Basic Information

Insect: Brachyptera putata
Gene Symbol: Prdm11_1
Assembly: GCA_907164805.1
Location: OU015472.1:5606785-5622436[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 4.3 3.8e+02 2.8 0.5 3 23 216 236 215 236 0.92

2 17 0.052 4.6 8.8 3.6 1 19 250 268 250 270 0.95

3 17 1.5e-05 0.0013 20.0 0.8 1 23 611 633 611 633 0.99

4 17 0.0014 0.12 13.8 2.0 1 21 637 657 637 658 0.94

5 17 2.7 2.4e+02 3.4 0.3 2 10 672 680 671 693 0.95

6 17 9.7e-05 0.0086 17.4 0.6 1 23 730 753 730 753 0.96

7 17 3.9 3.5e+02 2.9 0.1 2 23 789 810 789 810 0.95

8 17 0.39 34 6.1 1.7 1 21 814 834 814 835 0.92

9 17 0.079 7 8.3 0.2 3 23 839 859 837 859 0.97

10 17 0.36 32 6.2 0.9 1 19 864 882 864 882 0.95

11 17 0.00083 0.074 14.5 0.7 2 23 909 930 908 930 0.96

12 17 0.0091 0.8 11.2 3.2 1 23 935 957 935 957 0.92

13 17 0.011 0.94 11.0 1.0 2 23 963 986 962 986 0.93

14 17 3.6e-05 0.0032 18.8 1.9 1 23 992 1014 992 1014 0.96

15 17 8.9e-06 0.00079 20.7 2.5 1 23 1023 1045 1023 1045 0.98

16 17 0.0057 0.51 11.8 2.9 1 23 1051 1076 1051 1076 0.97

17 17 0.16 14 7.3 2.8 1 23 1080 1103 1080 1103 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	4.3	3.8e+02	2.8	0.5	3	23	216	236	215	236	0.92
2	17	0.052	4.6	8.8	3.6	1	19	250	268	250	270	0.95
3	17	1.5e-05	0.0013	20.0	0.8	1	23	611	633	611	633	0.99
4	17	0.0014	0.12	13.8	2.0	1	21	637	657	637	658	0.94
5	17	2.7	2.4e+02	3.4	0.3	2	10	672	680	671	693	0.95
6	17	9.7e-05	0.0086	17.4	0.6	1	23	730	753	730	753	0.96
7	17	3.9	3.5e+02	2.9	0.1	2	23	789	810	789	810	0.95
8	17	0.39	34	6.1	1.7	1	21	814	834	814	835	0.92
9	17	0.079	7	8.3	0.2	3	23	839	859	837	859	0.97
10	17	0.36	32	6.2	0.9	1	19	864	882	864	882	0.95
11	17	0.00083	0.074	14.5	0.7	2	23	909	930	908	930	0.96
12	17	0.0091	0.8	11.2	3.2	1	23	935	957	935	957	0.92
13	17	0.011	0.94	11.0	1.0	2	23	963	986	962	986	0.93
14	17	3.6e-05	0.0032	18.8	1.9	1	23	992	1014	992	1014	0.96
15	17	8.9e-06	0.00079	20.7	2.5	1	23	1023	1045	1023	1045	0.98
16	17	0.0057	0.51	11.8	2.9	1	23	1051	1076	1051	1076	0.97
17	17	0.16	14	7.3	2.8	1	23	1080	1103	1080	1103	0.95

Sequence Information

Coding Sequence: ATGCCAAATATTCTACTAACTATTTGTGATCTATGTGGTGAAAACCATAGAACTGAAGCATGTGTACGTTTGAAGAAAGTAATGCCAGTGAGTGACAGCAAGACCCCGTCGTATGCTCGGCTTACAGTTCCCGATGTTTTGGAAATTGTAACACTTGCTGATGGCAGCAATACAGTAAAAACTAAGACGTTCTTGACGAAGAATACTCTGTTTGGACCATTTCATGCCAGATCAGTGAATAGGTTGATTCCCGGGATCAGATTTCCTCTGAAGTTATTCACAGAGACGGGAGGTTATTATCTCGACACGACGGATGAGCGCGACTGCAACTGGATGTGTTTCGTCGAGGGTTCGGTGACCGGCTTTCCCAAGGCCAACGAACAGAATCTCGTGTGCTATCAGAGCGAAGACGACATGTTTTACTTGACCTGTAGAAATATTCTACCTGGCGAGGTTTTGAAAGTTAGCTACGCACCGCATTACGCCAAGAAATTGGGTCTTCAAGCAACATCGGTGCGGTGCACCGAAGCGGAAGTTCTGCGAGCGTTGAACGAGAAGGAGAAACAAGCCGTCAAGCTCATAGTGGAGAAGCTTCCGTCGTCGGCGCTGGGAGTCCCCGAGAAGAAGCAGGACAACAGGTGGCTGTGTTCCGTGTGCGGTCGCAACGACTTCACCGTCACGCAGTTTGCACAGCACATGACCACGCACTTGAAGGAGGAAGAAACCACCGCTGTTCCTCAGAAGAAACATAAATGCCTCAGTTGTGACAAGGAGTACGTGTCGAAAAAAAATTTAGCTAAGCACAACTGTTGTCCAGCAAAGAATAAGAAGAAAGTTGCCAAAGGAACTGTGATAGTCCAAGATGTTGCCAAACCAAACGTTGCTGCCGATACAGTTGTCGAGGAGATGGTTACATTCGAAACAAGTGACGAGTTAGCCGCATCAGTGAACTACAACGCTGGAATCGTGCATAATGACACATTGGAAAACCTCCTCCAAGAGTTCGAAGAAAACGTTCTAAAAATGGAGGGAGATCGAGCGGAGATGGACTGCGAGATGCCGGACAGTGATGACGTGATGTTCAGTATCGATCCGCACGAAATGACACTCGCTCCCACTCACGATCCGACCGCCGTTCAACCCCTCCTCAACATCTGTCGTAATTATTCTTCTACAACAGCCAATCACACCGTTTTCGATAATCAGTTTTTATCAGGACAAAAACCAGAGTCGTTTCCTTCGTTGGATTATAATCTTCCTGACGATGAGTTGGACAAACCGATGGAAGTAGATTGCATCGTCTCGAATCCGAACGACACTTTCGCTGCCGGACACTTTTTAAACGACCATATGTTTTTCGAGAAACGGACCAATAAAATTATAGATAAACTGGGCGTTGAAGATGTTAATTGTAACACTTTCAAATTGCCCGATATAAGTTTCAACTGCGATAACAGTTCTAGCCTCACAGAGTCCAGTTTGTCCAAACTGGAGCGAAACATTCTGATCGAAGTCGAGAAAGAATTACCGAACGAAGGTTTGGCCGATCGGAACTTTGACTTGGAGAATAACGATAAACGATTGTCAAACGATCCCGAACTAAGTTTCTACCTGGACCCGAATATTTCCGTGGACCTGGAAAACGAGTTGTTTGGTAAAGGCCAGGCGGATGAGAGTTTCATCAGTAACGTTGACGATCTTATGAACAGGAGTTTTGATATTTCGTTCCTGCCGCCCGTGAATCTGTCGCAGGCTGCCACGATCGAGAGCGTGGATGATTTCGAGATGAGTGTGTCGCTAAGTCAAGAAGAACCGTTGATCGAAAAGAAATTCAGATGTGATATTTGTTCAAAGATGTTTGTCAGACGTGTGGGCGTGATACGTCACATGAAGAAACATACTGGGCAGTTTACGTGTTCGTATTGTCAAATGGTGTTTGCTCGCAACGAGAGTCTGGTCCATCACAAGTGTATCCCGAAGCCGCTGGCTGCGGTGCCGAACAGCGTGCTTGTCAAGTGCGAGATGTGCGACAAGATGTTCCTCGGCTCCGACTCCCGAGCGCTCACCTGCCACATTCAGGCCGTACACAAGAAGCGTTGGAAGTGCAAGTTCTGCAACGGCATCTACTCGTCGATGTACACCCAACGGCTCCACCGCTGCCCGATGAACGTCCAGCCGAGCAAACAGTTCGACTGCCCGTACTGCAAGAAGACGTTCTCGATGGACGTGTATCTCAAGAAGCACGTGGCCACCGTTCACGCCCCGCGCCAGCGCTGCGCGGTCTGCGACAAGAGGATCGTGCGCAACGAGTTCCACGAGATGTACTGCAGTGAGGCGAAGGAGCTGGAGACCGCCGGGGTCGCCAAGTGTCCGCAGTGTTTCGACATGTTCGTCGACGTCGTCGCTTACAGGGAGCACGCGCTGATGCACACGCACGCGTTCAATTGCGCCGGCTGCGGGCTGAGGTTTGTCTCGAATAAGTTGAAAGAGAGTCACTTGTGTCACCCGATGGCGTGCGACTTGTGCCGCCGTCAGTTCAACGCGTTCAGCGACTACAAGGCCCACGTCGCTACGCACGGCGTTCCCGCGTTCCACTGCTTCGAGTGTGGCATCAGCTATCACACCGCGGAGGGCTTGTCATCACACGATTGTGCCAATCAAGGTCACGGCGAAGTACGTAAATCGCAGGCAGAGAATTCGAAGAATCGTAAAAAGTCGCCGCTTATTTGTCACACGTGCGGTCTATCCTTCCAGCTCGCAGCCACTCTCAGCAAACACATGGACACGCACGGGGAACCCAGGTTTATGTGTGATATTTGCGATAAAAAATTCCACCGTTCCGACCTGCTGAAGTTCCACAAGTCCGTCCACGAAGATAGGAAGGTGACCTGCTCGTACCCGAACTGCGGCGCCACGTTCAAGAACACGAAGACGATGTCCACGCACCAGCGCCAGCACACGAAGGGCACGAGGTTTGCGTGCGCCCACTGCGACCGGGCGTTCTACCAGAAGGTGCACCTGGAGAAGCACTTGGAGGTGCACAAGACGGCGCACTCGCGCAAGGAGTTCACCTGCGACATGTGCCCCAAGCTGTTCTCGTCGCGGTACAACCTGACCAAGCACAAGCGGCTGCACTCGGCAGGCAAGCTGTTCAAGTGCACGTTCAACAACTGCAAGAAGTCGTACACAACGGAGGGAAGTCGACGCGATCACATGAAGATGAGTCACGAGAGCATGTACGTGTGTCTGATCTGCAAAAAGTCGATCGCGTTCCGTTGTTCCATGAAGCGGCACCTGCTCAACAAGCACAAGGACTCGATCGACAAGAACGACGTGGAACGCACGCTGAACGCGATCCACGTCAAGAAAGTCGCTACTGGTACGCCTCCCAGCGACGTCAGCGAGGCTAGCCGTTGA
Protein Sequence: MPNILLTICDLCGENHRTEACVRLKKVMPVSDSKTPSYARLTVPDVLEIVTLADGSNTVKTKTFLTKNTLFGPFHARSVNRLIPGIRFPLKLFTETGGYYLDTTDERDCNWMCFVEGSVTGFPKANEQNLVCYQSEDDMFYLTCRNILPGEVLKVSYAPHYAKKLGLQATSVRCTEAEVLRALNEKEKQAVKLIVEKLPSSALGVPEKKQDNRWLCSVCGRNDFTVTQFAQHMTTHLKEEETTAVPQKKHKCLSCDKEYVSKKNLAKHNCCPAKNKKKVAKGTVIVQDVAKPNVAADTVVEEMVTFETSDELAASVNYNAGIVHNDTLENLLQEFEENVLKMEGDRAEMDCEMPDSDDVMFSIDPHEMTLAPTHDPTAVQPLLNICRNYSSTTANHTVFDNQFLSGQKPESFPSLDYNLPDDELDKPMEVDCIVSNPNDTFAAGHFLNDHMFFEKRTNKIIDKLGVEDVNCNTFKLPDISFNCDNSSSLTESSLSKLERNILIEVEKELPNEGLADRNFDLENNDKRLSNDPELSFYLDPNISVDLENELFGKGQADESFISNVDDLMNRSFDISFLPPVNLSQAATIESVDDFEMSVSLSQEEPLIEKKFRCDICSKMFVRRVGVIRHMKKHTGQFTCSYCQMVFARNESLVHHKCIPKPLAAVPNSVLVKCEMCDKMFLGSDSRALTCHIQAVHKKRWKCKFCNGIYSSMYTQRLHRCPMNVQPSKQFDCPYCKKTFSMDVYLKKHVATVHAPRQRCAVCDKRIVRNEFHEMYCSEAKELETAGVAKCPQCFDMFVDVVAYREHALMHTHAFNCAGCGLRFVSNKLKESHLCHPMACDLCRRQFNAFSDYKAHVATHGVPAFHCFECGISYHTAEGLSSHDCANQGHGEVRKSQAENSKNRKKSPLICHTCGLSFQLAATLSKHMDTHGEPRFMCDICDKKFHRSDLLKFHKSVHEDRKVTCSYPNCGATFKNTKTMSTHQRQHTKGTRFACAHCDRAFYQKVHLEKHLEVHKTAHSRKEFTCDMCPKLFSSRYNLTKHKRLHSAGKLFKCTFNNCKKSYTTEGSRRDHMKMSHESMYVCLICKKSIAFRCSMKRHLLNKHKDSIDKNDVERTLNAIHVKKVATGTPPSDVSEASR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00243654;
90% Identity: -
80% Identity: -