Bris018477.1
Basic Information
- Insect
- Brachyptera risi
- Gene Symbol
- clz9
- Assembly
- GCA_964007535.1
- Location
- OZ023331.1:6861392-6863347[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.6e-07 0.00011 22.9 0.0 4 41 18 55 17 59 0.89
Sequence Information
- Coding Sequence
- ATGCCTAGGGCAAGGGAGTATGTTCCCAAACCGAAAAAGTACACACAGATTGACTTGAAAGAGGCCCTCATGAATATATCTAGTAATAAAATGACTATTCGAGAAGCAGCTAGGAAGTATAGCATTGATAAGACACTTCTGAGTAGGAGACTTCGCAACGTGAATAATACAAAGCAAGGCAGGAAGACAGTTCTGTCGACTACAGAAGAAGCAGGTCTCGCTAGCAATATTAAGATTATGGCAAAGTGGGGTTTTGCGTTGACCAAAAAAGAAATTCTTATGATTGTTGAAAGCTATGTGTCGGAGAATTCAGTGATAACACCATTCAAAAACGGCAGACCAGGAGATGAATGGTTCCGTTTATTTTGTCGTCGGCATAAACTGAgcataaaaaaaatggaacaacTTGAGGCTAGCAGAAGAAAGGCCACCAGTGATCCGTTTGTCATATATGATTTCTACACGCTACTTAAAGACACAATAGTAAACTTGAAGTTGGAAAATTCTCCCGGACAGATTTGGAATCTCGACGAATCGGGGTTTTCGTCTGACCCGTCTAGAGTCAGGGGCATTGCAGGAATAGGCCAAAAGGTTCACAGGTATATTGCTGGGTCGGGTAAAGAAAATACCACAGTTATGGGGTGTGTTGCTGCTAGCGGGAAGGTTCTGCCACCGCTCATTATCTTCCAGGGAAATAATTTGTGGAGTACTTGGAAGGGCACAAAGGATATTCCTCAAACAATGTACGCGGCCTCGGAAAAAGGTTGGATGACTacgattattttcaatcagtgGTTCTCCAAATTTTGTCATCAAGTGAAGGAAAGGCCATTACTTGTAATACTAGATGGTCACATCACGCACTTGGATTCTGGAACTGTTGCGTTGGCAGTTGAACAGAATATTACAATCCTGAAATTACCCCCGCACACCACAGATGTTCTCCAACCTCTCGATGTATGCTGTTTTGGGCCGTTGAAGTTGATGTGGGACACTCGACTAATCGAATGGCAACGTTTAAATCAACGACGAATGACTAAATCCGAGTTTTCAGACGTGCTCTGTGAAGTCTGGAGAGTTGGAATAACAACATCAAATGTTCTGTCAGGCTTTAAGTCGACTGGAATTTTTCCTGTTGATGCAACAAAGTATCCAGTTCACAGATTCGATCCTGAGAAGTTGAAGCGTTATAATGAGGTAGGCCTGCACAATGAAGTTACAGTCGATGAATCTGTCGAAGAAATTGTATTTGATGGTATGTTAGAGATAATAGATTTACCATCTACTAGCACTACACCCAAGCCTATACAATCGCATACTCCGCAGCGTCAATCTGTGTCTAGTAAGAACTCTGAAAATGGATCTACCGGTAGCTGTGTCTCATCCAAAGTGGATTTCGAAACCCTTCTCTTAAACAAAATTAAACGGACCTCTCCGCCATCGACAACACGAAGGAGGTTAGATCCTAATGCTCGTGTTATCACAGCTGAAGAGTACAGTCAGCAAATCGAAGctttaaagaaaaaacacattGTCAAACACCCAGTAAAGAAATCGTCGAAACCTATCGCGAAGAAACGTCGCCAGAAAATTCTGGATAGTTCAGATTCAGAGGAGGTTGATAACGACTTAGCTCCACCTTTAGGCCCACCTATTTGTGCTTCGGATGAAGATGGCAAAAAGGCAGATGGGGTGAAAGGCTTCGTTCCGAATAGCTACGTTATTGTGCTTTATGAGGGAGAGTACTTCCCTGGAGTGATTGTGAACACTAAACTGGGGTACGTTAGTGTAAGTGTGATGACCATGTCCGGACCACAcgggtggaaatggggggatgAAGATATACTCTGGTACCCAGAAGAAGATATTATCGAGGTTATAAAACCTCCGACTACCAAAAATGGAAGACTGATTTGCAAGGTGCCGGAACTTGCAAAATATAGATCTCAGAAGTAG
- Protein Sequence
- MPRAREYVPKPKKYTQIDLKEALMNISSNKMTIREAARKYSIDKTLLSRRLRNVNNTKQGRKTVLSTTEEAGLASNIKIMAKWGFALTKKEILMIVESYVSENSVITPFKNGRPGDEWFRLFCRRHKLSIKKMEQLEASRRKATSDPFVIYDFYTLLKDTIVNLKLENSPGQIWNLDESGFSSDPSRVRGIAGIGQKVHRYIAGSGKENTTVMGCVAASGKVLPPLIIFQGNNLWSTWKGTKDIPQTMYAASEKGWMTTIIFNQWFSKFCHQVKERPLLVILDGHITHLDSGTVALAVEQNITILKLPPHTTDVLQPLDVCCFGPLKLMWDTRLIEWQRLNQRRMTKSEFSDVLCEVWRVGITTSNVLSGFKSTGIFPVDATKYPVHRFDPEKLKRYNEVGLHNEVTVDESVEEIVFDGMLEIIDLPSTSTTPKPIQSHTPQRQSVSSKNSENGSTGSCVSSKVDFETLLLNKIKRTSPPSTTRRRLDPNARVITAEEYSQQIEALKKKHIVKHPVKKSSKPIAKKRRQKILDSSDSEEVDNDLAPPLGPPICASDEDGKKADGVKGFVPNSYVIVLYEGEYFPGVIVNTKLGYVSVSVMTMSGPHGWKWGDEDILWYPEEDIIEVIKPPTTKNGRLICKVPELAKYRSQK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00243110;
- 90% Identity
- iTF_00243110;
- 80% Identity
- -