Bris034233.1
Basic Information
- Insect
- Brachyptera risi
- Gene Symbol
- -
- Assembly
- GCA_964007535.1
- Location
- OZ023338.1:19892-29002[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 1.4e-07 1.2e-05 26.5 1.5 2 23 172 193 171 193 0.97 2 20 0.0013 0.11 14.0 0.6 1 23 199 221 199 221 0.97 3 20 0.00032 0.029 15.9 0.7 1 23 227 252 227 252 0.95 4 20 0.00012 0.01 17.3 0.1 1 23 258 280 258 280 0.97 5 20 0.00025 0.022 16.2 3.2 1 23 285 307 285 307 0.98 6 20 0.018 1.6 10.4 1.1 1 23 313 336 313 336 0.97 7 20 0.018 1.6 10.4 1.1 1 23 384 407 384 407 0.97 8 20 0.018 1.6 10.4 1.1 1 23 455 478 455 478 0.97 9 20 0.071 6.3 8.5 0.8 1 23 526 549 526 549 0.94 10 20 0.00058 0.052 15.1 4.5 1 23 555 577 555 577 0.98 11 20 0.0028 0.25 13.0 0.3 1 23 583 607 583 607 0.98 12 20 0.00019 0.017 16.6 0.1 1 23 613 635 613 635 0.97 13 20 0.068 6 8.6 0.4 1 23 641 663 641 663 0.97 14 20 0.0014 0.13 13.9 3.1 2 23 670 691 669 691 0.97 15 20 0.00026 0.023 16.2 6.1 1 23 697 719 697 720 0.95 16 20 5.6e-06 0.0005 21.5 0.8 2 23 745 766 744 766 0.97 17 20 5.4e-05 0.0048 18.3 1.4 1 23 772 796 772 796 0.98 18 20 1.2e-06 0.0001 23.6 1.9 1 23 802 824 802 824 0.99 19 20 2.2e-06 0.0002 22.7 4.2 1 23 830 852 830 852 0.98 20 20 5.8e-05 0.0051 18.3 4.8 1 23 858 880 858 880 0.98
Sequence Information
- Coding Sequence
- ATGGCTGGAGTAACTCTGGCAGCGGAGCCATCCGCGGAATTTGACCctcttcaaaatgttgaatgcGAATATCAACCTACAACAACTGGCGAGAGTAGTACATTTGAATACGTACCCATTAAAGTGGAACCGGATTTTTCAACTCTGGACGACAATGACGATATTCCTTTCAAAGAAACAGACGATTACGAAAGTCCAAATGTGAAACGTGAAATGACCGACGACGACGCAGGTTCCGATCAAGACGTAATAGTGTCGAACGAAGACCCACTCTTCGAACCTATCCCACCCGAAACATGTTTAAAATTGAGTAAATACAATATTCCTCTGTCCACGTCTATTGTGAAAGTTTCCAATCAGTATAGCATAAACCACAAGAATGAGTGCGCGAAGCCGCGGACAATGAGCCGCCGCCACCTCCAGAGAGCGGCGGCGTTGAAACAGCATGCGTCGGACGAGTCTGACAGCGAGGAACAGCTGTCTGACGACTCGCGCACGCATGCCCCGCCGCTCCAGTGCCCCCAGTGCAACAAGTCGTTCTCGCGAGAGTACTCCCTCAAGACCCACATGAGGCTGCACGAGGGACAAGCTCTCTACCAGTGCAACATCTGTGACAAGCGGTTCAACATCCTCAGCATCCTCAAGATACACGTCAAGCAGCACGCAAGCCGCAAGTTCTTCAGATGCCATGCGGGTGATTGCGAGAAGAAGTTCACGTCTGCCGGCGGCCTGAAGTACCACACGAAGGCGGCACACAGCATGCTGCGTCCGTACCGCTGTCAGGCGTGCCCCAAGAGCTTCGTGGACGCCAGCGGCCTGAGCAAGCATGCGTCCGTGCACGCGGGCAAGGCCCACCAGTGCTCCGTCTGCAGCCGCTCGTACTCGAGAGAACGCTACCTCAAGCTGCACCTCAAGATCCACTACGGCCAGAAGCCTTTCCGCTGCGACCGCTGCGACATGACCTTCCTCTGGTCCGGGCAGCTCAAGAGACACATGATGAGCCGGCACACAGAAGCCTTTCCGCTGCGACCGCTGCGACATGACCTTCCTCTGGTCCGGGCAGCTCAAGAGGCACATGATGAGCCGGCACACAGGTCAGTCAAACAAACTTCAAACATTGCTTTATTGATCCACTACGGCCAGAAGCCTTTCCGCTGCGACCGCTGCGACATGACCTTCCTCTGGTCCGGGCAGCTCAAGAGGCACATGATGAGCCGGCACACAGAAGCCTTTCCGCTGCGACCGCTGCGACATGACCTTCCTCTGGTCCGGACAGCTCAAGAGGCACATGATGAGCCGGCACACGGGTCAGTCAAACAAACTTCAAACATTGCTTTATTGATCCACTACGGCCAGAAGCCTTTCCGCTGCGACCGCTGCGACATGACCTTCCTCTGGTCCGGGCAGCTCAAGAGGCACATGATGAGCCGGCACACAGAAGCCTTTCCGCTGCGACCGCTGCGACATGACCTTCCTCTGGTCCGGGCAGCTCAAGAGGCACATGATGAGCCGGCACACAGGTCAGTCAAACAAACTTCAAACATTGCTTTATTGATCCACTACGGCCAGAAGCCTTTCCGCTGCGACCGCTGCGACATGACCTTCCTCTGGTCCGGGCAGCTCAAGAGGCACATGGTGAGCCGGCACACAGGGGAGCGACCGTTCCCGTGCGATCGGTGCGACAAGTGCTTCATGACGCCCGCCTGCCTGAAGAGCCACCTGTTCACCCACTCCAACGAGAGGCCGTTCAAGTGTTCTGTCGCCGGCTGCAGCAAGACTTACACCACTGAGCCCATCCTCAAGAACCACATGAAGGTCCACTCAGGAATCCGTCCGTACGCCTGCCCGATCTGTGCCAAGACGTTCAACGTGGCGTCGTACATGAAGACCCACCTGGCCATGCACTCGAAGAAGAGGCCGTTCCAGTGCGACCAGTGCGAGGACTCGTTCATCACGGAGGGGAGGCTGAAGCTGCACACGCTGCAGCACAACGACGAGGTCACGCTCAAGTGTGAGTTCTGTCAGAAGTGTTTCCTGCGCACGGGGAACCTGCGCGCACACCTGCGGCTGCACTCGGGCGAGCGTCCCTTCCGCTGTCTGTTCTGCACCAAGGGCTTCACCACCAACGGTAACCTGAACAAGCATCTGCAACACCACCACATCGAGGCGCAGATATTGCGTCGCATCGAGCTAGGGGCCAATCCTGTGAACAAGGACAAGGACCGTTCGCTCAAATGTAACAGCTGTGAGAAGGCATTCACCACTCTCGGCAACCTGAAGAAGCACCTGCAGATCCACACAGGTGAACGACCCTTCAAGTGCGAGGTGTCGGGCTGTCACAAGAGCTTCATCGAGGCCAACAAGCTGAAGGTTCACCTGCGTACGCACTCGGGCGAGAGGCCCTACAAGTGCGACCAGTGCGAGAAGGACTTTACCAcgtcagcccacctcaagaatCACATCATGGTGCACACGGGGGAGCGACCGTTCCGCTGTCATCTCTGCGACAAGAAGTTCATCCAGGCGCGGTACCTCAAGAAGCACATGATGATGCACAACGGAGATCTGCCGTTCCAGTGCCACAACTGCGGCCGATGTTTCGTCGAGGCGTACCGGTTGCGTAAGCACATGACGGTCCACGAGGCACACGAGGCGGCGGCGCGCACCTAG
- Protein Sequence
- MAGVTLAAEPSAEFDPLQNVECEYQPTTTGESSTFEYVPIKVEPDFSTLDDNDDIPFKETDDYESPNVKREMTDDDAGSDQDVIVSNEDPLFEPIPPETCLKLSKYNIPLSTSIVKVSNQYSINHKNECAKPRTMSRRHLQRAAALKQHASDESDSEEQLSDDSRTHAPPLQCPQCNKSFSREYSLKTHMRLHEGQALYQCNICDKRFNILSILKIHVKQHASRKFFRCHAGDCEKKFTSAGGLKYHTKAAHSMLRPYRCQACPKSFVDASGLSKHASVHAGKAHQCSVCSRSYSRERYLKLHLKIHYGQKPFRCDRCDMTFLWSGQLKRHMMSRHTEAFPLRPLRHDLPLVRAAQEAHDEPAHRSVKQTSNIALLIHYGQKPFRCDRCDMTFLWSGQLKRHMMSRHTEAFPLRPLRHDLPLVRTAQEAHDEPAHGSVKQTSNIALLIHYGQKPFRCDRCDMTFLWSGQLKRHMMSRHTEAFPLRPLRHDLPLVRAAQEAHDEPAHRSVKQTSNIALLIHYGQKPFRCDRCDMTFLWSGQLKRHMVSRHTGERPFPCDRCDKCFMTPACLKSHLFTHSNERPFKCSVAGCSKTYTTEPILKNHMKVHSGIRPYACPICAKTFNVASYMKTHLAMHSKKRPFQCDQCEDSFITEGRLKLHTLQHNDEVTLKCEFCQKCFLRTGNLRAHLRLHSGERPFRCLFCTKGFTTNGNLNKHLQHHHIEAQILRRIELGANPVNKDKDRSLKCNSCEKAFTTLGNLKKHLQIHTGERPFKCEVSGCHKSFIEANKLKVHLRTHSGERPYKCDQCEKDFTTSAHLKNHIMVHTGERPFRCHLCDKKFIQARYLKKHMMMHNGDLPFQCHNCGRCFVEAYRLRKHMTVHEAHEAAART
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -