Bris024053.1
Basic Information
- Insect
- Brachyptera risi
- Gene Symbol
- -
- Assembly
- GCA_964007535.1
- Location
- OZ023333.1:10029679-10085008[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 34 1.2 1.1e+02 4.6 2.6 1 12 74 85 74 88 0.90 2 34 0.017 1.5 10.5 0.8 1 21 103 123 103 124 0.94 3 34 1.1 1e+02 4.8 3.5 1 23 132 157 132 157 0.96 4 34 1.4e-05 0.0013 20.2 1.4 1 21 185 205 185 211 0.96 5 34 0.0031 0.28 12.8 0.4 3 21 214 232 212 233 0.93 6 34 0.012 1.1 10.9 1.4 2 21 242 261 241 262 0.94 7 34 0.0041 0.36 12.4 0.1 2 21 269 288 268 289 0.92 8 34 0.0041 0.36 12.5 0.4 2 21 300 319 299 320 0.93 9 34 0.00022 0.02 16.4 0.2 1 21 326 346 326 347 0.95 10 34 0.0028 0.25 12.9 2.6 1 21 370 390 370 391 0.96 11 34 0.00017 0.015 16.8 4.7 1 20 399 418 399 420 0.96 12 34 0.0022 0.19 13.3 1.2 1 21 426 446 426 447 0.96 13 34 0.031 2.8 9.7 0.9 1 21 455 475 455 476 0.91 14 34 8.5e-05 0.0076 17.7 0.2 1 21 482 502 482 503 0.95 15 34 0.046 4.1 9.1 1.1 1 22 525 546 525 546 0.95 16 34 1.5e-05 0.0013 20.1 0.9 1 21 553 573 553 574 0.97 17 34 0.046 4.1 9.1 1.1 1 22 596 617 596 617 0.95 18 34 5.7e-05 0.0051 18.3 1.6 1 21 624 644 624 645 0.97 19 34 0.11 9.7 8.0 0.6 1 21 696 716 696 717 0.94 20 34 0.99 88 4.9 0.6 1 21 725 745 725 746 0.91 21 34 0.0063 0.56 11.9 1.0 2 21 753 772 752 773 0.94 22 34 3.8e-05 0.0034 18.8 0.6 2 21 782 801 782 802 0.94 23 34 0.027 2.4 9.9 3.4 1 20 834 853 834 855 0.93 24 34 0.0005 0.045 15.3 5.0 1 21 863 883 863 884 0.96 25 34 0.048 4.2 9.1 3.7 1 21 890 910 890 911 0.95 26 34 4.9 4.4e+02 2.8 3.5 1 14 938 951 938 952 0.90 27 34 0.0075 0.66 11.6 2.0 1 21 972 992 972 993 0.94 28 34 0.046 4 9.1 3.5 1 21 1001 1021 1001 1022 0.95 29 34 0.00043 0.038 15.5 0.7 1 21 1028 1048 1028 1049 0.95 30 34 2.8e-05 0.0025 19.2 1.1 1 22 1071 1092 1071 1092 0.97 31 34 0.016 1.4 10.6 1.9 1 21 1099 1119 1099 1120 0.96 32 34 0.0011 0.1 14.2 1.2 1 22 1126 1147 1126 1147 0.95 33 34 0.0012 0.11 14.1 1.4 1 21 1155 1175 1155 1175 0.94 34 34 4e-06 0.00036 21.9 4.3 1 22 1182 1203 1182 1203 0.97
Sequence Information
- Coding Sequence
- ATGGCTCACTCCTGTCACGAAGATGAATGGGAATACAATGTGTATACTGATTCTAGAGAAAAGCATCATATCTGCATGGTATACGGCTCTCGGAAGCAAACCGCGAGGTCGCCACTCAAGTCTTCGCCCAAACTGTGTAAATGCGGAAAATCTTACAACACGCGGCCTCCAAATTTAAATCGACAGATAACTTATGGATGTAAAAACAAGGCACGTGCCTTTCAATGTCTGTATTGCGATAAATACTTCAAGCATTACGTATATCGATTAGTACCAGTACCGGATAAAACAGCTCCAAGCGAAGTTTTCACTTGCGCAACGTGTGGAAAAGTGTACAAGAAACGTTTTATCCTCAACCGCCATCTGCAGTACGAGTGTCAGCAAGAACCGAAGTACACTTGTCCGTTTCGCTTCTGCGCACACAGGTCGAAGCGCAAAGATGACATGAAAAAACACGTCGCGAAAAGACACAAGGACATTAataatatgaGAGCTGGCAGCATACCATTTCAATACGTGAACGTAGCTTCGAAGAAAGTTGACCCTCAGCGGTTCGTGTGCGCCGACTGCGGAAAGAGCTTCTCGAGGAAGAATAAACTTTCCGTGCACATGCTTCACGAGTGTGGTAAAACCATCAACTGCTTCGTCTGTGGCAAACCCTTCAAGACGCGTGGCGCCTACTCGAACCACTTGAACCACGAATGCGGACGAAAGGAGCCACTCCAGTGTACCGCGTGCAATCGTAACTTCAAGCAAACGGCCAACTTGACGTACCACCTGAAGCATGAATGCGGGGTGTTGTTGGTCTGTCCCAAGTGCAACAAGGCGTACAAGTCGAAGGCGGGCTATGCGAATCACGTCAACTACGACTGCGGCACGTCGAACACGCACCGAGTGCAGTGTCCGAAATGCAACAAGAGTTTCACGAAGGACGCGCAAGTGACGTATCACTTGAAGAACGAGTGCGGCGTCTCGTTTGTTTGCCCCGCGTGCGATAGGAGTTTCTCGAGGAAATGGCTGCTCAGTTCCCATCTGAAGTACAGGTATTTTGAGGATGTACAGTCGATTATTGTCACTCCATCTCTAGACTTGTTCCAAGATTGTCGCTTCCAATGCGCGCGCTGCTACAAGAGCTATAAACACAAACCCACCCTGAACTCCCACATGAAACACGAGTGTGGTAAACGCACGTCGTTCCAGTGTTCGTCGTGCAACAAGTGTTTCACCCTCAAGAAGAACTTGACGCGTCACATGACCCATGACTGCGGCAAGTCCTACAAGTGTGTGTCTTGTCAGAAAAGTTACGAGACGTACAGTGCTTTGAACAGCCACATGAGCCACGAATGTGGGCGAAGTGATAGATACAAGTGTGTGAACTGCAGCAAAAGCTTCAAGCAGAACATTCGACTGGCGTTCCACATGAGAAACGAGTGTGGTGTGATGTTTGTTTGTCCGTCTTGTAATGCAAGATTTGGCACTAAAAGTGATCTGAAGCGACATATCATGAAGTGTGATGCTACTAAATTCGAGTCAATATACCTTGCCTCCCCTGATCTGTTTGAGACGCCACTCTTCCACTGCGCACGCTGCAACAGTAATTTCGACGACAAGACCGGACTGTCCCGGCACATTAGGCGAGTGTGCGGGAAGGCATCGTACCAATGCCCGACTTGCACCAATCGCTTCACTCGGGCTGACAGCTTGAGGCGCCACATGAAATACGACTATGCTGCTAGAGTCGAGTCAATATACCTTGCCTCCCCTGATCTGTTTGAGACGCCACTCTTCCACTGCGCACGCTGCAACAGTAATTTCGACGACAAGACCGGACTGTCCCGGCACATTAGGCGAGTGTGCGGGAAGCCATCGTACCAATGCCCGACTTGCACCAATCGCTTCACTCGGACTGACAGCTTGAAGCGCCACATGAAATACGACTGTGTTGCTGGCATTTGGTCCACTGTTGACAGTTCGTCTTCGAAGCCGTACGAGAACAATCCTTCTCGCTTCCACTGCGCACGCTATGGTGCCGACCCGCAGCTCATTACTATAAGCTCAGTGAGGAGTCTGCGTAATGCTTCACGCTTCCAATGCGCGCGCTGCAATAGTAGCTACAAATACAAGCAGGATCTAGTCACACACGTGAACCAAGATTGCGGGAAAAATATCGAATTCAAATGTCCGCTATGTACAAATATCTACGAATCCGAGGAAAACCTGAAGTGTCATTTGAACTACGAGTGTGGTAAATCATTAGAATGCCAAACTTGTAAGAATACTTTCACCACAAGGTACGGTCTGAATACGCACTTGAAGTTCGCTTGTGAAAATGACCAACGTCCTCAATGCCCAGGTTGTGGAAAGAGATTCACTCAGTCGAGTGATCTAAAATTCCACATGAAAAACGAATGTGGCATCACCTTTGCGTGTACTCTATGTGgCGATGGTTCCGAGTCGATTGTTGTCACTCCGGCGTTGGACGTTTACGATACTTCGCGTTTCTACTGCGATCGATGTAACAAGAGCTACAAATACAAGCGCGATCTTGTCAGTCACAACAAGCACGCATGCGGGGTGAGGGGAACATTTCGTTGTCCCACCTGCAATAGATGTTTCTCAGTCAAAAAGAGACTGAATCGACACATGAATCATGAGTGTGGCAAGTTGTTCAAATGTCCGACTTGTGTCAATTGTTATAAAACCAAGTGTGCTCTCAATAGACACGTGAATCTCGAGTGTGGTATAGACGGCGCTGAAGTTTTCGAATCGGTTGTTGTCACTCCAGCGTTGGACGTGTATGATATCTCTCGTTTTCACTGCGATCGCTGTAACAAGAGCTACAAATATAAGCACAGTGGTGTTACTCAGTCTATCGTTGTCACTCCGGAGTTGGACCTATACGACACTTCAGGCTACCACTGTCCTCGCTGCAACAAGGACTTCGAGAACAAGTACCTGTTCTTCACTCACGTTCAACTCGAGTGCGGAAAGAAAGAAATCTTCCGATGTCCAACTTGTTTCTCGTATTTCTCTCAGAAGTGCAGCCTGACTCGCCACGTGAAGGAAGACTGCGGCAAGACTTACGCGTGCCCGTCGTGCCAGAAAACGTACAAGACGAAGAAGACTCTCAACGATCACCTAAACAATGAGTTTGTCGGCGACACTGAGCACATCTTCATCACCCCCACATGGAGCCTCTATGCGCCTCGCTACCAATGCGCACTCTGCAAGAAGAGCTACACGCAGAAGAGCAGTCTGACATTGCACCTCAAGACGTGCGGAAAGAACGCGGTATTCAAGTGCGGCACATGTGAATCGCATTTTTCCTTCAAGAGCGGTTTGATGCACCACATCAAGTGGGACTGCGGTAAAACGTACGAGTGTTCTTCGTGTAAACGTGTCTACAAGACGAAGGTTTCATTCACACGGCACGTGAATACGGAATGTGGAAGAAATGAAACTTATAATTGTCTGAATTGTAATAAGAGTTTCAGAAGAGTGGTAGATTTGAAACATCACGTGAAGTGTTTGTGTGGTGTCGATTTCACGTGTCCGAAATGTAAGAAGACGTTCTATCGGAAAACCTATCTGAAAAAACATATGAAGACGTGTCAGTAA
- Protein Sequence
- MAHSCHEDEWEYNVYTDSREKHHICMVYGSRKQTARSPLKSSPKLCKCGKSYNTRPPNLNRQITYGCKNKARAFQCLYCDKYFKHYVYRLVPVPDKTAPSEVFTCATCGKVYKKRFILNRHLQYECQQEPKYTCPFRFCAHRSKRKDDMKKHVAKRHKDINNMRAGSIPFQYVNVASKKVDPQRFVCADCGKSFSRKNKLSVHMLHECGKTINCFVCGKPFKTRGAYSNHLNHECGRKEPLQCTACNRNFKQTANLTYHLKHECGVLLVCPKCNKAYKSKAGYANHVNYDCGTSNTHRVQCPKCNKSFTKDAQVTYHLKNECGVSFVCPACDRSFSRKWLLSSHLKYRYFEDVQSIIVTPSLDLFQDCRFQCARCYKSYKHKPTLNSHMKHECGKRTSFQCSSCNKCFTLKKNLTRHMTHDCGKSYKCVSCQKSYETYSALNSHMSHECGRSDRYKCVNCSKSFKQNIRLAFHMRNECGVMFVCPSCNARFGTKSDLKRHIMKCDATKFESIYLASPDLFETPLFHCARCNSNFDDKTGLSRHIRRVCGKASYQCPTCTNRFTRADSLRRHMKYDYAARVESIYLASPDLFETPLFHCARCNSNFDDKTGLSRHIRRVCGKPSYQCPTCTNRFTRTDSLKRHMKYDCVAGIWSTVDSSSSKPYENNPSRFHCARYGADPQLITISSVRSLRNASRFQCARCNSSYKYKQDLVTHVNQDCGKNIEFKCPLCTNIYESEENLKCHLNYECGKSLECQTCKNTFTTRYGLNTHLKFACENDQRPQCPGCGKRFTQSSDLKFHMKNECGITFACTLCGDGSESIVVTPALDVYDTSRFYCDRCNKSYKYKRDLVSHNKHACGVRGTFRCPTCNRCFSVKKRLNRHMNHECGKLFKCPTCVNCYKTKCALNRHVNLECGIDGAEVFESVVVTPALDVYDISRFHCDRCNKSYKYKHSGVTQSIVVTPELDLYDTSGYHCPRCNKDFENKYLFFTHVQLECGKKEIFRCPTCFSYFSQKCSLTRHVKEDCGKTYACPSCQKTYKTKKTLNDHLNNEFVGDTEHIFITPTWSLYAPRYQCALCKKSYTQKSSLTLHLKTCGKNAVFKCGTCESHFSFKSGLMHHIKWDCGKTYECSSCKRVYKTKVSFTRHVNTECGRNETYNCLNCNKSFRRVVDLKHHVKCLCGVDFTCPKCKKTFYRKTYLKKHMKTCQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -