Bris017959.1
Basic Information
- Insect
- Brachyptera risi
- Gene Symbol
- -
- Assembly
- GCA_964007535.1
- Location
- OZ023331.1:4024303-4028766[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.4e-10 9.5e-08 32.7 0.0 2 37 13 48 12 54 0.89 2 2 0.0014 0.91 10.4 0.0 3 41 487 524 485 527 0.91
Sequence Information
- Coding Sequence
- ATGGCTCCCAAGCCTCAGAAGCGAGCGCTCTGGAAACAAGAAGACATGGCTCGGGCCCTGAACGCAATCAACGAGAACGGGATGTCAGTTCTTGCGGCTTCGAAAAGGTTCGGCATTCCGCGTCGTACATTGCGTAGTCATGTCGTCAGTAAGAGTAGTGACCGAAGATTAGGGCGTAAGCCGTGGCTATCTCGAGCCGAAGAAAATGATTTAGCTGAAAGAATTTATCGCTTGTCTGAGGTAGGCATGCCACTAACTAATAAAGTCCTGAGGCGGTCCGTATTTTCATACTCGGAGTCCAAACAGGCTCAGCATCCCTTTGATACCGTCAAGTGCATGGCTGGTCGTAAGTGGCTTACAGCATTTATGCGTAGAAACCCAGGCATAGCCAATAGGCGTGCCCAGCACATGAACATGGCGCGTGCCCAAAAGTTGAACAGGTTCATAGTGAAAGATTATTTCACCAAGCTCGAAAATGTGTTGACAAAACTCAACTTCTTCAATAAGCCGGAACGCATATTCAATATCGATGAAAAGGGGTGTCGACTAACAGTACATCATCAACAAAAAGTGTTAGCGCGTAAAGGTTCGAAGAGAGTAAACTTGATTGCACCAGAGCATGCGGAAAATGTAACTATTGTTTCATGCGGCAACGCCTTGGGAAATTTTGTTCCACCCATGGTTATATTCAAAGGGGTTAGGTTGAAAGAAGAATGGAAAGACAATCTACCTCCAGGAACTTGCATCAAGATGGCCCCAAAGGGAAGTATGACCTCTCCCATTTTTACCGAGTGGATCGAGCATTTGGCATTGCATAAGCCTAGTGGTCCCATACTACTCATTTTTGATGGTGCCGCATCGCACTTCGATTACACAATTTGCGACGCTGCACTTAAACATGAAATCACTTTGTTCTGTTTACCAAGCAATACCACCCATGAGCTACAACCTATGGACAAGAGTGTGTTTAGATCCTTCGAGTCCTACTGGGATGATGAGGTGTTGAACTTCTGGTTACGAAATCCTGATCGTCAACTCAACAAACAACGCTTCGGAGCAATATTCAACACAGTTTGGTTAAAATCTGCAACCCCCTCCAACCTGATATCGGGTTTTAAAGCTTGCGGAATTGCACCGTTTGACCCTGACTGCATTCCTGATGTGGCTTATGCGCCGAGTGAAATTACTGAAAAAGAGTTGAATGATCCAGTTACTCAGCAACGAGCCATTGATGTAAGCGATGATTCTGACGACGAACCAGACAGTGAGTTAGAGGAACTACCTATTCCTACACACCAATCCACGCCAACCAAATCACTGAACACTTCGTCGGATGTTAGTTTCAAAGAATTACTCGAAACCCTGAAACTAACGAGGAAAACATCCACTGTTCGACGGAAAGCGATAAATTCAAGAGCCGAAGTTAGTCCAAGAAAGAAAGGAGCAAAATGGTCCAGTGAAAACCTGCGAAACGCTCTTGCTGCTATAGAAGCTGGACGCTCTCAGAGGGAAGTGGAAATTGCATTCAAAATTCCTCGTCGAACACTGCGAAACCATATGAAGACTGGAAATAACTTACGCAAACTAGGCCGTACCTCAGTTTTGACTGCTGCACAAGAGGCCGAGCTTGTTACTCGGATTATTCGCTTGGCTGACATAGGAGTGCCACTAACCTCCAAAGTTTTACGCCGCTCGGTTTTTCGCTATGTGGAGATTAATAGTATTTCACATAACTTTAGTCGAGAAAATATGTTGGCTGGCCGTGGATGGTACCGTCTGTTCATGAAACGTCATCTCAATTTGTCGGAGCGCAAAGCGCAATTTATGAATCCAGCGCGAGCTCAGAAACTGAACCCAGTCATTGTAAATGATTATTTTGATAAACTAGAAGAGATTCTGCGTAAATATGGGTTGTTTGAAAAGCCTGAGAAAATCTATAACATGGACGAGAAAGGATGCAGGCTTACAATCCACCAACAACAAACCGTGATAGCTCAACGCGGAGCGAAGAGAGTTCACCTCGTGGCCCCAGAGCATGCGGAGAATGTTACAGTCGTAGGTTGTGGTGATGCACTTGGAAATGCTGTACCACCAATGATTCTGTTCAAAGGTAAGAGAATGAAACCTGAATATGAAGATAACTTGCCGCCTAGGACCAGAGTTATGATGGCACCAAAGGGTAGCATGACGACGGAGCATTTTGTTGCATGGCTAGACCATTTCAGTCAGTTCAAACAACCAGGGCATGTGCTGTTAATTTTTGATGGTGCTGCAAGCCACCTTGACATATCTATTGTGGATAAAGCTGATGAACTTGATATTTTACTGTTTTGCTTACCCAGCAACACAACGCATGAGTTACAACCCATGGACAAATCTGTTTTTCGTTCTTTCGAACATCATTGGGATCAAGAGTTGCTTTTTTACTGGGATCGTCATCCAGACCGACGTCTAACAAAGGAACGCTTCGGTCATATTATTACCCCTGTATGGGAAAAATGCATGATTCAGTCAAACATTGCCAATGGATTTGAAGCAACGGGAATTTACCCATTCAATAGAGGCATAATCCCTGATCATGCATATGCTCCGAGCTCGGTCTCCGAGCGAATCGATCCACAAGTGAATGCGAACATTTgcaatgaaattgaacattcaAGTGATGACAAGGACAACGTGCCACTTGCTAGGCTAGCGACTCGTCAATTGACAGAAAATGTTTCTGTTTTGCTGTTAGCAGACCCTCGTGCTTCGTCCACTCCGGTACTGACGTCCCCAAGTAGCGAATCTGTGCAATTGTGTTCTGCATCGGCTGGATCAAACGTTTCGACTGAAGTGAGTGACAATTCATTCACTAATTTGCTATTGTCGCCAAAGACGTTTACAGGTCCACGTACCGGTGCTCCGCGCAAGAAGGCTTTAAACTATAAAGCACAGTGCTTGAACCGAGAACTGTTTTCTGAGCGCGAAAAGTCCAATTTAAAGCCGACAAAGAAAAGTGCAGGGCGCAAACGTAGTGTACCGTCAACTTCTAATAGCAGTAGCAGTCTACGGCAAGAAGCCGAAAATAACGAGTCCTGGTTTTGCGAAATGTGCGGGGAAGACAGGGTAACTGACATGCGCCCTTGCCACAAATGCCGTGTGTATTATCATGAGGACTGTATTGGATTTGAACCTGATGACACTGACTTATATACCTGCCCTGACTGTCTTGATTAA
- Protein Sequence
- MAPKPQKRALWKQEDMARALNAINENGMSVLAASKRFGIPRRTLRSHVVSKSSDRRLGRKPWLSRAEENDLAERIYRLSEVGMPLTNKVLRRSVFSYSESKQAQHPFDTVKCMAGRKWLTAFMRRNPGIANRRAQHMNMARAQKLNRFIVKDYFTKLENVLTKLNFFNKPERIFNIDEKGCRLTVHHQQKVLARKGSKRVNLIAPEHAENVTIVSCGNALGNFVPPMVIFKGVRLKEEWKDNLPPGTCIKMAPKGSMTSPIFTEWIEHLALHKPSGPILLIFDGAASHFDYTICDAALKHEITLFCLPSNTTHELQPMDKSVFRSFESYWDDEVLNFWLRNPDRQLNKQRFGAIFNTVWLKSATPSNLISGFKACGIAPFDPDCIPDVAYAPSEITEKELNDPVTQQRAIDVSDDSDDEPDSELEELPIPTHQSTPTKSLNTSSDVSFKELLETLKLTRKTSTVRRKAINSRAEVSPRKKGAKWSSENLRNALAAIEAGRSQREVEIAFKIPRRTLRNHMKTGNNLRKLGRTSVLTAAQEAELVTRIIRLADIGVPLTSKVLRRSVFRYVEINSISHNFSRENMLAGRGWYRLFMKRHLNLSERKAQFMNPARAQKLNPVIVNDYFDKLEEILRKYGLFEKPEKIYNMDEKGCRLTIHQQQTVIAQRGAKRVHLVAPEHAENVTVVGCGDALGNAVPPMILFKGKRMKPEYEDNLPPRTRVMMAPKGSMTTEHFVAWLDHFSQFKQPGHVLLIFDGAASHLDISIVDKADELDILLFCLPSNTTHELQPMDKSVFRSFEHHWDQELLFYWDRHPDRRLTKERFGHIITPVWEKCMIQSNIANGFEATGIYPFNRGIIPDHAYAPSSVSERIDPQVNANICNEIEHSSDDKDNVPLARLATRQLTENVSVLLLADPRASSTPVLTSPSSESVQLCSASAGSNVSTEVSDNSFTNLLLSPKTFTGPRTGAPRKKALNYKAQCLNRELFSEREKSNLKPTKKSAGRKRSVPSTSNSSSSLRQEAENNESWFCEMCGEDRVTDMRPCHKCRVYYHEDCIGFEPDDTDLYTCPDCLD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -