Bris024094.1
Basic Information
- Insect
- Brachyptera risi
- Gene Symbol
- -
- Assembly
- GCA_964007535.1
- Location
- OZ023333.1:10433735-10477650[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 32 0.00033 0.029 15.9 3.3 3 21 102 120 100 121 0.94 2 32 0.31 27 6.5 4.0 3 21 129 147 127 148 0.93 3 32 0.0069 0.61 11.7 1.2 1 21 171 191 171 192 0.94 4 32 0.0014 0.12 13.9 1.2 2 20 199 217 198 219 0.92 5 32 0.00021 0.018 16.5 2.8 1 21 225 245 218 246 0.97 6 32 0.00039 0.035 15.7 1.4 2 21 253 272 252 273 0.92 7 32 3e-07 2.6e-05 25.5 0.5 2 22 300 320 299 320 0.94 8 32 0.04 3.5 9.3 0.6 2 21 327 346 326 347 0.93 9 32 2.2e-06 0.00019 22.8 0.8 2 21 392 411 391 412 0.95 10 32 0.033 2.9 9.6 0.8 2 21 419 438 418 439 0.93 11 32 5.5 4.9e+02 2.6 3.2 1 21 467 487 467 488 0.85 12 32 0.0021 0.19 13.4 0.3 2 21 495 514 494 515 0.93 13 32 0.00033 0.029 15.9 0.4 2 21 564 583 563 584 0.93 14 32 0.057 5 8.8 1.5 1 21 605 625 605 626 0.96 15 32 0.00015 0.013 17.0 4.6 2 20 633 651 632 653 0.93 16 32 0.45 40 6.0 4.9 1 21 687 707 687 708 0.94 17 32 0.0018 0.16 13.6 3.6 2 21 715 734 714 740 0.95 18 32 0.024 2.1 10.0 2.9 1 21 768 788 768 789 0.91 19 32 0.011 0.97 11.1 2.3 2 21 796 815 795 816 0.94 20 32 0.00039 0.034 15.7 0.9 1 21 836 856 836 857 0.97 21 32 0.012 1.1 11.0 0.6 3 16 865 878 863 880 0.90 22 32 0.24 21 6.9 6.0 2 21 902 921 901 922 0.94 23 32 9.1 8.1e+02 1.9 7.7 2 20 929 947 928 949 0.88 24 32 0.14 12 7.6 4.1 1 21 973 993 973 994 0.94 25 32 0.00081 0.072 14.7 3.1 2 21 1001 1020 1000 1021 0.94 26 32 0.87 77 5.1 0.1 1 20 1046 1065 1046 1067 0.95 27 32 0.72 64 5.4 0.1 2 11 1093 1102 1092 1104 0.91 28 32 6.8e-05 0.006 18.0 1.1 1 21 1119 1139 1119 1140 0.95 29 32 0.0014 0.13 13.9 0.7 1 21 1160 1180 1160 1185 0.95 30 32 0.0086 0.76 11.4 5.3 1 21 1215 1235 1215 1236 0.93 31 32 0.009 0.8 11.4 4.5 2 21 1243 1262 1242 1263 0.93 32 32 5e-06 0.00045 21.6 4.7 2 23 1270 1291 1269 1291 0.97
Sequence Information
- Coding Sequence
- ATGATCTGGTTCCGTGTCTCAAACACGAGGGCTTCAGCTATCATGAAACATCTTGGTGATCTAGAAACTGAGTACGGAGAAGAGGGCTTGCTAGAGATTGTGGAATGTAAAGAAAAGTGGGGAGACCAAGAGATCCAGCGGACTACAGTCTTGGTGAGTGTAGTGGAAAGAGAAGTGAGTCAAGACGAAGTAGAAACCGAAGTGTGGTGGAGGAACGAGAGAAATGGAAAGAACGGTTTCGTGGAGTGGAAGCATCCTGTGTTCGGCTCGCTGATTGGTCTGAAACATCCCGAACGTGTTCACTGTCCGAACTGCGATAAGAGCTTTAAATATCGTAAACATCTTGTGACGCATATAAAACACGAATGCGGACAAGTGTTATTGTGTCGGTCGTGTAATAAGAGGTTTAATTACAAGTGTGATCTGAGTCGTCATGTAAATCATGAGTGTGATTTTAATGATACCGAATCTCTCTTAACCAATCTAATTGTTACACCAACTGTCGGCCGCTTCTTCTGCACAAAATGTCCGAAAAGCTTCAAGCTCAAACAAGACATCTTACGGCACGTGCGTTACGAGTGTGGAAAAGTTTTGAACTGTCCGAAATGTAACAAGACTTTCAAGTATAAAGGCCACTTCGATGTTCACGTGAACGATGAATGTGGCAAAAGTTTCGTCTGCACgaattgtgataaggttttcaacAAGAAAGCCTACTTCAACAGACACATCAATCATGAATGTGGTCAGAACCTGTCATGTCCAGTATGTGATAAGAGTTTCAAGCAAAAATCGAACCGCGACCAGCACTTGAAGCACGAGTGTGCGTGTAATCGACATTTCTTGAACAAGTATCTACTCTTTTACCACTTGAGACATGAGTGCGGCGTTGAGCTTCGTTGCCCGACTTGTGGGAAAGTCTTCACGCAGAAATCCAACCTTTCCACGCACATGAATCGCGAGTGTGGTAAAGAGCTGCGCTGCGTGAAGTGCTTGAAGACGTTCAATCGGATTGGCACTCTCAATTATCATTTGAAAAGAGGTTGCAAGGAAGAGAAGCCGGATAAGGTGCCGATCCTTCACAATTCGCGAACTCTGCGGAGTGAACACTTCAGCACTGAGTACCTTCAAGTGATTCTGGAAACGCCGTCGCCTCCTTCTAAATGCGAGCTTCGTTGTCCAACATGCCCGAAGGTCTTCACGCAGAAATCCAACCTTTCCACGCACATGAATCACGAGTGTGGTAAAGAGCTGCGCTGCTTGAAGTGCTTGAAGACGTTCAATCGGATCGGCAGTCTCAATTACCATTTAAAGAAAGGTTGCAAGGAAGAGAAGCCAAATCCTgATGTATACGATGTGAACATTCATATGAGTTTTGACCCGACGTGTGTGAGACCGTTCCAGTGTCGTCAGTGCAACAGGTTGTTTAGTGATAAACCCGAGTGCTTGTATCACCTGAGACATGAGTGTGGCAGGATACTTCGGTGTCCGAACTGTGAGAAAACGTTCAACGGGAAACGTTATCTTATATCGCATGTGAAGTATGAGTGTGATGTGAACTATTTGAACAGTAGAATAAAGGCAGATCCGACGTGTGCGAAACCGTTCCAGTGTCTCCAGTGCGACAGGTTGTTCAGTTGTAGACCCGAGTGCTTGTATCACCTGAGACATGAATGTGGCAGAATACTTCGGTGTCCAAACTGTGAGAAAACATTCAACGGGAAACGCAATCTCACGACACACGTCAACTATGAGTGTGattttatgaaaatggtctaccCTACTAATGCTATTCAAGGCATGCCTCACCGCTATCGGTGTTCGAAATGTGATACGAGTTACGCTGTGGAAAGCGATTGCACCTCTCACATGAGATACGAATGCGGAAAACAACTCAGCTGTCCCGAATGCAACAAGTGTTTCAGTCACCAGAGCAATCTCAGCGTTCACGTGCATCACGAATGTGGTCGAGTCCTGTTGTGTCGATCATGTGGGATCGTAGAAATGTTCCTTCCCGAGCTCAGCATGAACAGTTCGTTTCAAGGCGTCCCTCATCGCTATCAATGTCCCACGTGCTCCAAGTGCTATCGTCTCAAGGGCGACTGCACGGCGCACATCAAACACGAGTGTGGCAAAGATCTCGTCTGCCCGAACTGTTCGAAACGATTCAAGCAGCGATGTAACTTGAGCACACACATCAATCACGAATGTGGTAAAGTGTTGTCTTGTCCGAAATGTGGTGCTTCACATTGGTTTCCCGGCTACCGTCCTGTTGACACCGGCCCAATCACGTCTCGTCGCTTCCAATGTCAGGACTGCAATACGATCTTTCGGTCCAAGCACCTACTGACGTTCCACAGGAAGCGCGAGTGCGGGATTGAACTACGCTGTCCCACTTGCAATAAACTGTTCAAGCATTATACGAATATGATAACGCACATCAAACATGATTGTGTTCCTGCGGTCTTCAAATACTTGAGACGCCCTCAGAGAAAGCCAACTAGTTTTCAGTGTCCAAGTTGTTTCAAGAAGTTCAAGGCGAAGTCGACTCTCATGACTCATATCCGATACGAGTGCGGCAAGTGTCTATTCTGTCCAACTTGTGGCAAGAGCTTCAAGTTCAGATCCACTTTATATGCGTCTCAGTGGGTACTTTCTGTTACAAGCCTACGAGAATTGAAGACGGCTACAAAAACGTGCTGTTATTGTCCGCATTGTATGACGAGTTTCAAAACGAAACGTCAGCTAAGTTATCATATCAAACACGAGTGCAGCAGAAATCTTTGCTGTCCAAAGTGTTGTAAACGTTTCACGACCAAGTCCCAATTAACGTGCCATGTGAACAACGAGTGTGATACCGTTGCGTGGTCTCTTCCACTAATAAGTAGAACCACGCTTTTCGGCGACTTGTCGCGCCATCACTGTCCTTCCTGCCAGCGCAGCTACAAGGATAAGAATAACATGCTCTACCACATAAAACACGAGTGTGGTCAGGACCTCAGATGTCTGACTTGTAACAAGCAGTTCCAGAGGAAATCACACCTGAAAACGCATATCAAATACGAGTGTGTTTTAAAATACAGTCCGCCTCCAACAATGATCTCTACCGAGAGAGTCCGCTTATCGTCACTACGTTTTCCATGTCCGAATTGTGCTGCCAACTACGGCACTCCGGGGGACCGTAGACGTCACATGACGCACGAGTGTGCGCCGATGTCGCCGATGTCGCCGATGTTCAGGCCGGTTATCAAAGTCAAGGATCCCTCAACTCGGCTTCGGTGCCCCAACTGCAATCGCACTTTTAGCGCCGAACCGGCGAGAAAGTTCCATCTGAAGCATGAGTGTGGAAAACGGTTCCAGTGCACCTCGTGCAAGAAGAGTTACAAGACAAAAGGCAATCTCACAGCACATGTTAACCATGAGTATTCTGCGTTTTGGACTCATGATTTCAACAGTTCACAGAAAGCATCGTCTTGCTTTCAGTGTCCAAACTGCGATAAGACCTACAAGCTGAAAGCGAAATGGACAACCCATGTGAGGGCTCTGAGTCGTCATTTGGCAAGAAGTTTGGGTTTACTCTCACCCCTCGAGAAGGCCATCATTTCGAGACGACACCTCACGAATCATGGCTATTTCAAGCCTCATTGCTGTCCGATGTGCGGCAAGCGCTATCAGAACAAGAAGCATTTCACCGCGCACGTCAAGTACGAGTGTGGAAAAGAGCTGCGCTGTGTGACTTGCGGCAAGCAGTTCACGCGCAAGTGCCATCTCGTCACGCACGTCAAACACGAGTGTGGCGTGGACTTGTCGTGTCCGCATTGCAGGAAACGTTACACGTTCAAATCAGATCTCACTCGTCATATGAAAACACATTTCATTACAGTCTAA
- Protein Sequence
- MIWFRVSNTRASAIMKHLGDLETEYGEEGLLEIVECKEKWGDQEIQRTTVLVSVVEREVSQDEVETEVWWRNERNGKNGFVEWKHPVFGSLIGLKHPERVHCPNCDKSFKYRKHLVTHIKHECGQVLLCRSCNKRFNYKCDLSRHVNHECDFNDTESLLTNLIVTPTVGRFFCTKCPKSFKLKQDILRHVRYECGKVLNCPKCNKTFKYKGHFDVHVNDECGKSFVCTNCDKVFNKKAYFNRHINHECGQNLSCPVCDKSFKQKSNRDQHLKHECACNRHFLNKYLLFYHLRHECGVELRCPTCGKVFTQKSNLSTHMNRECGKELRCVKCLKTFNRIGTLNYHLKRGCKEEKPDKVPILHNSRTLRSEHFSTEYLQVILETPSPPSKCELRCPTCPKVFTQKSNLSTHMNHECGKELRCLKCLKTFNRIGSLNYHLKKGCKEEKPNPDVYDVNIHMSFDPTCVRPFQCRQCNRLFSDKPECLYHLRHECGRILRCPNCEKTFNGKRYLISHVKYECDVNYLNSRIKADPTCAKPFQCLQCDRLFSCRPECLYHLRHECGRILRCPNCEKTFNGKRNLTTHVNYECDFMKMVYPTNAIQGMPHRYRCSKCDTSYAVESDCTSHMRYECGKQLSCPECNKCFSHQSNLSVHVHHECGRVLLCRSCGIVEMFLPELSMNSSFQGVPHRYQCPTCSKCYRLKGDCTAHIKHECGKDLVCPNCSKRFKQRCNLSTHINHECGKVLSCPKCGASHWFPGYRPVDTGPITSRRFQCQDCNTIFRSKHLLTFHRKRECGIELRCPTCNKLFKHYTNMITHIKHDCVPAVFKYLRRPQRKPTSFQCPSCFKKFKAKSTLMTHIRYECGKCLFCPTCGKSFKFRSTLYASQWVLSVTSLRELKTATKTCCYCPHCMTSFKTKRQLSYHIKHECSRNLCCPKCCKRFTTKSQLTCHVNNECDTVAWSLPLISRTTLFGDLSRHHCPSCQRSYKDKNNMLYHIKHECGQDLRCLTCNKQFQRKSHLKTHIKYECVLKYSPPPTMISTERVRLSSLRFPCPNCAANYGTPGDRRRHMTHECAPMSPMSPMFRPVIKVKDPSTRLRCPNCNRTFSAEPARKFHLKHECGKRFQCTSCKKSYKTKGNLTAHVNHEYSAFWTHDFNSSQKASSCFQCPNCDKTYKLKAKWTTHVRALSRHLARSLGLLSPLEKAIISRRHLTNHGYFKPHCCPMCGKRYQNKKHFTAHVKYECGKELRCVTCGKQFTRKCHLVTHVKHECGVDLSCPHCRKRYTFKSDLTRHMKTHFITV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -