Bris024544.1
Basic Information
- Insect
- Brachyptera risi
- Gene Symbol
- -
- Assembly
- GCA_964007535.1
- Location
- OZ023333.1:20349466-20349894[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.5e-08 1e-05 26.2 0.0 2 36 13 47 12 55 0.87 2 2 3.7 2.4e+03 -0.6 0.0 28 35 86 94 80 97 0.76
Sequence Information
- Coding Sequence
- ATGTCGCCAATTAAGAAAAAGATGTTCAGGTACTCGCCAACAAAGGTGAAAAATGCTCTTGCAGCAATTAAGAATGGAATGCCTGTTCTGAAAGCCAGCAAGCTTTACAAAGTTCCCCGATCTACACTCAGGCACAAAGTGTCTGGGGTATCGCCTCAGAGTTCTGGCAGAACAGGTCCAGAAGCGAGTTTGGGCAATGACGTTGAAAATAAACTTATTTTGTGGCTTACAGAGTCGGCAAAATACGGCTTTCCCATTAATAAATCGTCACTGCAAGATTCGGTACAGTTATTAGTGAAAAAGAATGGCATTCAAACAAAGTTTGTTGATGGTCGACCTGGCCGTAAATGGTTCAAGGCGTTTCTGAAGAGGAATCCAAGTATAAGCTACAACATACGGAGTATGTCAACAACGCTCAAGCAAGTGTAA
- Protein Sequence
- MSPIKKKMFRYSPTKVKNALAAIKNGMPVLKASKLYKVPRSTLRHKVSGVSPQSSGRTGPEASLGNDVENKLILWLTESAKYGFPINKSSLQDSVQLLVKKNGIQTKFVDGRPGRKWFKAFLKRNPSISYNIRSMSTTLKQV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -