Basic Information

Insect: Brachyptera putata
Gene Symbol: -
Assembly: GCA_907164805.1
Location: OU015475.1:3166585-3169698[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.012 1.1 10.8 1.1 2 23 209 230 208 230 0.97

2 10 0.0007 0.062 14.7 6.0 1 23 236 258 236 258 0.97

3 10 0.00031 0.027 15.8 2.4 1 23 264 286 264 286 0.98

4 10 5.6e-06 0.0005 21.3 2.4 1 23 292 314 292 314 0.98

5 10 0.00023 0.02 16.3 2.8 1 23 320 342 320 342 0.97

6 10 0.0038 0.34 12.4 2.9 1 23 348 370 348 370 0.98

7 10 0.002 0.17 13.3 5.3 1 23 376 398 376 398 0.98

8 10 0.033 2.9 9.4 1.9 1 23 404 426 404 426 0.96

9 10 0.0012 0.11 14.0 1.9 1 23 457 479 457 479 0.96

10 10 0.0087 0.77 11.3 4.2 1 23 484 507 484 507 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.012	1.1	10.8	1.1	2	23	209	230	208	230	0.97
2	10	0.0007	0.062	14.7	6.0	1	23	236	258	236	258	0.97
3	10	0.00031	0.027	15.8	2.4	1	23	264	286	264	286	0.98
4	10	5.6e-06	0.0005	21.3	2.4	1	23	292	314	292	314	0.98
5	10	0.00023	0.02	16.3	2.8	1	23	320	342	320	342	0.97
6	10	0.0038	0.34	12.4	2.9	1	23	348	370	348	370	0.98
7	10	0.002	0.17	13.3	5.3	1	23	376	398	376	398	0.98
8	10	0.033	2.9	9.4	1.9	1	23	404	426	404	426	0.96
9	10	0.0012	0.11	14.0	1.9	1	23	457	479	457	479	0.96
10	10	0.0087	0.77	11.3	4.2	1	23	484	507	484	507	0.96

Sequence Information

Coding Sequence: ATGGACCCGGATCCCTTAGCCATAGTGACTGAGGAAGGAGATCTTACGAGGGACGAACCAGTAGATGCGTTGCAATCAGGTATCGTACAACCCGTTGTCGGAATCTCGTTGTCGTTGTCACCTCAACGATCATTACGTCACAGTTGCACCTTGTTCTTATTCGCAGTTGCCGTTATCATGACGGACTACGATCCCAGCAAATGTGACGTAACGAAACAGTTCTCTGATCCGACCTCTTCAATCCCGGAGTGTGAAACTTCACAAAACGGGCTACTTGTGATAAAGCGGGAAGTACCGGATGTCCCGGATGAATGTATATCGGAGCCGGAGGAAGTAGATCAGTTCGCTTTTGTAACGGTTAAAGAAGAACCATACGAAGAATTATCCAGTCACCAAGCAGATGTTGATATACCCAAGATTGAAAGTACAGATAATTTATTGGCGCCAGAAACTCATTCTGATTCGATAATATCCACAACACCACGAACTACATCTACGAGTGTGGACAATAAAAATGAATCTCCGACAACAATCACTTCTAGCGTCGATAACAAAATAGATAAGCCAACTAAAAAACCCAGAAAAACAAAATCAAAACAAAAGAACATCACAATCTCACCCTCCACATGCAGCGTATGTAACTACCACACCGATAACCCGACCTACATGAAAGCTCACGTGAAAGTCCACTCCGGAGAAAAACCATTCCATTGCACCGAATGTTCTTTCCGTTGCAATCGATCGAGTAACCTCAAAATCCACATGACTATACACACCGGTACGCAAGCGTTCCGTTGCCCGGAATGCCCTTTCAAATGCAACCAATCGAGTCGTCTATCCAATCACATGACAGTCCACTCTGGCGTAATGCCATTCCAGTGCGAGGTATGTTCTCACACCTTCCGAGATCCATCGACGTTCAAAAGACATTTATTAATCCATGCCGACGCACCGCAATTTCAGTGCCAAGTCTGTCCGTACAAATGCACACGAGCGAGTTATTTAAAAACGCATAATATGATCCATACGGGTGAGAAACCGCATCGTTGTAAAATGTGTCCGTATAAAGCGCCGACGCGATCTCATATAAGCCGTCACATGTTGGTACATACCGGTCAGAAGCCGTTCCAGTGCAAGCAGTGTTCTTACTCGTGCCGCGAGTCGGACAAACTGAAGAAACACGCGAAGAGTCACGACGGCGGGGAGGTGTTTGCGTGCCGACGTTGCTCGTACGAGACGATGCGGTCGTACGATCTGAAGAGGCACGAGACGACGCATGGAACGTTGCGGTTCCATTGCGACGCTTTTGTCGACGTAAATATCAGATGTCTCGTCATATTATGGTGGTTCATGCGGCGATGTAGAACGTTTGCGTGCCGACGTTGCTCGTATGTGACGTCGCGGTCGTACGATCTGAAGAGGCACGAGACGACGCATGGAACGTTGCGGTTCCATTGTGATGTTTGTGTGTTCAGTTGTCGACGTAAATATCAGATGTCTCGTCATATTATGGTGGTTCATGCGGCGATGTAG
Protein Sequence: MDPDPLAIVTEEGDLTRDEPVDALQSGIVQPVVGISLSLSPQRSLRHSCTLFLFAVAVIMTDYDPSKCDVTKQFSDPTSSIPECETSQNGLLVIKREVPDVPDECISEPEEVDQFAFVTVKEEPYEELSSHQADVDIPKIESTDNLLAPETHSDSIISTTPRTTSTSVDNKNESPTTITSSVDNKIDKPTKKPRKTKSKQKNITISPSTCSVCNYHTDNPTYMKAHVKVHSGEKPFHCTECSFRCNRSSNLKIHMTIHTGTQAFRCPECPFKCNQSSRLSNHMTVHSGVMPFQCEVCSHTFRDPSTFKRHLLIHADAPQFQCQVCPYKCTRASYLKTHNMIHTGEKPHRCKMCPYKAPTRSHISRHMLVHTGQKPFQCKQCSYSCRESDKLKKHAKSHDGGEVFACRRCSYETMRSYDLKRHETTHGTLRFHCDAFVDVNIRCLVILWWFMRRCRTFACRRCSYVTSRSYDLKRHETTHGTLRFHCDVCVFSCRRKYQMSRHIMVVHAAM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -