Bris024730.1
Basic Information
- Insect
- Brachyptera risi
- Gene Symbol
- JRK
- Assembly
- GCA_964007535.1
- Location
- OZ023333.1:24366169-24367857[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.4e-10 9.6e-08 32.7 0.0 8 42 2 36 1 38 0.93
Sequence Information
- Coding Sequence
- ATGGCTGTTAGTGGAGTCGTTGATGGAGGGCTCACTGTACGCTCTGCTGCGGTTAGCTACGGCGTGCCGTACGGAACATTGTGGCGCCGGATAAATGGCCACGTAGAAGAGAATAAATTCACTCGTGGACCAACACCATGTTTGGGATTTGAGGTAGAGCTCGAGTTGAAAGAAGCCATAGTTCAATTGCAGTTGATGGGCTATGGCCTCACCAGGAAAGAAATTTTGGAAATGGCAAGTAAGATCGATGCGAAAATGGCCACACCTAATTTTAAAACTAAAAATGGGGTGCCCAGTAGCAGATGGTATTCGAGGTTTATGAACCGGCACAAGCTGACCCTGAGGACTCCCGAGAACTTATCCACCCAAAGAAAAGAAATGGCCACCATTGAAGTGAGGGACGAGTTCTTCGATAAGTTGACGACAATGGTGGAGGAGTTGAAACTCACCGCCAATCAGATATTTAATATGGACGAGTCAGGGCTCCAGATTGTATGCAAAGGCAGGAAGATAGCTGCACCCAAAGGGTCGAAGACTGTATACAAGCTTAAGTCAGGTGAACGAAGCGAGAATATTACTGTCGTAGGATGCGCGAACGCTTCGGGCACTATCGTTATACCACCAATGGTCATTTTTCGAGGCTTGTCGTTAAATGAAGATCTCATCAGTGATGCTCCTGAAGGTACCATATTCTCTTATTCTAAAAAGGGTTACATGGTGAGTGAGCTTTTTTTTGACTGGTTTGTCAAGTTTTTGCAGTTGATCCCCCCCAAAAGACCAATTCTGTTGCTACTCGACGGTCATGCCACTCACATGTCGAGGGAAGTGATCGTACTAGCAAGGGAAAATGATATTCATTTCTTGTGTTTTCCTCCGCATACAACCCATTTGTATCAACCAATGGATGTTGGTCTTTTCAAATCGCTGAAAGACAATTTTAAAGAAGAATGCGATAAACGGCTTCGTCGAACGAAGAAGACGCGTCTCAATAGGTACGATTTTGGGAAAGTATTCACTCCGTCGTGGATCAAGTCTGCCTCCCAATCCAATATTATTGGTGGGTTTGTTGGTAGTGGGATCTGGCCATTAAATCGAACTGCGGTTCGACAAGACCGACTTGTAGGGTCTATCACACCGGGCAGTATCTCTGCAAACAACGTTCCGTCTACCAGCACGTCAACCAGCGGAGAAGGTACGCCAGTATCATCCAGACGTGGCGACAGTACTCCAGTATGCGACACTCTACGGGAACTATTCGCACGTTTGGACGATGACACAGCTGCCGCAACTCAGCCGCGCAAATCTCGAGCTATCACCAAAACTCGCTGTTTCACATCCGACGAGTTCCTTGCCGAACTCGACGCAAAGCAGAAACTTAAGGACGACAAGGAGAAGAAGAAGCGAGGAATGCAGAAACAACGTAAAGTGACTGAATCAAGTGCAAGTGATGAAGATGATGTTGTCCCTTTGGAGGAAAGTGATGACGATCATTCTTTGGCGGACGACGAGTTAGCGACTCCATGCGGTACATGTTCGAAAATGTACTTTAATGACTGTGAAGGAGAAAATTGGTTCTCATGTGTAGTTTGTAAGACTTGGTATCATCTTACCTGCCAAGGTTTATCAAATAACTCGAAGAAAAAAGTAATCTACTGTTCGAAACCAAACTGTCAAAAGGTGAAGAAGTAG
- Protein Sequence
- MAVSGVVDGGLTVRSAAVSYGVPYGTLWRRINGHVEENKFTRGPTPCLGFEVELELKEAIVQLQLMGYGLTRKEILEMASKIDAKMATPNFKTKNGVPSSRWYSRFMNRHKLTLRTPENLSTQRKEMATIEVRDEFFDKLTTMVEELKLTANQIFNMDESGLQIVCKGRKIAAPKGSKTVYKLKSGERSENITVVGCANASGTIVIPPMVIFRGLSLNEDLISDAPEGTIFSYSKKGYMVSELFFDWFVKFLQLIPPKRPILLLLDGHATHMSREVIVLARENDIHFLCFPPHTTHLYQPMDVGLFKSLKDNFKEECDKRLRRTKKTRLNRYDFGKVFTPSWIKSASQSNIIGGFVGSGIWPLNRTAVRQDRLVGSITPGSISANNVPSTSTSTSGEGTPVSSRRGDSTPVCDTLRELFARLDDDTAAATQPRKSRAITKTRCFTSDEFLAELDAKQKLKDDKEKKKRGMQKQRKVTESSASDEDDVVPLEESDDDHSLADDELATPCGTCSKMYFNDCEGENWFSCVVCKTWYHLTCQGLSNNSKKKVIYCSKPNCQKVKK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00243073;
- 90% Identity
- iTF_00243073;
- 80% Identity
- iTF_00243093;