Bris013064.1
Basic Information
- Insect
- Brachyptera risi
- Gene Symbol
- -
- Assembly
- GCA_964007535.1
- Location
- OZ023329.1:4528909-4530939[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 4.5e-12 3e-09 37.5 0.0 2 39 16 53 15 56 0.95
Sequence Information
- Coding Sequence
- ATGGTACGCACGTACAAGCGAACATCAAACCGAGGGACATGGTGCGAGACAAATATGAAAAGTGCGATCGATGCCATTACAGCCGGAACCATGTCTTGTCGCAAAGCTTCAATAACGTTCGATATTCCTAGGTCGACAATTCAGAAAAGGCTAGAGACAGGCTCAAAGCCGGTTCTGAACATGGGTAGATTTAAGCCTATATTTTCTGCTGCTATAgaaactgaattgaaaaatcatcTTCAGACTGCCGAGAAGTTGTTTTACGGTTTGTCGGGAGCGGACTTTCGACGACTGACATATGAATTTGCCGAGATAAATGATATAGCTCATACATTTAATACAGAAACCAAAATGGCTGGAAAGGACTGGCTTAATCTTTTCATGACACGTCAGGGAGATTTGTCTTTTCGCATGCCAGAAGCTACGAGTATGGCCCGCGTTTCTGGATTCTCGCGAGGTAAAGTTACGAATTTTTTTGATTTGTACAAATCTTTACTGGACCAACACCAGTTCACTCCTGATCGGATTTGGAATATGGATGAAACGGGTATTTCGACGGTACAAAAACCTAAACAGATTATTGCTCAAAAGAATCGGAAGCAGGTTGGACGGGTTACGTCTGCAGAGAGAGGTCAAACGAACACGGTTGTTGGTACAATTAATGCCAACGGACAATTTATGCCACCAGTAGTTTTGTTTCCTAGGGTAAGGCACAATCCCCAGCTTCTAAAAGGTTCATTACATGGAACTGTTGGTTTCTCTAACAAGACAGGATGGATGGACACCGATCACTTTGTCAAGTATCTTGAACATTTTGTTACGCATGCGAAACCTACGAAAGAAGTACCGCACTTGTTAATTCTAGATGGGCATGCAAGCCACAAATCTCTAGCAGCCATTGAGTTTTGTCGTAACCATGGTATTGTAATGTTGACACTTCAACCGCATACTACGCACAAAATGCAGCCACTGGACCTTTGTGTTTACGGACCTTTCAAGACCTATCTTTACCAGGAAATGGATCGCTTCATGACCAACAACCCCGGTTCTCGAATTACGGATTCTGACCTTGCTCCCATACTCAAGACGGCGTATCTTAAAGCCTTCACACCTGTCAATATAACTAAAGGATTTCAAGTGTCTGGGCTATTCCCGTACAATCCAAGCGTGTTCAGCGACGATGACTGTGCAGCAGCTGATGCGGTTAATGCTCGGGTCGaacttgatgtaggcctactggttaaTGAAGACCTAGCATCGTCAGACGTGGAACTACCGTGGAGAGAGGTTCGAGTTGACGTAGAGGATGAAGTTGGTGACAACCTAGTAGAAGAAGACAGCCACGAATGGCTGATGGAAGATATGATTATTATCGACGATAATAATATCGATGTGTCCGAGTACATGCATCTCGACGAAGAAACGGGGTTGTTTGTCTCGGCTATCCAGCCTGTTGTTGACAATGTGCTTGACTGTGCTCCGTCAACTTCGAAAGCTCACGAGCCAACTGGGAAATCAGAACCCGTTCCGTCAACTTCGAGCGCTGCCGTTTACACTCCGTTTAACAAAATATCGCCGATTCCTCGATCGAAGCAAGTAAAAACGAATAAAGGGAAAAGAAAACAAGAAAATGCAGAAATATTAACATCATCTCCATACAAGAAATTAGTCCTTGACAAGGAGATGGTAAAGACTGAAAAGGAGAAGAAAAGACTAAGATTGGCTGAAGAAAGGGTTGAAAGATCTCGAATTAAGCTAGATCTACTACGGAAACCTGCGTCTGTGATAAAGAAAAATACGAAGACTAAGAAAGctaagaaaatgaaagaaacagTTAAAAAAACAACTGATAATATTGTGATATTGACAAATGATGTTATCGACATTACTCCGTGCGTCATGTGTGGGGAACGGCACTGTGACACTCCTTTCGAGGAGTGGATACAGTGCACAGCTTGTCCCAGATGGATGCACGAGGACTGTTCCGACTACAATAATCAGCCGTCATTCAAATGCGACTTTTGTCGCTAA
- Protein Sequence
- MVRTYKRTSNRGTWCETNMKSAIDAITAGTMSCRKASITFDIPRSTIQKRLETGSKPVLNMGRFKPIFSAAIETELKNHLQTAEKLFYGLSGADFRRLTYEFAEINDIAHTFNTETKMAGKDWLNLFMTRQGDLSFRMPEATSMARVSGFSRGKVTNFFDLYKSLLDQHQFTPDRIWNMDETGISTVQKPKQIIAQKNRKQVGRVTSAERGQTNTVVGTINANGQFMPPVVLFPRVRHNPQLLKGSLHGTVGFSNKTGWMDTDHFVKYLEHFVTHAKPTKEVPHLLILDGHASHKSLAAIEFCRNHGIVMLTLQPHTTHKMQPLDLCVYGPFKTYLYQEMDRFMTNNPGSRITDSDLAPILKTAYLKAFTPVNITKGFQVSGLFPYNPSVFSDDDCAAADAVNARVELDVGLLVNEDLASSDVELPWREVRVDVEDEVGDNLVEEDSHEWLMEDMIIIDDNNIDVSEYMHLDEETGLFVSAIQPVVDNVLDCAPSTSKAHEPTGKSEPVPSTSSAAVYTPFNKISPIPRSKQVKTNKGKRKQENAEILTSSPYKKLVLDKEMVKTEKEKKRLRLAEERVERSRIKLDLLRKPASVIKKNTKTKKAKKMKETVKKTTDNIVILTNDVIDITPCVMCGERHCDTPFEEWIQCTACPRWMHEDCSDYNNQPSFKCDFCR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00243076; iTF_00243077; iTF_00243078;
- 90% Identity
- iTF_00243077;
- 80% Identity
- -