Bris011930.1
Basic Information
- Insect
- Brachyptera risi
- Gene Symbol
- zfh1
- Assembly
- GCA_964007535.1
- Location
- OZ023328.1:40890677-40900099[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 4.4e-06 0.00039 21.8 0.1 1 23 10 32 10 32 0.98 2 19 5.3e-06 0.00047 21.5 0.4 1 23 37 61 37 61 0.98 3 19 0.85 75 5.2 0.2 3 15 71 83 69 86 0.84 4 19 4.3 3.8e+02 2.9 0.6 3 14 153 166 152 170 0.78 5 19 0.0014 0.12 13.9 3.1 1 23 252 274 252 274 0.98 6 19 5.6e-06 0.00049 21.5 2.6 1 23 280 302 280 302 0.99 7 19 0.34 30 6.4 0.2 3 23 310 331 308 331 0.93 8 19 2.7e-06 0.00024 22.5 0.4 1 23 336 358 336 358 0.98 9 19 5.4e-06 0.00048 21.5 0.6 1 23 363 387 363 387 0.98 10 19 0.0014 0.12 13.9 2.9 3 23 397 418 395 418 0.95 11 19 0.00014 0.012 17.0 0.2 1 23 424 446 424 446 0.99 12 19 3.3e-05 0.0029 19.0 0.2 1 23 452 476 452 476 0.96 13 19 9.3e-08 8.2e-06 27.1 1.2 1 23 482 504 482 504 0.99 14 19 0.13 11 7.7 0.2 1 23 510 534 510 534 0.83 15 19 1.1e-05 0.001 20.5 0.8 1 23 539 563 539 563 0.97 16 19 0.00015 0.013 17.0 0.8 1 23 600 622 600 622 0.98 17 19 0.00016 0.014 16.9 0.6 1 23 628 652 628 652 0.98 18 19 4.5e-07 4e-05 24.9 3.6 1 23 658 680 658 680 0.99 19 19 6e-05 0.0053 18.2 0.6 1 23 686 709 686 709 0.97
Sequence Information
- Coding Sequence
- ATGGCAGTTCGTCATAGCAACAGGGAATACGTGTGTCATATTTGTGGTAAGAGCGTGGCGACTCCTATTATGTTGAAAGCTCATTTGGAAACACATGCTGGACGATTATTCAAGTGTACGGACGCTGGGTGTGATAAAGCATTCTATAATAAAGCCGGGTTACGTTCTCACCTGAAAACGCATGACCCAACTCGTGGACGCGCACATCTCTGTCATTTGTGTGGCATTAGCTACATTACTAAACATAGATTCGAAAACAACAAGGGAAGTAAAAGAAACTGCCAGTTATTTGGTCGCGTTCCAAATACCACTTTGTTAGACATAAAAGCAGATGAACTTACCAACACCAAATTAACAAAACACAACTCGGAAACATGTTTGGACGCATTGCCATCTCTAAAAATCGAACAAGTAGATGTGGCAGACCAGTATCCCCCGTCAATAAGTGAGCCAAGTTGCCAAGTTCATAGCTGTGATAAAACTTTCTACAATAAAGACTTCTATCTCACGCTCATGGGAACACAATATGCTAACCAACAGACGTTAGAAACAACTGAAGCTCATGAAAAACCTAAAGCTGTTGAGTCTGATGTATCATCTCATAAGTGTTCAATCAAGTCGTACGTTAATGTACATGAGCACACAGACGTTGAACCAGCTGCCCAACTGATGAGTGAAGAAAGGATTGACCGTATTGGAGATGATATTTCACTCACTTGTACTAGCCGTAAATCTTCAGTAACTGAGAAAAAGTACACATGCCCAGTGTGTAATATGATTTTTAATAAATGGAGAAATTTGAATTGTCATAAAAAGACGCACGCAAATGAACATAGATATAAATGTAGTGTGTGCGATCAAAGCTATAAACAAAGCAGAGATCTTAAGCGCCATGAAAAACGTCATCTGGGCATCAAAGATATGGCATGCACGGAGTGTGAATACAGAACATATAACATTTCTGTTCTCAAAGAACATATAATGTTTCGTCATAGAAGTAAAGAATTTATTTGCCAAGTATGTGGCAAGAGTCTAGCTACTCCTAAAAAATTGAAGAAGCATATGGAAACGCATGCTGAAAGAAAATTCAAGTGCACTGAAACGGGCTGTGATAAAGCGTTCTATAATAATGGAGGATTACGATCACACATGAAAAGCCATGACCCAACTCGTGTACATGCACATCTATGTCATTTATGTGGCTTGAGTTGTATAACTTCAGGAAAGTTGAATATTCATATGCAAATTGTGCACTTGAAAAAAGAGATGTATAAATGTGAAGTGTGCCTCAAGGTGGTATCGGCGCTCTCTTCGCTTAAAAATCATCAACGTATTCACACAGGAGAAAAACCATTCATTTGTGATGCTGCTAATTGCGATAAGGCTTTTAGTAgcaaaaaatatttaataatccATAAGCGAGTTCATTCTGGTGAACGAAAATACCAGTGTCTTGAATGTGATAAAAGCTTTACGCAGCAATCTACGCTGATTGTTCACCGAAGATCTCACACCGGTATAAAACCTTACGAGTGTGAACTTTGCCCCAAAGCATACAGTCTCTCCACTCCTACCGTGTTGAAGCAACATCTCGAAACTCATGCTGAGAGAACATTCAAGTGTGTTGAAGCAGGCTGTGATAAAGCATTCTGTAATAACGGAGGGCTACGTTCACATATGAAAAGCCATGACCCAACTCGTAAACGGGTACATCTGTGTCACTTATGTGGCTTTAGTTGTCTTGATAAACATAGGTTCAATATACACATGCAAATCGTACATTTGAAGAAAGAGATATATAAATGCGATGTATGTAAGAAAGCGATGTCCTCTCTTTCCTCACTCAAGAATCATCGCATGATTCACACGGGAGAAAAACCTTTCCGTTGCAATGCTCCTAATTGCGATAAGGCTTTCAGTGCGAGCAAATATTTAATCACTCATAAGCGAAGTCATACCGGAGAACGAAAGTACAAGTGCCTTGAATGTGATAAATGTTTTACGCAGCAATCTACGCTGATTGTTCACAGACGATCTCACACCGGAATAAAACCTTACGAGTGTGAATTTTGCCCCAAAGCATACGTGACAAAGACACTGCTCAATACTCATGTGAAGAGTCGACACTCGTGA
- Protein Sequence
- MAVRHSNREYVCHICGKSVATPIMLKAHLETHAGRLFKCTDAGCDKAFYNKAGLRSHLKTHDPTRGRAHLCHLCGISYITKHRFENNKGSKRNCQLFGRVPNTTLLDIKADELTNTKLTKHNSETCLDALPSLKIEQVDVADQYPPSISEPSCQVHSCDKTFYNKDFYLTLMGTQYANQQTLETTEAHEKPKAVESDVSSHKCSIKSYVNVHEHTDVEPAAQLMSEERIDRIGDDISLTCTSRKSSVTEKKYTCPVCNMIFNKWRNLNCHKKTHANEHRYKCSVCDQSYKQSRDLKRHEKRHLGIKDMACTECEYRTYNISVLKEHIMFRHRSKEFICQVCGKSLATPKKLKKHMETHAERKFKCTETGCDKAFYNNGGLRSHMKSHDPTRVHAHLCHLCGLSCITSGKLNIHMQIVHLKKEMYKCEVCLKVVSALSSLKNHQRIHTGEKPFICDAANCDKAFSSKKYLIIHKRVHSGERKYQCLECDKSFTQQSTLIVHRRSHTGIKPYECELCPKAYSLSTPTVLKQHLETHAERTFKCVEAGCDKAFCNNGGLRSHMKSHDPTRKRVHLCHLCGFSCLDKHRFNIHMQIVHLKKEIYKCDVCKKAMSSLSSLKNHRMIHTGEKPFRCNAPNCDKAFSASKYLITHKRSHTGERKYKCLECDKCFTQQSTLIVHRRSHTGIKPYECEFCPKAYVTKTLLNTHVKSRHS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -