Basic Information

Insect: Brachyptera risi
Gene Symbol: -
Assembly: GCA_964007535.1
Location: OZ023327.1:2302288-2315984[+]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.023 15 6.4 0.0 1 20 514 533 514 533 0.94

2 9 0.023 15 6.4 0.0 1 20 545 564 545 564 0.94

3 9 0.023 15 6.4 0.0 1 20 576 595 576 595 0.94

4 9 0.023 15 6.4 0.0 1 20 607 626 607 626 0.94

5 9 0.023 15 6.4 0.0 1 20 638 657 638 657 0.94

6 9 0.023 15 6.4 0.0 1 20 669 688 669 688 0.94

7 9 0.023 15 6.4 0.0 1 20 700 719 700 719 0.94

8 9 0.023 15 6.4 0.0 1 20 731 750 731 750 0.94

9 9 1.7 1.1e+03 0.4 0.0 1 13 762 774 762 776 0.90

#	of	c-Evalue	i-Evalue	score	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.023	15	6.4	1	20	514	533	514	533	0.94
2	9	0.023	15	6.4	1	20	545	564	545	564	0.94
3	9	0.023	15	6.4	1	20	576	595	576	595	0.94
4	9	0.023	15	6.4	1	20	607	626	607	626	0.94
5	9	0.023	15	6.4	1	20	638	657	638	657	0.94
6	9	0.023	15	6.4	1	20	669	688	669	688	0.94
7	9	0.023	15	6.4	1	20	700	719	700	719	0.94
8	9	0.023	15	6.4	1	20	731	750	731	750	0.94
9	9	1.7	1.1e+03	0.4	1	13	762	774	762	776	0.90

Sequence Information

Coding Sequence: ATGCCACGTCCAGGGTGCAGTAAATGGCCCCAACAACCTTCCCAGTCCGAAAGTGAGGAGGAAGATGACGAGTGTGAGGATGAAAGTGATTCCGATAGTGAAACGGAAGAAGATGTTCGTCCGGGCAAGAAATCACGTCCTCAGAATAATGATCAAACCCACCAAGTAAGGAAGTGGGACTCCTCTGTGTATAAACCTGCACACAAGTTTGTAGGAAACCGCCCGGATACAATATTTCGGGAACCAAAACTTGGGTACGTTCCGTCTGTCCGTTTGGAAAAACAGCCGGATTTGTCTATGTACATGCCGTCTGCTGCAATGAAGAAACGCTTGGGACTAACCAAGAAAGTTCAGAAGCCAAAACGAACTATTTATACAGGAAAAACTTTCAGACTAGCTTTTAAGAAAGCAAAGTTATCTTGGGAGCCTCCATCTGAACAAAGTCCATTTGATACAGCCAAATACATTCGCGCTTATCAGCGTGTGGCCGAACTTTTCACCGTTGGAAGTCATTTGATGCTACCTCTCGTGAAAAAAGGCAAGCAGAAGCCTAAGAAGTGGCTGGTGCAGAAGGAGCCTAAAATTTCCTCGAAAACTAAAGCGCGATGCAGTGCAACCGTAGAGGCATGGATGGGACGGAGTGACCATAATCCTCTTGGTAAAAGAGGCATCCAAGGAACCAAGATTGAGGATCCAACCGAACTTCCGGGTTCCGATGATGAGTACATTGTGATTAGAGCCAAGCCGAGTGACAATACTCCGGTTAATAAAGTGGAGACCAAGATCAACAAAGAGGAGGCTAATATCAACAAAAAAGAGACTAAGATCAACAATGAGGAAACTAAGATCAACAAAAAAGAGACTAAGATCAACAATGAGGAGACTAAGATCAACAAAAAAGAGACTAAGATCAACAAAGAGGAAACTAATGTAAAGATCCTCGATGGCGAGTTGAATGGATCGGGTAGCTGGGAAAGCTGTGACGATTCTCAATCTAATACTCCTCCAAAGCACATTGAGAGTTCTTGTGTTCATCAACATGGTGAATATGTTTCTGTTCATGTGCCTGCATTATGCATCGGGAATGTAGTAATGACGATGAACACTGAGGCCTACGAAGTCGGAGTCCGAGTTCATCCTCACACACCCGTTTTCAGGAATAGGACAAACTGGGGGCTGAGAACGTACCGTTCGTTCAGTCATGGGAACACAGCGGCCACTCGGAGCGTTGATGAATGCAAGTGCGAACGTAGATGTTTGTGTGCACAGAACTTACGTGCCTTTGAGTGCAATCATGAAGATATGCAGAGGGAGAAGGCTGAGAAGGCCATGGCACAAACTGCTGGTTCAAAAGTTGAGCCCATACTTGTTAGAAACAATGCTGCTCTGCAGAGCAATCTTGAGGATTCATGTAGCAATGTAAATGCTCCAATGGTGGAAACTGGAATGGTTCAATACCCTGTTCAGTTCGACTCTCGCAATGACTGTACCAGGATCTCGAACACCCAGATGGTCAGAACAAGAACAAAAGGACTGACGAAGCCTGAAGACATGCCGAAAGCTGTGCAGATGGTTGTTGTTGATCAATTGTCCCTGTGTCCATCAGTCAAAAGGACTGCCATCAGACTGACGAAGCCTGAAGACATGCCGAAAGCTGTGCAGATGGTTGTTGTTGATCAATTGTCCCTGTGCCCATCAGTCAAAAGGACTGCCATCAGACTGACGAAGCCTGAAGACATGCCGAAAGCTGTGCAGATGGTTGTTGTTGATCAATTGTCCCTGTGCCCATCAGTCAAAAGGACTGCCATCAGACTGACTAAGCCTGAAGACATGCCGAAAGCTGTGCAGATGGTTGTTGTTGATCAATTGTCCCTGTGCCCATCAGTCAAAAGGACTGGCATCAGACTGACGAAGCCTGAAGACATGCCGAAAGCTGTGCAGATGGTTGTTGTTGATCAATTGTCCCTGTGCCCATCAGTCAAAAGGACTGCCATCAGACTGACTAAGCCTGAAGACATGCCGAAAGCTGTGCAGATGGTTGTTGTTGATCAATTGTCCCTGTGCCCATCAGTCAAAAGGACTGCCATCAGACTGACTAAGCCTGAAGACATGCCGAAAGCTGTGCAGATGGTTGTTGTTGATCAATTGTCCCTGTGCCCATCAGTCAAAAGGACTGCCATCAGACTGACTAAGCCTGAAGACATGCCGAAAGCTGTGCAGATGGTTGTTGTTGATCAATTGTCCCTGTGCCCATCAGTCAAAAGGACTGCCATCAGACTGACGAAGCCTGAAGACATGCCGAAAGCTGTGCAGATGGTTGTTGTTGATTGTCCCTGTGCCCATCAGTCAAAAGGACTGCCATCAGACTGA
Protein Sequence: MPRPGCSKWPQQPSQSESEEEDDECEDESDSDSETEEDVRPGKKSRPQNNDQTHQVRKWDSSVYKPAHKFVGNRPDTIFREPKLGYVPSVRLEKQPDLSMYMPSAAMKKRLGLTKKVQKPKRTIYTGKTFRLAFKKAKLSWEPPSEQSPFDTAKYIRAYQRVAELFTVGSHLMLPLVKKGKQKPKKWLVQKEPKISSKTKARCSATVEAWMGRSDHNPLGKRGIQGTKIEDPTELPGSDDEYIVIRAKPSDNTPVNKVETKINKEEANINKKETKINNEETKINKKETKINNEETKINKKETKINKEETNVKILDGELNGSGSWESCDDSQSNTPPKHIESSCVHQHGEYVSVHVPALCIGNVVMTMNTEAYEVGVRVHPHTPVFRNRTNWGLRTYRSFSHGNTAATRSVDECKCERRCLCAQNLRAFECNHEDMQREKAEKAMAQTAGSKVEPILVRNNAALQSNLEDSCSNVNAPMVETGMVQYPVQFDSRNDCTRISNTQMVRTRTKGLTKPEDMPKAVQMVVVDQLSLCPSVKRTAIRLTKPEDMPKAVQMVVVDQLSLCPSVKRTAIRLTKPEDMPKAVQMVVVDQLSLCPSVKRTAIRLTKPEDMPKAVQMVVVDQLSLCPSVKRTGIRLTKPEDMPKAVQMVVVDQLSLCPSVKRTAIRLTKPEDMPKAVQMVVVDQLSLCPSVKRTAIRLTKPEDMPKAVQMVVVDQLSLCPSVKRTAIRLTKPEDMPKAVQMVVVDQLSLCPSVKRTAIRLTKPEDMPKAVQMVVVDCPCAHQSKGLPSD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -