Basic Information

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 4 0.14 91 4.0 0.0 6 20 2 16 1 16 0.89

2 4 0.17 1.1e+02 3.7 0.0 1 13 28 40 28 42 0.90

3 4 0.0019 1.3 9.9 0.0 1 20 54 73 54 73 0.94

4 4 0.16 1.1e+02 3.8 0.0 1 13 85 97 85 100 0.90

#	of	c-Evalue	i-Evalue	score	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	4	0.14	91	4.0	6	20	2	16	1	16	0.89
2	4	0.17	1.1e+02	3.7	1	13	28	40	28	42	0.90
3	4	0.0019	1.3	9.9	1	20	54	73	54	73	0.94
4	4	0.16	1.1e+02	3.8	1	13	85	97	85	100	0.90

Coding Sequence: ATGCCGAAAGCTGTGCAGATGGTTGTTGTTGATCAATTGTCCCTGTGCCCATCAGTCAAAAGGACTGCCATCAGACTGACGAAGCCTGAAGACATGCCGAAAGCTGTGCAGATGGTTGTTGTTGATTGTCCCTTCAAAAGGACTGCCATCAGACTGACTAAGCCTGAAGACATGCCGAAAGCTGTGCAGATGGTTGTTGTTGATCAATTGTCCCTGTGCCCATCAGTCAAAAGGACTGCCATCAGACTGACGAAGCCTGAAGACATGCCGAAAGCTGTGCAGATGGTTGTTGTTGATTGTCCCTGTGCCCATCAGTCAAAAGGACTGCCATCAGACTGA
Protein Sequence: MPKAVQMVVVDQLSLCPSVKRTAIRLTKPEDMPKAVQMVVVDCPFKRTAIRLTKPEDMPKAVQMVVVDQLSLCPSVKRTAIRLTKPEDMPKAVQMVVVDCPCAHQSKGLPSD

Sequence clustering based on sequence similarity using MMseqs2