Bris010175.1
Basic Information
- Insect
- Brachyptera risi
- Gene Symbol
- -
- Assembly
- GCA_964007535.1
- Location
- OZ023328.1:5738711-5740867[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.5e-10 1e-07 32.6 0.0 3 37 17 51 15 60 0.89
Sequence Information
- Coding Sequence
- aTGGTTAGAACATACAAGCGCACTTCAGATCGTCAGGCATGGTCGACTACTGACATGGGCCTGGCCATTGAAGCAACTGTCAATGGCCGAATGGGTTGTCGTAAAGCGTCGACTACGTTCAACGTTCCGCAGACAACGCTTGAGCGTCGCCTAGTCAAGTATCGTGGAAACCCAGATTTGGACCATGCTACGGAAAAAGtccTGGGCTGTTTTAAATCTGTTTTTACGAAGCGTCAAGAAGATGAGCTTGTTGATTACATCAAGTCAATGGAACAAAGGTTGTTTGGTCTGACGACTGTGGATCTACGCAAACTAGCCTATCAATTAgcgaagaaaaataatataccaAATGCATTTAATGACAAGCAGGAGGAGGCTGGTTTGGATTGGCAGAAGGGATTTATGAAACGGCATCCGGATTTGTCATTGAGGACACCAGAGCCTACATCAGCAGCACGGGCGATGGGATTCAACCGTGTTTCAGTTGGTAAATTCTTCAGTCTTCTTACTACCGTCGTAGATAAACATGCACTCACGCCAGAAAGAATCTTTAACGTCGATGAAACAGGCGTAACATCTGTAGCGAATAGTCATTCAAAGATTATTGCACAAAAAGGACGAAGACAGGTAGGGACTCTTACATCTGCTGAAAGGGGACAAACTATCACGGCTGAAATATGTTTCAGTGCCGGAGGTATGTACATGCCACCGATGCTCATCTTTCCACGAGCTAGATTGAAACCAGCGCTAATGGATGATTCACCAATTCCCGGGGCATGGGCTGTAGCTCATCCGTCGGGATGGATGCAAATGGACATTTTTAAATCTTGGTTCGAGAAGTTTATTGTATGGTCCAGGGCCACACCAACCTCCCCTGTGCTTCTTTTGCTTGATGGGCATAAAACACACACCCGCAGCTTGGAAGTTATTGATCTTGCACATAAAAATGGTGTGATTCTTTTATGCTTTCCACCACATTGCACTCATCGTTTACAGCCattggatgtatcattcatgaaGCCTTTAAGCGCGTACTACTCGCACGCAGTAAGGAAATGGTTACGTACCCACCCAGGACGAGTCGTTGGCCAATTTCAAATTGCAAAGTTGTTCGGAGAAGCTTTCTTGCAAGCAGCGACAATGCCTACAGCCATCAATGGTTTCAGAAGAACAGGTATTTGGCCACTAGATGGAAACGTGTTCTCGGCTGCTGATTTTCTAGCCGCAGATACGACTGATAGACCGTTTGAAGCAGTTCCGGAAAATGATCTCATCGGTTATGAGCTTACAACACCGCTTGAAGAAGCAATCGATGACGATGTTGCTATAACTACACCTCTAGTTGCGATCGAGCCACAGACTGAAGCGGAAAATGAAGACGAAGACATCGGTGATGAACAAACACCCGTTCCTGGTTTTACAATCGATTACGAACCACTTCCTGGGTGCTCGACTGAAACTACTGCCGTGAGTCTGGCTGAGCCAACAGACATCCCTTTGGGTGATCTAACACGTTTCACCGTATCTCCGAAAGATATCCTACCCATTCCAAAAGCAAAACCCAAAGTTAATGTTAACAACCGACGCAAAGGCAAAACAGTAATTCTTACCGAATCGCCCTATCGTAACGAGCTAATAACTGACCAAAGTAATGCGGCAAATAAAATGGACTCAGTGCGGAATAAGGCGGTCAAACGGAAACTCATGTTGAACAAGAGAAACCCGAAGGCTAACAAAGCCGTAAAAATGTCGTCGAAGCCAAAAGTTGGCAAAAAGAAAAGGATGAAAGACGATGACCGCGCACAGAGTGATCCGACACTCGACGGAGATGCAGAGTGCTTATATTGTGCCGAACTATATTCGGAGTCCAACGAAGGTTGGGTTAGCTGTCAAATGTGCGCGCAATGGGCCCATTGTTCGTGTGCCGGAGTGGAGGACGATAAATCCAAGTGTAATTATGTTTGTGAGAGATGTTAA
- Protein Sequence
- MVRTYKRTSDRQAWSTTDMGLAIEATVNGRMGCRKASTTFNVPQTTLERRLVKYRGNPDLDHATEKVLGCFKSVFTKRQEDELVDYIKSMEQRLFGLTTVDLRKLAYQLAKKNNIPNAFNDKQEEAGLDWQKGFMKRHPDLSLRTPEPTSAARAMGFNRVSVGKFFSLLTTVVDKHALTPERIFNVDETGVTSVANSHSKIIAQKGRRQVGTLTSAERGQTITAEICFSAGGMYMPPMLIFPRARLKPALMDDSPIPGAWAVAHPSGWMQMDIFKSWFEKFIVWSRATPTSPVLLLLDGHKTHTRSLEVIDLAHKNGVILLCFPPHCTHRLQPLDVSFMKPLSAYYSHAVRKWLRTHPGRVVGQFQIAKLFGEAFLQAATMPTAINGFRRTGIWPLDGNVFSAADFLAADTTDRPFEAVPENDLIGYELTTPLEEAIDDDVAITTPLVAIEPQTEAENEDEDIGDEQTPVPGFTIDYEPLPGCSTETTAVSLAEPTDIPLGDLTRFTVSPKDILPIPKAKPKVNVNNRRKGKTVILTESPYRNELITDQSNAANKMDSVRNKAVKRKLMLNKRNPKANKAVKMSSKPKVGKKKRMKDDDRAQSDPTLDGDAECLYCAELYSESNEGWVSCQMCAQWAHCSCAGVEDDKSKCNYVCERC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00243094; iTF_00243095;
- 90% Identity
- iTF_00243094; iTF_00243095;
- 80% Identity
- -