Bris016737.1
Basic Information
- Insect
- Brachyptera risi
- Gene Symbol
- -
- Assembly
- GCA_964007535.1
- Location
- OZ023330.1:35113859-35117809[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 0.25 1.7e+02 3.1 0.0 3 18 37 52 36 54 0.93 2 2 5.3e-10 3.5e-07 30.9 0.0 4 35 73 105 70 110 0.92
Sequence Information
- Coding Sequence
- ATGTCGGTCGCTGTGAAGGAGAAGATATTACTCGCAAGATGGGGCGACACCGAAGAGAGGGATCGGACGATGAATGCTCAGAGAAAGAGCGAAACGGATGAATACAAAGAAGCATTATCGTTGGCCGTTACACCTGTTGTTCGTGGCATGATGTCCAGATTGCGTGTGTATTATCCCGCCCTCCTGAAACTGAAAGCACCGACCTGGACCCAAAGCCAACTGAAGGAGGCGATTGACGCGGTTGTAAACCAGAAGATGCGTTTCACCCAGGCGTCGACGCGTTTTGGCATTCCTAAGGGCACACTTTACGATAATATTCTCGGCAAATCGAAACGTATGGTAGTGCTCGAGGAAGCGGGCCTGACTAGCTTAGAGGAGGAATCGGTCCTAGAGTTTTGTTGCGAGATATCCATCCAGCCTTACAATCGACGCACCAAAAAGTCCCTCCAGTCGATCTTGCTCTACGTGGAGAAGTTGCGACGTTCGCGCGATCCCGAGTTCCAATTCACCGGGCTAGCTGGGTTTAGGTGGTGGTGGGCATTTTGCAAGAAGCACAGCATCGCGTCTCTGTATTTCGATCGTAGCGACGATTAA
- Protein Sequence
- MSVAVKEKILLARWGDTEERDRTMNAQRKSETDEYKEALSLAVTPVVRGMMSRLRVYYPALLKLKAPTWTQSQLKEAIDAVVNQKMRFTQASTRFGIPKGTLYDNILGKSKRMVVLEEAGLTSLEEESVLEFCCEISIQPYNRRTKKSLQSILLYVEKLRRSRDPEFQFTGLAGFRWWWAFCKKHSIASLYFDRSDD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -