Bris035197.1
Basic Information
- Insect
- Brachyptera risi
- Gene Symbol
- -
- Assembly
- GCA_964007535.1
- Location
- OZ023338.1:16637761-16639467[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.4e-10 9e-08 32.8 0.0 9 42 9 42 9 44 0.93
Sequence Information
- Coding Sequence
- ATGAGACTTTGGCGATGGCTGTTAGTGGAGTCGTTGATGGAGGGAGGGCTCACTGTACGCTCTGCTGCGGTTAGCTACGGCGTGCCGTACGGAACATTGTGGCGCCGGATAAATGGCCACGTAGAAGAGAATAAATTCACTCGTGGACCAACACCATGTTTGGGATTTGAGGTAGAGCTCGAGTTGAAAGAAGCCATAGTTCAATTGCAGTTGATGGGCTATGGCCTCACCAGGAAAGAAATTTTGGAAATGGCAAGTAAGATCGATGCGAAAATGGCCACACCTAATTTTAAAACTAAAAATGGGGTGCCCAGTAGCAGATGGTATTCGAGGTTTATGAACCGGCACAAGCTGACCCTGAGGACTCCCGAGAACTTATCCACCCAAAGAAAAGAAATGGCCACCATTGAAGTGAGGGACGAGTTCTTCGATAAGTTGACGACAATGGTGGAGGAGTTGAAACTCACCGCCAATCAGATATTTAATATGGACGAGTCAGGGCTCCAGATTGTATGCAAAGGCAGGAAGATAGCTGCACCCAAAGGGTCGAAGACTGTATACAAGCTTAAGTCAGGTGAACGAAGCGAGAATATTAGTGTCGTAGGATGCGCGAACGCTTCGGGCACTATCGTTATACCACCAATGGTCATTTTTCGAGGCTTGTCGTTAAATGAAGATCTCATCAGTGATGCTCCTGAAGGTACCATATTCTCTTATTCTAAAAAGGGTTACATGGTGAGTGAGCTTTTTTTTGACTGGTTTGTCAAGTTTTTGCAGTTGATCCCCCCCAAAAGACCAATTCTGTTGCTACTCGACGGTCATGCCACTCACATGTCGAGGGAAGTGATCGTACTAGCAAGGGAAAATGATATTCATTTCTTGTGTTTTCCTCCGCATACAACCCATTTGTATCAACCAATGGATGTTGGTCTTTTCAAATCGCTGAAAGACAATTTTAAAGAAGAATGCGATAAACGGCTTCGTCGAACGAAGAAGACGCGTCTCAATAGGTACGATTTTGGGAAAGTATTCACTCCGTCGTGGATCAAGTCTGCCTCCCAATCCAATATTATTGGTGGGTTTGTTGGTAGTGGGATCTGGCCATTAAATCGAACTGCGGTTCGACAAGACCGACTTGTAGGGTCTATCACACCGGGCAGTATCTCTGCAAACAACGTTCCGTCTACCAGCACGTCAACCAGCGGAGAAGGTACGCCAGTATCATCCAGACGTGGCGACAGTACTCCAGTATGCGACACTCTACGGGAACTATTCGCACGTTTGGACGATGACACAGCTGCCGCAACTCAGCCGCGCAAATCTCGAGCTATCACCAAAACTCGCTGTTTCACATCCGACGAGTTCCTTGCCGAACTCGACGCAAAGCAGAAACTTAAGGACGACAAGGAGAAGAAGAAGCGAGGAATGCAGAAACAACGTAAAGTGACTGAATCAAGTGCAAGTGATGAAGATGATGTTGTCCCTTTGGAGGAAAGTGATGACGATCATTCTTTGGCGGACGACGAGTTAGCGACTCCATGCGGTACATGTTCGAAAATGTACTTTAATGACTGTGAAGGAGAAAATTGGTTCTCATGTGTAGTTTGTAAGACTTGGTATCATCTTACCTGCCAAGGTTTATCAAATAACTCGAAGAAAAAAGTAATCTACTGTTCGAAACCAAACTGTCAAAAGGTGAAGAAGTAG
- Protein Sequence
- MRLWRWLLVESLMEGGLTVRSAAVSYGVPYGTLWRRINGHVEENKFTRGPTPCLGFEVELELKEAIVQLQLMGYGLTRKEILEMASKIDAKMATPNFKTKNGVPSSRWYSRFMNRHKLTLRTPENLSTQRKEMATIEVRDEFFDKLTTMVEELKLTANQIFNMDESGLQIVCKGRKIAAPKGSKTVYKLKSGERSENISVVGCANASGTIVIPPMVIFRGLSLNEDLISDAPEGTIFSYSKKGYMVSELFFDWFVKFLQLIPPKRPILLLLDGHATHMSREVIVLARENDIHFLCFPPHTTHLYQPMDVGLFKSLKDNFKEECDKRLRRTKKTRLNRYDFGKVFTPSWIKSASQSNIIGGFVGSGIWPLNRTAVRQDRLVGSITPGSISANNVPSTSTSTSGEGTPVSSRRGDSTPVCDTLRELFARLDDDTAAATQPRKSRAITKTRCFTSDEFLAELDAKQKLKDDKEKKKRGMQKQRKVTESSASDEDDVVPLEESDDDHSLADDELATPCGTCSKMYFNDCEGENWFSCVVCKTWYHLTCQGLSNNSKKKVIYCSKPNCQKVKK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00243073;
- 90% Identity
- iTF_00243073;
- 80% Identity
- -