Bput010178.1
Basic Information
- Insect
- Brachyptera putata
- Gene Symbol
- spopl
- Assembly
- GCA_907164805.1
- Location
- OU015469.1:15868755-15878653[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.00023 0.02 16.2 0.2 1 21 355 375 355 376 0.97 2 13 0.0006 0.053 14.9 1.4 2 20 385 403 384 407 0.89 3 13 0.021 1.8 10.1 0.5 1 21 433 453 433 454 0.93 4 13 0.0015 0.13 13.7 4.7 2 23 462 483 461 484 0.94 5 13 7.1e-05 0.0063 17.8 0.1 1 19 516 534 516 537 0.94 6 13 2 1.8e+02 3.8 3.5 1 20 624 643 624 644 0.94 7 13 1.7 1.5e+02 4.1 2.9 1 21 654 674 654 675 0.91 8 13 3.2 2.9e+02 3.2 1.4 2 23 683 705 682 705 0.95 9 13 1.6e-05 0.0014 19.9 1.0 1 21 716 736 716 737 0.96 10 13 0.67 59 5.3 1.7 3 21 747 767 745 772 0.92 11 13 0.077 6.9 8.3 0.1 2 21 786 805 785 806 0.92 12 13 0.0023 0.21 13.1 2.2 1 20 814 833 814 835 0.94 13 13 0.0016 0.14 13.6 2.0 1 23 843 866 843 866 0.97
Sequence Information
- Coding Sequence
- ATGGCAGAACATATGGATATGATCACTCCTGACGACACTGAAATCGATGTACAATCTAAAATGAACGTAACGAAGGTATCGAGTACAAGTATATGGACATTACAGAATTACTCGCATCATGGTAAAACATGTGGCCAGTATATTGAACAGTCGATTAATTTTGGGGAGATGAATAACAGAAAAATTAACGAATGGATTATACGTTTGTATCCGGCTGGTAGAAATGAAGAATTTGGTGAATATGTTTCAATTTATTTGAAACCTGGAAAATACAATAAATGTCCAGCAGATGCTAGATTCAGGATTTGTATCGTGAGCTCGGTTATGAAGAACGGTTTCATAAAAGAATTCAATAGACCTATCGAGTACAGAAGTACACGGGGTTGGAAGAAGTTCCTGAGAAGGACTACGCTAGTGAACCCTCAGAACAAGTGTCTTCCAGGCGATGTGATGACAATACGTTGCTCAGTAACTCTGACCGAACTCAGCGACGAGCCACTCAAGATTCGCGATTCTCATCTCGGTCGAGATTTCAACGCTCTACTCACTAACCACGCCCACTCAGACGTGACGCTAGTTGTCGACGGCGAAGAATTGCAAGCCCACAAGTTGATTTTATCTGCACGCAGTCCGGTATTTGCCGCAATGTTCAGTCAAGATTACGCTGAGAATAGTTCGAACCGTGTGCACATTGTCGACATGTCGTCAGCTGCGTTGAAAGCGTTGCTGAGTTTCATCTACTCAGATAAAGTGGTTAAAATTGACGAGAATGCGCAGGAATTGTTGGTTGCTGCAAATAAGTATGGCTTAGAAAGGTTACACGAGATGTGTGAAGAATCGCTCGTGGCCAACCTTACCATCGAGAACTCTGCTCGTGTATTACGCCTTGCAGATCTGCATCGCGCCGATCAGCTCAAGGAGAAATATTTGGAAACCGACGAGATCAGTGTTGACTATCACGATGATCCTGACGATCCTCTGCCGGGCCTTACCATGCAAGATCTGATAGCAACCATTGGGAAAAGAGAGAAAAATGATTGTATCAGTAACTCGCCTGATTTGTACGTTTGTGACATTTGCCTGCGCGGTTACAAGAGTAAATATAATCTGAGAGAACATCTGCGTGACGAGTGTAATCAGAACGCACCACTGCAGTGTGCACACTGTCCCCAGCGCTTCAAGCAACCGCAGAACTTGAAAAGTCACTTTTTTGCTGTGCACCCCGAGGAACCTTGGATGCATACAGACCCGTCTACCAACCCCGTTGCCGACACATCGTTGCTATTTCCTTCTCGGTTCCACTGCGCCACCTGTTTTCGAAACTACGCAGACAAGGCTGGACTGAAGCGACACCTTGAGTCGTGTGGTAAATTGCCGCCGTTGAAATGCGACAAGTGTTTATATCGCACAACGCGTCCTGGTCATTTGACGAGACACATCAAGAACCATCACACTCAGCCCGTGTACGGTCGGTGTCTGCATCGCATTCCTCGTCTGGGGACGTGCCAGCCGGATGTCATGATGACGGAGGGTCCTCGGGACAAACACCCGTGTCCCGACTGTCCTAAGAGCTATCAGACTCGAGAACAGCTGCAGCGGCACGCGGACATCGAGTGTGGTAAAACGCCGATGCAGTCCGGATGTAAAATCTGTGCAACGATTAGTAAGGGGCCACGAAAGGAACGGAAAAACCAAAATTCTGTCCAGACAGTTATAAAGATGGAGCCTGTAGATATCAGTGATCCTGTTACCACAGATATACCCAAGGAAATCATCCCCTCTGTAACGCTTGATACGAAAGAGTTGCTTACTTCTGCGGACAAGTCCACGGCTCAACGTCGAATAGAGTTGGTTGAACGGTCAACGGTATTTCCGTGTCCCAAGTGTCATGCTTTTATGAAGACGCAAACAAGCTTCGAAAATCACCGGTGTCCTGAAACAAACAAGCTCTGTTTAGATTTCCAGTGCCCCAACTGCCGTCGATTTGTTAAGACACGAAAAGGTCGAATGAATCATACGTGTTCCAAAAGAATACGTGTAGGCCTACAGTGTGCTCTGTGTTCGATAACTAGGCACACGAAACAAGATCTAGGAGATCATCTCAGATACAAACACCCTGAGGTCATGGAATCCACCTCAGTGAAGTACGTATGTCATCGCTGCAATAAGTCTTTCAAGTCATTGGAGAACTTGAAGGGACATTTGCGTGCCACGTGTGGCAAACAGAAGACGATCGCATGTCCCCATGCTGATTGTACATACATGGCTAAAACGAAGTATCACATGAATACACATTTGAAGCAGTCTAGGAAACATACAGGCTATGTTATCAAACAACACGAACAAAAGCCCTGGCCTTGCCAGGTATGTGACAGAAGTTTCCTGAAGAAGCCTGAACTAGTGAAACACGTGAAATACAGATGTGGTGTGAATCCCCAATTCCATTGCTCGAACTGCAAGCGTATCTACCGCACTAAAAATGATCTGAATCGACACGTCACTTACGAGTGTGGTAAATCGCCCACATTCCAGTGCCCGAATTGCACGTACTGCGCCAAACGCAGATGGTCTCTGATGTCGCACATATCAAAGATACATAAAGAAAAAATGAACGACAAAAACTAA
- Protein Sequence
- MAEHMDMITPDDTEIDVQSKMNVTKVSSTSIWTLQNYSHHGKTCGQYIEQSINFGEMNNRKINEWIIRLYPAGRNEEFGEYVSIYLKPGKYNKCPADARFRICIVSSVMKNGFIKEFNRPIEYRSTRGWKKFLRRTTLVNPQNKCLPGDVMTIRCSVTLTELSDEPLKIRDSHLGRDFNALLTNHAHSDVTLVVDGEELQAHKLILSARSPVFAAMFSQDYAENSSNRVHIVDMSSAALKALLSFIYSDKVVKIDENAQELLVAANKYGLERLHEMCEESLVANLTIENSARVLRLADLHRADQLKEKYLETDEISVDYHDDPDDPLPGLTMQDLIATIGKREKNDCISNSPDLYVCDICLRGYKSKYNLREHLRDECNQNAPLQCAHCPQRFKQPQNLKSHFFAVHPEEPWMHTDPSTNPVADTSLLFPSRFHCATCFRNYADKAGLKRHLESCGKLPPLKCDKCLYRTTRPGHLTRHIKNHHTQPVYGRCLHRIPRLGTCQPDVMMTEGPRDKHPCPDCPKSYQTREQLQRHADIECGKTPMQSGCKICATISKGPRKERKNQNSVQTVIKMEPVDISDPVTTDIPKEIIPSVTLDTKELLTSADKSTAQRRIELVERSTVFPCPKCHAFMKTQTSFENHRCPETNKLCLDFQCPNCRRFVKTRKGRMNHTCSKRIRVGLQCALCSITRHTKQDLGDHLRYKHPEVMESTSVKYVCHRCNKSFKSLENLKGHLRATCGKQKTIACPHADCTYMAKTKYHMNTHLKQSRKHTGYVIKQHEQKPWPCQVCDRSFLKKPELVKHVKYRCGVNPQFHCSNCKRIYRTKNDLNRHVTYECGKSPTFQCPNCTYCAKRRWSLMSHISKIHKEKMNDKN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00242339;
- 90% Identity
- iTF_00242339;
- 80% Identity
- iTF_00242339;