Bris010125.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Brachyptera risi
Gene Symbol
-
Assembly
GCA_964007535.1
Location
OZ023328.1:5093814-5114535[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 6.1e-07 5.4e-05 24.5 2.8 1 23 200 222 200 222 0.99
2 16 6.1e-07 5.4e-05 24.5 2.8 1 23 237 259 237 259 0.99
3 16 6.1e-07 5.4e-05 24.5 2.8 1 23 274 296 274 296 0.99
4 16 5.4e-05 0.0048 18.4 1.2 1 20 311 330 311 333 0.94
5 16 6.1e-07 5.4e-05 24.5 2.8 1 23 348 370 348 370 0.99
6 16 6.1e-07 5.4e-05 24.5 2.8 1 23 385 407 385 407 0.99
7 16 6.1e-07 5.4e-05 24.5 2.8 1 23 422 444 422 444 0.99
8 16 6.1e-07 5.4e-05 24.5 2.8 1 23 459 481 459 481 0.99
9 16 0.017 1.5 10.5 1.2 7 23 502 518 496 518 0.86
10 16 6.1e-07 5.4e-05 24.5 2.8 1 23 533 555 533 555 0.99
11 16 2.3e-05 0.0021 19.5 0.5 1 23 561 583 561 583 0.97
12 16 1e-05 0.0009 20.6 2.9 1 23 589 611 589 611 0.99
13 16 0.0033 0.29 12.7 7.7 1 21 617 637 617 639 0.95
14 16 4e-05 0.0035 18.8 0.6 1 23 645 667 645 667 0.98
15 16 0.0053 0.47 12.1 8.4 1 23 673 695 673 695 0.96
16 16 9.7e-05 0.0086 17.6 0.1 1 23 701 725 701 725 0.97

Sequence Information

Coding Sequence
ATGGAATCCACCTTCAGCGTGTCGCTGATGAGTAAAGTTTGTCGCATATGTATGGGAGCAGAAAAACACATGAAGCAAATCTTCGACGAAACCGACTGCATAAGATCTGACTCCATCGCATCTCGAATACAATCAATTACAGAACTGAAGATATCCCCCGGGGACGGACTGCCCACGCAGATCTGCCAGCACTGCTTCGAGCGCCTGCAGCTGTCCTACGAGTTCAAGCAGCTGTCTCGCACTACCGACTCCGTGCTTCGCTCCAAGCTGGCCTCGTCCAAGTATCCGAGTCTGAACACGGGCGTGGCGGTGGACCGGGACTCGGACGACCCCAGCGAGGACTGGGACCTGGAGGACGTGTCCCTCAAGTACAAGTGCCAGGCCGTGCTGCAGACCGCCCAGGGGAAGACAACAGACAccgaggaggaggaggaagaggaagagcCGCCTCCCCTCCGGCCAGACGACCAACACCAGCCAGAGGGCTCTGATGACGAGGCCGAGGCGGAGACAGAGGTCGACGCCCAGGCTGCCTCGTCATCCGGCCAACAAGGGGCCGCAGACGTGACTCCGCCCAACAGCAAGCTTACCAAGAACTTCCAGTGCACAGAGTGTCCGAAGAGTTACACCAACCGCAAGACCCTGGCCCATCACATGCGGATACACACAGGTAAGCTGACCCCGCCCAACAGCAAGCTTACCAAGAACTTCCAGTGCACAGAGTGTCCCAAGAGTTACACCAACCGCAAGACCCTGGCCCATCACATGCGGATACACACAGGTAAGCTGACCCCGTCCAACAGCAAGCTTACCAAGAACTTCCAGTGCACAGAGTGTCCGAAGAGTTACACCAACCGCAAGACCCTGGCCCATCACATGCGGATACACACAGGTAAGCTGACTCCGCCCAACAGCAAGCTTACCAAGAACTTCCAGTGCACAGAGTGTCCCAAGAGTTACACCAACCGCAAGACCCTGGCCCATCACATCTGGATACACACAGGTAAGCTGACTCCGCCCAACAGCAAGCTTACCAAGAACTTCCAGTGCACAGAGTGTCCCAAGAGTTACACCAACCGCAAGACCCTGGCCCATCACATGCGGATACACACAGGTAAGCTGACCCCGCCCAACAGCAAGCTTACCAAGAACTTCCAGTGCACAGAGTGTCCCAAGAGTTACACCAACCGCAAGACCCTGGCCCATCACATGCGGATACACACAGGTAAGCTGACCCCGCCCAACAGCAAGCTTACCAAGAACTTCCAGTGCACAGAGTGTCCCAAGAGTTACACCAACCGCAAGACCCTGGCCCATCACATGCGGATACACACAGGTAAGCTGACCCCGCCCAACAGCAAGCTTACCAAGAACTTCCAGTGCACAGAGTGTCCCAAGAGTTACACCAACCGCAAGACCCTGGCCCATCACATGCGGATACACACAGGTAAGCTGACCCCGCCCAACAGCAAGCTTACCAAGAACTTCCAGTGCACAGAGTATCCCAAGAGTTACACCAACCGCAAGACCCTGGCCCATCACATGCGGATACACACAGGTAAGCTGACCCCGCCCAACAGCAAGCTTACCAAGAACTTCCAGTGCACAGAGTGTCCGAAGAGTTACACCAACCGCAAGACCCTGGCCCATCACATGCGGATACACACAGGCCAGAACCTGCACGAGTGCCCGGTGTGCAAGAAGACGTTCATCTACCCGTACCTGCTGTCAGAGCACGCACGGATCCACACGGGGGAGTGCCCCTACGTCTGCAGCGTCTGCTCCAAGGCCTTCAACCACAAGAACGACTTCGGCAAGCACATGCGCACGCACACCAAGGAGAAGCCCTTCATGTGCAACTTCTGCCACAAGTTCTTCTCACAGAAAGGCCACCTCGTAGTGCACCTGCGCTGTCACACGGGGGAGAAGCCGTACGTGTGCTCCGTGTGCTCCAAGTCGTTTGCCTACCAGAACTCCCTGTCCCTGCACGTTCGGAACCACTCGGAGATCAAGAACCACCACTGCGCCTTCTGCTCCAAGTCCTTCCCGCACGAGAAGAACCTGAAGAAGCACCTCAAGTACCACACAAACCGCAAGCCGTACGTGTGCACCGTGCCAGGCTGCCCCAAGGCCTTCTTCTACCCCGGCGACCTTGAGGCTCACCATCGCGTGCACACAGGCGAGAGACCCTTCTCctgcgagCTGATTACACAGCTGTTAACCCTCGTGTACTGGTCCAGTGTATTGATTGTTGTGTGGTTGGCCGCAGGTGTGCAACAAGACTTTCATTCAGAAGCGCCAACTGACGTCCCACTCCCGAGTCCACGCAGAGGAGACGTGAAACAACGACAATGTTCCTGTCACAATCGAATAGTTCTCCTCTTTCCCACGTCCGTCTTCTCGGCAAGCGCTGTCGTCTGCCAACCAGAACCGTAG
Protein Sequence
MESTFSVSLMSKVCRICMGAEKHMKQIFDETDCIRSDSIASRIQSITELKISPGDGLPTQICQHCFERLQLSYEFKQLSRTTDSVLRSKLASSKYPSLNTGVAVDRDSDDPSEDWDLEDVSLKYKCQAVLQTAQGKTTDTEEEEEEEEPPPLRPDDQHQPEGSDDEAEAETEVDAQAASSSGQQGAADVTPPNSKLTKNFQCTECPKSYTNRKTLAHHMRIHTGKLTPPNSKLTKNFQCTECPKSYTNRKTLAHHMRIHTGKLTPSNSKLTKNFQCTECPKSYTNRKTLAHHMRIHTGKLTPPNSKLTKNFQCTECPKSYTNRKTLAHHIWIHTGKLTPPNSKLTKNFQCTECPKSYTNRKTLAHHMRIHTGKLTPPNSKLTKNFQCTECPKSYTNRKTLAHHMRIHTGKLTPPNSKLTKNFQCTECPKSYTNRKTLAHHMRIHTGKLTPPNSKLTKNFQCTECPKSYTNRKTLAHHMRIHTGKLTPPNSKLTKNFQCTEYPKSYTNRKTLAHHMRIHTGKLTPPNSKLTKNFQCTECPKSYTNRKTLAHHMRIHTGQNLHECPVCKKTFIYPYLLSEHARIHTGECPYVCSVCSKAFNHKNDFGKHMRTHTKEKPFMCNFCHKFFSQKGHLVVHLRCHTGEKPYVCSVCSKSFAYQNSLSLHVRNHSEIKNHHCAFCSKSFPHEKNLKKHLKYHTNRKPYVCTVPGCPKAFFYPGDLEAHHRVHTGERPFSCELITQLLTLVYWSSVLIVVWLAAGVQQDFHSEAPTDVPLPSPRRGDVKQRQCSCHNRIVLLFPTSVFSASAVVCQPEP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-