSGLITHIKSGCDRQLFRCVNCPKEFHRQVAVWTPPDCIRELESLGDPSRYHCDRCDKIFETKRDLVCHVTLMCGVPKQCFICPSCNKCYSQKNHLASHIRHECGKCLQCNACKKTFMTKTGLDTHVKSACDKQSLECSKCAKEFHRQATLTYHKKHECVGVWAQRIAVRKVESLTESSRFNCERCGKSYKNKQSLTIHVSTECGATKKSYRCPTCDKCYSREKHLMGHIKHECDDPLEFLFVATSPAPVTSVVQMPPLVFPCVPCGRSYKRKSDLNRHKKFECGKPATFCCIFCPYRVAEMWRETTWSDTTQLTQGERPRYQCTMCSKSYKQKFHLTRHMRIECNKEPRFQCQYCSYITKYNGSLQTHVRNKHRDMVLVRVGARPTQEAVNFSNVLFASRGISLWRAWFDMSSGGHSMHMFITSVANRQTPSVRFHCPNCKKSYTQKKKLTYHMKHECGKDLRCPYCNKQFLYGTMPIEFVSVYDPLEMNRFRCAGCSSSFKEKRKLTYHMNHECGKDLHSMRFSLSSETQSFQCPTCDMCYKKKWRLTYHIKHECGWSHSLPYVHGSVVSQQKISQRFQCISCNKSYNAERNMTYHQKHECGKVLRCPTCSKQFKYKSHLFTHINHDCGKELRCPTYLPDLLPILIGSVVSLQSPSQRFQCMKCVASYKVESRLSHHRKYECGLVLCCPKCNKQFKQRDSMFKHITNTRCKASRCPVYRLQFSWNVARQLTAEEDLCRAHCPDCPKSYKNRNHLLRHMKYECGKEPQFQCPYCNHRTKHKENLKAHVLEIFLLARDFIVPVASVVIAIIVTSRDTSCTSAVWLHVSPNACLPSLSSFDNHGLFYGFGFQCGKCSKVYKEKKTLNRHVNYECQKEPQFQCPLCPHRAKQKAAMKKHLIRHSNLDKMVNQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -