Bris011925.3
Basic Information
- Insect
- Brachyptera risi
- Gene Symbol
- -
- Assembly
- GCA_964007535.1
- Location
- OZ023328.1:40845530-40856695[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 1.1 95 4.8 1.5 5 23 32 50 30 50 0.93 2 21 0.00025 0.022 16.3 0.4 1 23 61 84 61 84 0.94 3 21 1.6 1.4e+02 4.3 0.2 2 23 88 109 88 109 0.93 4 21 0.019 1.7 10.4 6.2 1 23 115 138 115 138 0.97 5 21 5.7 5e+02 2.6 2.0 1 23 153 176 153 176 0.85 6 21 0.023 2 10.1 0.0 1 23 182 204 182 204 0.95 7 21 7.6e-06 0.00067 21.0 0.5 1 23 208 231 208 231 0.97 8 21 0.00031 0.028 16.0 0.2 2 23 240 261 239 261 0.96 9 21 5.8e-05 0.0051 18.3 5.7 1 23 284 306 284 306 0.96 10 21 1.5e-05 0.0013 20.1 0.1 1 23 312 334 312 334 0.98 11 21 1.6 1.4e+02 4.3 4.3 1 23 399 421 399 421 0.97 12 21 0.77 68 5.3 4.8 1 23 428 450 428 450 0.97 13 21 5.6e-06 0.00049 21.5 2.1 1 23 456 478 456 478 0.98 14 21 0.062 5.4 8.7 5.4 1 23 484 506 484 506 0.99 15 21 0.0011 0.094 14.3 1.3 1 23 512 534 512 534 0.98 16 21 2.7e-06 0.00024 22.4 0.8 1 23 540 562 540 562 0.99 17 21 5.5e-05 0.0048 18.3 3.9 1 23 573 595 573 595 0.97 18 21 1.9e-06 0.00017 23.0 2.3 1 23 600 622 600 622 0.95 19 21 0.00053 0.047 15.2 2.7 1 23 628 650 628 650 0.97 20 21 2e-06 0.00018 22.9 3.3 1 23 656 678 656 678 0.98 21 21 3e-06 0.00026 22.3 0.4 1 23 684 706 684 706 0.98
Sequence Information
- Coding Sequence
- ATGTCGAAGATTTCTGAACCAGCAAGACATGGTATGTCCAGGAGATCAGGGATTATAAAGCAATCTGTGAAGAAGAAGACGAAGTACATGTGTCAATGTCTCAGAGTATATTTTAACAGAAAAGAGTTCAAGCGTCATCAAATACTACATCAAATACGTGCAGAAAAAGCTGTTTGCTCTTACGAGTGTGATGCCTGCAAGAAAATCTTTCGTACAAAACGTGATCTAATCGTGCATTTAGACTACATGCATAAGAAAAGAACATGTAAGAAATGTAATGCCACAATAGATTCTCAAATGTTATTGGACTTGCATTTAGAAGCTCACTCAAAAGAAAGGAATTTCAAGTGTACAATTTGTTCAAAAGATTTCTTGAAAAAGAAACATTTTACCAATCATATGGAAAAGAAACATGTACCAACATGGATAGttaaaaaggaaagaaaaaagACTGTGCATACTTGCAACAAATGTGACTTTTCTACGTTGAAGAGATCAAGTCTTGTTCCTCATATGGGTCGGTTCCACAATGGACCACTTGATTATCCTTGTCTCGTTTGCGGAAAAGCTTTCTGGAGTCAGGCTCGCTTGAAGTATCATGCTGAAATACACGAAAATTCCTTCATCTGTGCACAATGTGGAATGACTTTTATACGATCGGTCTATTTGAAGAAACATATAAAACGTATCCATGAATATGTTCCTCGAGCAAAGAAAGTTTGTGAAGTATGTGGGAAAGAATTCAATGCGTATGCTGCCTTCAAACGTCATATGGAAAATCACTACGAGAAAGACAAGTATAAATggttcACCGTAGGATTCATACAGGTTCATACCGGAGAGAAGAATCATCATTGCACTCAATGTGATAAGAGTTTTGCTCAACGTTCGTCATTGACTTTACATCTGAAATATCATTCTGGGCTAAAACCATTCGAGTGTGAACTTTGCGACAAGGCGTTCATCACGAAACCGTTGTTAGCAGCTCATGAGAAAACTCACGCTTCATCTGCGAGCGAAAGTTCTAGTGTAAGTTTGAAATACAGAAAGAAAACTACTACAAAAATTCGTAGCGGGTCTAAAAATAGCCACAAACCAAAACGAAAAGATCTTGAAAAATGTACAGTTTGCGCTGAGCTTTTTactcatgaagaaatgttaGTCCACAAGCAACGCCACAACGGAATCAAGCCGCACTATTGCCTTATATGTGAGACGCCGCATAACACGAAAACTCGACTCAAGATTCACATGAAATCACACAGTGGGAAACACAAAGAGTTTAGGTGTACCACTTGTATGAAGGAGTGCTTATCTAATAAACTCTTGAAACGTCACATGAGCAGTCACAGCGATTTGAGAAattttgaatgtgaaatatgtaaTCGACGCTTTAAACGGTCGTACGAAGTAACAAAACATAAGCGAATCCATGAAGACATTAAGAACTACCGATGTAGCCTTTGTGATTATGCTACAATGCATAAAGCATGTCTAGAAACACACAAGAAGAGACATCTAGGTGACTACATATTCAAATGCACTGTTTGTGCTAAAGGCTTCTTTTCAAGCTTTGAATACCGAGAGCATCAAAATATCCATAAAAATATAAAACCCTATCAGTGTGAAATATGCGGCTTGTCATACACTTCTAAGAACAGTCTGATGGTTCATAAGAAGACGCACGAACCCGACGCAAAACCAACAGAGAAATCACATTCCTGTCCGAATTGTACGAAAAGCTTCAAATATCGGAAAAGTTTGCTGGTTCATTTAAAGTCCCATTCAAATGAGAAATTTCTTTGTGATTATTGTGGGAAGAATTTTTCTACAAAAGATACTTTGAAACTTCACCGTCGCAATCATACCGGAGATAAGCCATTCACGTGTTCCGTGTGCTCAAAATCGTTTTCTGCACACTACACTCTTAAAATACACAAACTAATCCACACCGGCGAGAAAAGACACAAGTGTGAGATATGCTCCAAGAGTTTTACTCAGCGTTCCACTCTAGTCGTTCACCGACGCTCGCATACTGGACAACGACCATATATCTGCGGCATTTGCAATAAGAGCTTTGTTTCGCGTACCCTGCTCAATACTCACCTGAAGGTCCACGAAGAAGGATCGTATTACAAACAAATGTTTCCAATTACCAACTTCTAA
- Protein Sequence
- MSKISEPARHGMSRRSGIIKQSVKKKTKYMCQCLRVYFNRKEFKRHQILHQIRAEKAVCSYECDACKKIFRTKRDLIVHLDYMHKKRTCKKCNATIDSQMLLDLHLEAHSKERNFKCTICSKDFLKKKHFTNHMEKKHVPTWIVKKERKKTVHTCNKCDFSTLKRSSLVPHMGRFHNGPLDYPCLVCGKAFWSQARLKYHAEIHENSFICAQCGMTFIRSVYLKKHIKRIHEYVPRAKKVCEVCGKEFNAYAAFKRHMENHYEKDKYKWFTVGFIQVHTGEKNHHCTQCDKSFAQRSSLTLHLKYHSGLKPFECELCDKAFITKPLLAAHEKTHASSASESSSVSLKYRKKTTTKIRSGSKNSHKPKRKDLEKCTVCAELFTHEEMLVHKQRHNGIKPHYCLICETPHNTKTRLKIHMKSHSGKHKEFRCTTCMKECLSNKLLKRHMSSHSDLRNFECEICNRRFKRSYEVTKHKRIHEDIKNYRCSLCDYATMHKACLETHKKRHLGDYIFKCTVCAKGFFSSFEYREHQNIHKNIKPYQCEICGLSYTSKNSLMVHKKTHEPDAKPTEKSHSCPNCTKSFKYRKSLLVHLKSHSNEKFLCDYCGKNFSTKDTLKLHRRNHTGDKPFTCSVCSKSFSAHYTLKIHKLIHTGEKRHKCEICSKSFTQRSTLVVHRRSHTGQRPYICGICNKSFVSRTLLNTHLKVHEEGSYYKQMFPITNF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -