Bris036097.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Brachyptera risi
Gene Symbol
-
Assembly
GCA_964007535.1
Location
OZ023339.1:3005954-3028880[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 34 0.001 0.091 14.3 3.3 1 23 169 191 169 191 0.98
2 34 0.0051 0.45 12.1 7.5 1 23 197 219 197 219 0.98
3 34 0.0079 0.7 11.5 1.2 1 23 225 247 225 247 0.97
4 34 0.0018 0.16 13.5 0.7 1 23 253 275 253 275 0.97
5 34 0.00049 0.044 15.3 1.1 1 23 281 303 281 303 0.97
6 34 0.029 2.5 9.8 1.7 1 23 309 331 309 331 0.98
7 34 0.00061 0.054 15.0 0.2 1 23 337 359 337 359 0.98
8 34 1.7e-05 0.0015 19.9 2.7 1 23 365 387 365 387 0.98
9 34 0.0011 0.094 14.3 1.7 1 23 393 415 393 415 0.98
10 34 0.00026 0.023 16.2 1.4 1 23 421 443 421 443 0.97
11 34 0.00027 0.024 16.2 5.6 1 23 449 471 449 471 0.98
12 34 8.3e-06 0.00074 20.9 2.5 1 23 477 499 477 499 0.99
13 34 0.0012 0.11 14.1 2.8 1 23 639 661 639 661 0.98
14 34 0.0051 0.45 12.1 7.5 1 23 667 689 667 689 0.98
15 34 0.0079 0.7 11.5 1.2 1 23 695 717 695 717 0.97
16 34 0.0018 0.16 13.5 0.7 1 23 723 745 723 745 0.97
17 34 0.0015 0.13 13.8 1.6 1 23 751 773 751 773 0.97
18 34 0.00049 0.044 15.3 1.1 1 23 779 801 779 801 0.97
19 34 0.029 2.5 9.8 1.7 1 23 807 829 807 829 0.98
20 34 0.00061 0.054 15.0 0.2 1 23 835 857 835 857 0.98
21 34 1.7e-05 0.0015 19.9 2.7 1 23 863 885 863 885 0.98
22 34 0.0007 0.062 14.9 1.1 1 23 891 913 891 913 0.98
23 34 0.00026 0.023 16.2 1.4 1 23 919 941 919 941 0.97
24 34 0.00027 0.024 16.2 5.6 1 23 947 969 947 969 0.98
25 34 8.3e-06 0.00074 20.9 2.5 1 23 975 997 975 997 0.99
26 34 0.63 55 5.6 0.1 3 23 1146 1166 1144 1166 0.96
27 34 5.8e-05 0.0052 18.2 2.7 1 23 1172 1194 1172 1194 0.99
28 34 0.031 2.7 9.7 6.2 1 23 1200 1222 1200 1222 0.98
29 34 1.7e-05 0.0015 19.9 2.7 1 23 1228 1250 1228 1250 0.98
30 34 0.00071 0.063 14.8 1.3 1 23 1256 1278 1256 1278 0.98
31 34 0.00026 0.023 16.2 1.4 1 23 1284 1306 1284 1306 0.97
32 34 1.8e-05 0.0016 19.8 2.0 1 23 1312 1334 1312 1334 0.98
33 34 0.0065 0.57 11.8 0.4 1 23 1340 1362 1340 1362 0.98
34 34 0.013 1.1 10.9 0.6 1 23 1368 1390 1368 1390 0.98

Sequence Information

Coding Sequence
ATGGACCTGGATCCTCTGGTTGTGGTGAAACAGGAGAGAGATCACACGGACACCGTAGTGAAGGAGGAACCACTGGATGAGTGTGAATCAGtggctgctaacatgactgagtgtgatcccagcaagtgtgaagtgacGGCACAGTTTTTTGAGCCAGCCTCTCCAATATTGGCGCACGGAATAAAGCAGGAGGAGCCCCTTGTATTGGAACAGGAAGAACTGGATATCAAGGATAAGAGTACATTCAAGACAGAAGAATTGGTCGAGATTGCTTTTGTGACTGTTGAAGAGGAACTCCATGAAGTCTGTTCCAATACTCGAGCAGATGAGATAAGCAAGAATGAAAACACCTGGGACCTCACTGAACAAGATACTGACACACAAACATCATCTACGAGAGTGGACAATGACATGGACCCTCTGAAGACCGTCTCTACTGGAATGAAGAACGAAGGACTATGTATTCTTGAAGAACATGTGATGATAAACACTAATGACGAGGTATTCAAATGCGTGGAATGTTCTTATAAGTGCGGACGGGCTTTCAACCTGAAACAACACATGCTGACACACACAGAAGAAAGGCCATTTCATTGCAAGCGATGTTCCCTCAAGTTCCGTCGAGCTCACAGTCTGAAACTGCATATGATGAAACACACCGGCGAGAAGCCATTTCATTGCAAGGAATGTCCTTATAAGACCAGTCGAGCTGCTGTGCTGAAATCACACTTGGTGACACACACCGGTGAGAAGCCATTTCATTGCAAGGAATGTCCTTATAGTGCCAGTCGGGCTGCCATGCTGAAATCACACTTGGTGACACACACCGGTGAGAAGCCATTTCATTGCAAGGAATGTTCCTATAAGGGCAGTCGGGCTGATGATCTAAAAAGACACATAATAGTACATAACAGTGAAAAGCCATTCCAGTGCAAAGTATGTTGTCAGAATTTCAGTCAGGCTCCAGTACTCAAGATACACATGTTGAAACACACCGGTAAGAGGCCTTACCAGTGCGTGGAATGTTCTTATAACTCTAATCGAGCTGATGATCTAAGAACACACATGATAGTACATACCGGTGAGAAGCCATTTCATTGCAAGGAATGTTCTCAGAAGTTCAGTCGGGCTGATGAACTCAAAGTACACATGTTGAAACACACCGGTGAGAAGCCTCACCAGTGCGTGGAATGTTCGTATAAGTCTAATCGGGCTAGTGATCTAAAAACACACATGGTGACACATACCGGAGAGAAGCCATTTCATTGCAATGTATGTTCTCAGAAGTTCAGTCGAGCTGGTGAACTAAAAGTACACAAGTTGATACATACCGGTGAGAAGCCATTCCAGTGCAAACATTGTTTTTTCAAGAGCAATCAGTCATCTAACCTGAAACGACACATGATGATACACTTTGGTGAAAAGCCATTCCAGTGCAAGGAATGTACTTATAAGTCCACTCGAGCAAGTAGTCTGAAACgacacatgttgacacacaCAGTGGTTGCTAACATGAccgagtgtgatcccagcaagtgtgaagtaacgggaCAGTTTTTTGAGCCAGCCTCTGTTAGCTCGGAGCACGGAATAAAGCAGGAGAAGCTACCTGTATTGGAACAGGAAGAACTGGAAATCAAGGATAAGAGTACATTCAAGACGGAAGAATTGGTCGAGATTGCTTTTGTGACTGTTGAAGAAGAACCACATGAAGTCTGTTCCAATACTCGAGCAGATGAGATAAGCAAGAATGAAAACACCTGGGACCTCACTGAACAAGATACTGACACACAAACATCATCTACGAGAGTGGACAATGACATGGACCCTCTGAAGACCGTCTCTACTGGAATGAAGAACGAAGGACTATGTATTCTTGAAGAACATGTGATGATAAACACTAATGACGAGGTATTCAAATGCGTGGAATGTTCTTATAACTGCGGACGGGCTTTCAACCTGAAACAACACATGCTGACACACACAGAAGAAAGGCCATTTCATTGCAAGCGATGTTCCCTCAAGTTCCGTCGAGCTCACAGTCTGAAACTGCATATGATGAAACACACCGGCGAGAAGCCATTTCATTGCAAGGAATGTCCTTATAAGACCAGTCGAGCTGCTGTGCTGAAATCACACTTGGTGACACACACCGGTGAGAAGCCATTTCATTGCAAGGAATGTCCTTATAGTGCCAGTCGGGCTGCCATGCTGAAATCACACTTGGTGACACACACCGGTGAGAAGCCATTTCATTGCAAGGAATGTCCTTATAAGACCAGTCGAGCTGCTATGCTGAAATCACACTTGGTGACACACACCGGTGAGAAGCCATTTCATTGCAAGGAATGTTCCTATAAGGGCAGTCGGGCTGATGATCTAAAAAGACACATAATAGTACATAACAGTGAAAAGCCATTCCAGTGCAAAGTATGTTGTCAGAATTTCAGTCAGGCTCCAGTACTCAAGATACACATGTTGAAACACACCGGTAAGAGGCCTTACCAGTGCGTGGAATGTTCTTATAACTCTAATCGAGCTGATGATCTAAGAACACACATGATAGTACATACCGGAGAGAAGCCATTTCATTGCAAGGAATGTTCTCAGAAGTTCAGTCGGGCTGATGAACTTAAAGTACACATGTTGAAACACACCGGTGAGAAGCCTCACCAGTGCGTGGAATGTTCGTATAAGTCTAATCGGGCTAGTGATCTAAAAACACACATGATAGTACATACCGGAGAGAAGCCATTTCATTGCAATGTATGTTCTCAGAAGTTCAGTCGAGCTGGTGAACTAAAAGTACACAAGTTGATACATACCGGTGAGAAGCCATTCCAGTGCAAACATTGTTTTTTCAAGAGCAATCAGTCATCTAACCTGAAACGACACATGATGATACACTTTGGTGAAAAGCCATTCCAGTGCAAGGAATGTACTTATAAGTCCACTCGAGCAAGTAGTCTGAAACgacacatgttgacacacaCAGTGGTTGCTAACATGAccgagtgtgatcccagcaagtgtgaagtaacgggaCAGTTTTTTGAGCCAGCCTCTGTTAGCTCGGAGCACGGAATAAAGCAGGAGAAGCTACCTGTATTGGAACAGGAAGAACTGGATATCAAGGATAAGAGTACATTCAAGACAGAAGAATTGGAGGAGATTGCTTTTGTGACTGTTGAAGAGGAACTCCATGAAGTCTGTTCCAATACTCAAGCAGATGAGATAAGcaagaatgaaaaaaacacCTGGGACCTCACTGAGCAAGATACTCACACACAAACATCATCTACGAGTGTGAACAATGATATGGAGCCTCTAAAGACAGCTCCTAGTGGAATGAAGAATGAGAGAGAAGAGCTGTTATCTGAGAAGAACATGAGAAAGAATGCAAATGAAGAGACATTCGAAGTTTCATCCACCATCTGCCGTGTGTGTGGTTATGAGACCGCCAACTCGAAAATACTAGTTCAACATATGATTATACACACTAATGAACAGTTATTCCAATGCGTGGAATGCTCTTATAAATGCAGACGAGCTGGTAATCTGAAACAACACATGCTGACACACACAAAAGAGAAACCATTTCATTGCAAGCAATGTTCTCTCGAGTTTTGTCTAGCTCGCAGTCTGAAACTACATATGAGGAAACACACCGGTGAGGAGCCATTTCATTGCAAGGAATGTTCTCAGAAGTTCAGTCGGGCTGATGAACTTAAAGTACACATGTTGAAACACACCGGTGAGAAGCCTCACCAGTGCGTGGAATGTTCGTATAAGTCTAATCGGGCTAGTGATCTAAGAACACACATGTTGATACACACCGGTGAGAAGCCATTTCATTGCAATGTATGTTCTCAGAAGTTCAGTCGAGCTGGTGAACTAAAAGTACACAAGTTGATACATACCGGTGAGAAGCCATTCCAGTGCAATGAATGTTCTTTCAAGAGCAACCAGTCATCTAACCTAAAACGACACATGATGATACACTCTGGTGAAAAGCCATTCCAGTGTGATGCATGTACTTTTAAGTCCAATCAGGCCAGTAGTCTGAAAGAACACATGTTGATACACACTGGTCAGCAGCCATTCCAGTGTAAGGAATGTTCTTTCAAGTCAAGTTGGCCAGGAAGTCTGAGAAAACACATGTTGATACACACTGCTGACAAACCATTGAACTAA
Protein Sequence
MDLDPLVVVKQERDHTDTVVKEEPLDECESVAANMTECDPSKCEVTAQFFEPASPILAHGIKQEEPLVLEQEELDIKDKSTFKTEELVEIAFVTVEEELHEVCSNTRADEISKNENTWDLTEQDTDTQTSSTRVDNDMDPLKTVSTGMKNEGLCILEEHVMINTNDEVFKCVECSYKCGRAFNLKQHMLTHTEERPFHCKRCSLKFRRAHSLKLHMMKHTGEKPFHCKECPYKTSRAAVLKSHLVTHTGEKPFHCKECPYSASRAAMLKSHLVTHTGEKPFHCKECSYKGSRADDLKRHIIVHNSEKPFQCKVCCQNFSQAPVLKIHMLKHTGKRPYQCVECSYNSNRADDLRTHMIVHTGEKPFHCKECSQKFSRADELKVHMLKHTGEKPHQCVECSYKSNRASDLKTHMVTHTGEKPFHCNVCSQKFSRAGELKVHKLIHTGEKPFQCKHCFFKSNQSSNLKRHMMIHFGEKPFQCKECTYKSTRASSLKRHMLTHTVVANMTECDPSKCEVTGQFFEPASVSSEHGIKQEKLPVLEQEELEIKDKSTFKTEELVEIAFVTVEEEPHEVCSNTRADEISKNENTWDLTEQDTDTQTSSTRVDNDMDPLKTVSTGMKNEGLCILEEHVMINTNDEVFKCVECSYNCGRAFNLKQHMLTHTEERPFHCKRCSLKFRRAHSLKLHMMKHTGEKPFHCKECPYKTSRAAVLKSHLVTHTGEKPFHCKECPYSASRAAMLKSHLVTHTGEKPFHCKECPYKTSRAAMLKSHLVTHTGEKPFHCKECSYKGSRADDLKRHIIVHNSEKPFQCKVCCQNFSQAPVLKIHMLKHTGKRPYQCVECSYNSNRADDLRTHMIVHTGEKPFHCKECSQKFSRADELKVHMLKHTGEKPHQCVECSYKSNRASDLKTHMIVHTGEKPFHCNVCSQKFSRAGELKVHKLIHTGEKPFQCKHCFFKSNQSSNLKRHMMIHFGEKPFQCKECTYKSTRASSLKRHMLTHTVVANMTECDPSKCEVTGQFFEPASVSSEHGIKQEKLPVLEQEELDIKDKSTFKTEELEEIAFVTVEEELHEVCSNTQADEISKNEKNTWDLTEQDTHTQTSSTSVNNDMEPLKTAPSGMKNEREELLSEKNMRKNANEETFEVSSTICRVCGYETANSKILVQHMIIHTNEQLFQCVECSYKCRRAGNLKQHMLTHTKEKPFHCKQCSLEFCLARSLKLHMRKHTGEEPFHCKECSQKFSRADELKVHMLKHTGEKPHQCVECSYKSNRASDLRTHMLIHTGEKPFHCNVCSQKFSRAGELKVHKLIHTGEKPFQCNECSFKSNQSSNLKRHMMIHSGEKPFQCDACTFKSNQASSLKEHMLIHTGQQPFQCKECSFKSSWPGSLRKHMLIHTADKPLN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-