Basic Information

Insect: Brachyptera risi
Gene Symbol: -
Assembly: GCA_964007535.1
Location: OZ023333.1:10477876-10499857[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 27 6.9e-05 0.0061 18.0 2.5 2 21 18 37 17 38 0.94

2 27 0.53 47 5.8 0.3 2 12 45 55 44 58 0.84

3 27 0.0064 0.57 11.8 2.5 1 20 79 98 79 100 0.93

4 27 0.0065 0.58 11.8 1.4 2 21 108 127 107 128 0.92

5 27 0.0036 0.31 12.6 4.3 2 21 135 154 134 155 0.94

6 27 0.0012 0.11 14.1 0.5 2 21 162 181 161 182 0.93

7 27 0.0018 0.16 13.6 2.5 1 21 209 229 209 230 0.94

8 27 0.0021 0.18 13.4 0.9 3 16 238 251 236 253 0.92

9 27 0.54 48 5.8 1.8 3 21 404 422 403 423 0.93

10 27 0.29 25 6.6 0.2 1 11 431 441 431 445 0.92

11 27 0.00088 0.078 14.5 6.2 1 21 507 527 507 528 0.94

12 27 0.00081 0.071 14.7 4.8 2 21 535 554 534 555 0.95

13 27 0.013 1.1 10.9 5.8 3 21 563 581 561 582 0.93

14 27 0.00018 0.016 16.7 0.5 2 20 589 607 588 608 0.95

15 27 0.002 0.18 13.4 1.0 1 21 612 632 612 633 0.96

16 27 0.00035 0.031 15.8 1.0 2 21 640 659 639 660 0.93

17 27 0.00058 0.051 15.1 1.7 2 21 667 686 666 687 0.94

18 27 1.3 1.1e+02 4.6 0.3 3 13 695 705 695 709 0.88

19 27 0.14 12 7.6 3.9 1 21 725 745 725 746 0.95

20 27 0.00028 0.025 16.1 2.1 2 21 753 772 752 773 0.93

21 27 0.0014 0.12 13.9 0.3 2 21 780 799 779 800 0.93

22 27 0.0017 0.15 13.7 1.0 2 22 807 827 806 827 0.95

23 27 0.00029 0.025 16.1 2.2 1 21 850 870 850 871 0.93

24 27 0.0044 0.39 12.3 2.4 2 21 878 897 877 898 0.95

25 27 0.00022 0.02 16.4 0.9 2 21 905 924 904 925 0.94

26 27 2.9e-05 0.0025 19.2 2.0 2 21 932 951 931 952 0.94

27 27 8e-05 0.0071 17.8 1.5 2 21 959 978 958 979 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	27	6.9e-05	0.0061	18.0	2.5	2	21	18	37	17	38	0.94
2	27	0.53	47	5.8	0.3	2	12	45	55	44	58	0.84
3	27	0.0064	0.57	11.8	2.5	1	20	79	98	79	100	0.93
4	27	0.0065	0.58	11.8	1.4	2	21	108	127	107	128	0.92
5	27	0.0036	0.31	12.6	4.3	2	21	135	154	134	155	0.94
6	27	0.0012	0.11	14.1	0.5	2	21	162	181	161	182	0.93
7	27	0.0018	0.16	13.6	2.5	1	21	209	229	209	230	0.94
8	27	0.0021	0.18	13.4	0.9	3	16	238	251	236	253	0.92
9	27	0.54	48	5.8	1.8	3	21	404	422	403	423	0.93
10	27	0.29	25	6.6	0.2	1	11	431	441	431	445	0.92
11	27	0.00088	0.078	14.5	6.2	1	21	507	527	507	528	0.94
12	27	0.00081	0.071	14.7	4.8	2	21	535	554	534	555	0.95
13	27	0.013	1.1	10.9	5.8	3	21	563	581	561	582	0.93
14	27	0.00018	0.016	16.7	0.5	2	20	589	607	588	608	0.95
15	27	0.002	0.18	13.4	1.0	1	21	612	632	612	633	0.96
16	27	0.00035	0.031	15.8	1.0	2	21	640	659	639	660	0.93
17	27	0.00058	0.051	15.1	1.7	2	21	667	686	666	687	0.94
18	27	1.3	1.1e+02	4.6	0.3	3	13	695	705	695	709	0.88
19	27	0.14	12	7.6	3.9	1	21	725	745	725	746	0.95
20	27	0.00028	0.025	16.1	2.1	2	21	753	772	752	773	0.93
21	27	0.0014	0.12	13.9	0.3	2	21	780	799	779	800	0.93
22	27	0.0017	0.15	13.7	1.0	2	22	807	827	806	827	0.95
23	27	0.00029	0.025	16.1	2.2	1	21	850	870	850	871	0.93
24	27	0.0044	0.39	12.3	2.4	2	21	878	897	877	898	0.95
25	27	0.00022	0.02	16.4	0.9	2	21	905	924	904	925	0.94
26	27	2.9e-05	0.0025	19.2	2.0	2	21	932	951	931	952	0.94
27	27	8e-05	0.0071	17.8	1.5	2	21	959	978	958	979	0.95

Sequence Information

Coding Sequence: ATGCCTCGCCATCTGAAAGATCACGTGTACTACGAATGTGGTCAAGTGTTACGTTGTCCGAGTTGTAACAAGCAGTTCAAGCACAAACGTAACTTGACGTCTCACATGAACTATGAGTGTGGTCAAGAGTTGCGTTGTCCCAAGTGTAACAAACAGTTCAATGGAAGAGATGAGGCGGACCCACTATCTATTGCAACCAGCTCGCTTGTCAGCCTCCAGAATACAAGCAAACGCTTTCACTGCACCACCTGTGACAAGAGGTTCAGGTTAAAACGTAATCTTGTCCTTCACAAAACGTCGACTAGATGTGGCCTTGAATTGGTCTGTCCAAAATGTGAAATTACATTCAAACAAAGGAACCATTTTCATGATCACGTGAATTACGAGTGTGGAAAAGAGCTTCGTTGTTCAACGTGCAAGAAACTGTTCAAACATAAACGCAATCTCACTTCGCACATTAATCATGACTGTGGTAATGAACTGATTTGTCCCTCGTGCAAGAAACAGTTCAAACAGAAAAACACTCTTGCTTCTCACATCAAATACGACTGTGGTGACGTGATGAAGTTGACCCTGCCCGCTAGTAGTTATTGTCAAGTCAGCTTCGTGGAGCCGTCTCAGCGATTTCATTGCCCAACGTGCGACAAGAGCTACAAGCTGAAGAGGAACCTGGCCATCCACACGAAACACGAGTGTGGCAAAGAGCTCTTTTGCCCCACGTGTGGCAAGAGTTTCAAGACGAAAAGACATTTAGACACGGGTCTGGTAGAATATTCAGCTCCTCGAATGCTAGTCTACAGAGCCTCTAAAATGATGTCCCAGACCTGGCTAGCTCTAAAGAACTTTGATCGGAGTATGTGTCTACTTCCAGGTGACTGTCGCATCAGGTATTACGCCGTCGGCTCGGACAGTCTTGACGTGACAATGCAGCGCTATCGGTGTGAAACATGCGGGCCAAGCCCCGACGAAGCTGTTCCTCAATTCACTCGAATTTATCTTCCTGAATCACCGTACGAGCCGCTGGGACATATTCTGCAGACCAAACGCATACCCGGCTGTCTTTCCACGTCTCGCTCACGTGAGACGCCATACGCGAGGCTGAGAACCACGCGTGTTCTGGAATCATTATCACACCGCGTGTCGACGAAATCAGGAAGACGAGGTCGACGTCGATCATTCCGTCATCCCGGAGTTTTGAAAGTGGCTGCATGTGCCTCTTGTAAGAAGCAGTATTCGTGTAATAGTTCACTAAACAGACACATCAAATACGAGTGCAATGTCGCGCCTCAGTTCCAGTGCCCACACTGTCCGCTTCGCTTCAAACTGGCAAGACGTTATTGGAGTCGCACCAAAGACCCGCTTGCCGGAAAACCGGATCGAGAAATGTTCCACTGTTTAGCGTGTGATAAGAAGTATTCGTGTAAAGGACCGTTGACGCGGCACTTGACATACGAGTGTGGTTCTATGAGTCGGTTTCATAGAATGAACCAAATAGCAAGCCTTCAGTTCGGAGGTCGTTTTTTCTGCTGTTTCTGTAATAAGAGCTTCAAGCGTAAAGGCCACTTGACGTCACACATTAACTACGATTGTGGGAAACAACTCAAATGTCCAACGTGCTTCAAGTGCTTCAAACAAACGTGCAATTTGAACGCACACATTCGATATGAGTGTGGGAAGCGAATATGTTGTCAGAATTGCGGTAAACATTTTGCAAACAGACGAAGTTTGTGTACACATTTGAAATATGAGTGTGGAAAAGATATGAAGTGTCCAAAATGCAACAAGACATTCGCCAACATGATGTCATTAAAACGACATCGAGATCCGAACCGTTTCTACTGTCCTAATTGTCCGAGCAACTTCTCCAACGAGCGGCTTCTTACATCTCACATGAAACACGAGTGTGGTAAAGATCTACGTTGTCCGATGTGCAACAAGTTCTTTGGTAACAAAGCAAACCTCATCACGCACAAAAAACACGAGTGCGGGAAAATACTGTCGTGTTCGAACTGCAACAAATCGTTCAAGTACTATCACGACATGCGCCGGCACATCCAAGAGGAATGTGGCAAGGTACTCGGTTGTCCCACATGTAGCAAGACGTTCAATCATTTGGAATACATTCATTCTTCCTTCATGATGTCGGCTCAGTTGTTTCGAGACGCGGTGCAATACAACTGCACGAACTGCATGAACAGTTTCAAGTACAAGCACGAGCTAATGCACCACATGAGTCGAGACTGTCGCAAGAAGTGGAGTTGTCCTACATGCCAGAAGACGTTCGCTCGTAAGACTCACTTGTCCACGCACGTGAAGCATGAGTGTGGTCAAGATCTGAGCTGCTCCACTTGCGGGAAAATATTCGTCTTCAGGGCCGATCTCGTTCGACATGTCAAACATGAATGTGGGAAGAATTTGTCGTGTCCTTACTGCAATAAACACATCACTACCTACACGTCGCTGTTGACACATATGAAAACTGTGTGTCCACCAGATTATTGTCAACTGATCAACAAGTATGTGCGAACCAATCGTTATTCCGGTCCTTTTCTATGTCCTAAATGTAACAAGAGTTTCAAACAGAAACCTCGACTCAACTCGCACTTGAGACACGATTGTGGCAAAGATCTACGCTGTACAACGTGCAACAAAATCTTCAAACTGAGACATTACTTATTGACTCACATGAAGTTCGAATGTGGCAAGCGGTTGAGTTGCCCGTCGTGCTCCAAGGTATTCTACCAGCAGACCAATCTGAACTCGCACATCAAGCATGAGTGTGGTAGGGAGCTGCGTTGTCCGACGTGTGGGAAGAACTTCACGCATAAGAGAACTCTCAACACTCACATCAAACACGAGTGCGGTAAAACCTTGCAGTGCCCCAGATGCGGCAAGTGCTATGTCACGCACAATCAGCTAGTCAAACACATGAAAGCGGTGTGTGCTACTATCGAGGTCATCATACCGTGA
Protein Sequence: MPRHLKDHVYYECGQVLRCPSCNKQFKHKRNLTSHMNYECGQELRCPKCNKQFNGRDEADPLSIATSSLVSLQNTSKRFHCTTCDKRFRLKRNLVLHKTSTRCGLELVCPKCEITFKQRNHFHDHVNYECGKELRCSTCKKLFKHKRNLTSHINHDCGNELICPSCKKQFKQKNTLASHIKYDCGDVMKLTLPASSYCQVSFVEPSQRFHCPTCDKSYKLKRNLAIHTKHECGKELFCPTCGKSFKTKRHLDTGLVEYSAPRMLVYRASKMMSQTWLALKNFDRSMCLLPGDCRIRYYAVGSDSLDVTMQRYRCETCGPSPDEAVPQFTRIYLPESPYEPLGHILQTKRIPGCLSTSRSRETPYARLRTTRVLESLSHRVSTKSGRRGRRRSFRHPGVLKVAACASCKKQYSCNSSLNRHIKYECNVAPQFQCPHCPLRFKLARRYWSRTKDPLAGKPDREMFHCLACDKKYSCKGPLTRHLTYECGSMSRFHRMNQIASLQFGGRFFCCFCNKSFKRKGHLTSHINYDCGKQLKCPTCFKCFKQTCNLNAHIRYECGKRICCQNCGKHFANRRSLCTHLKYECGKDMKCPKCNKTFANMMSLKRHRDPNRFYCPNCPSNFSNERLLTSHMKHECGKDLRCPMCNKFFGNKANLITHKKHECGKILSCSNCNKSFKYYHDMRRHIQEECGKVLGCPTCSKTFNHLEYIHSSFMMSAQLFRDAVQYNCTNCMNSFKYKHELMHHMSRDCRKKWSCPTCQKTFARKTHLSTHVKHECGQDLSCSTCGKIFVFRADLVRHVKHECGKNLSCPYCNKHITTYTSLLTHMKTVCPPDYCQLINKYVRTNRYSGPFLCPKCNKSFKQKPRLNSHLRHDCGKDLRCTTCNKIFKLRHYLLTHMKFECGKRLSCPSCSKVFYQQTNLNSHIKHECGRELRCPTCGKNFTHKRTLNTHIKHECGKTLQCPRCGKCYVTHNQLVKHMKAVCATIEVIIP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -