Bput013020.1
Basic Information
- Insect
- Brachyptera putata
- Gene Symbol
- lola
- Assembly
- GCA_907164805.1
- Location
- OU015470.1:25257076-25268916[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00061 0.054 14.9 0.9 2 21 69 88 68 89 0.94 2 12 0.007 0.62 11.6 4.4 1 21 112 132 112 133 0.95 3 12 0.7 62 5.3 2.8 1 23 141 164 141 164 0.94 4 12 0.00014 0.012 16.9 1.0 2 21 182 201 181 202 0.95 5 12 0.039 3.5 9.2 1.5 1 19 210 228 210 229 0.95 6 12 0.0046 0.41 12.1 2.4 3 21 240 258 238 259 0.93 7 12 0.00012 0.011 17.1 0.4 2 20 266 284 265 286 0.93 8 12 0.037 3.3 9.3 3.7 1 21 293 313 293 314 0.96 9 12 0.00011 0.0096 17.2 0.6 1 19 320 338 320 341 0.95 10 12 0.24 21 6.7 5.8 1 20 347 366 347 368 0.94 11 12 3.5e-05 0.0031 18.8 0.6 1 21 392 412 392 413 0.96 12 12 0.0027 0.24 12.8 1.9 1 23 421 444 421 444 0.96
Sequence Information
- Coding Sequence
- ATGTTTATCCTTGTTTACTTATCAACCCCACCAACAGCCAGGTTATTTGGGGGTATACGTGAGGAGCTGATCATCACGAGGAGGAGCAGGAGTCTACAACAACTCATGCCATACGCGGATTGCAAACCAAAGCTGCTTCGTGACTTCAGTTTCTACCCAAGTGCCAAGGCTCAATCGAAGCGCGAAATAGACCCTCTTGCCTGGCCGTGTCCTTCCTGCAAACGCATCTACAAGAACAGGCGCCATCTGAACAGCCACCTGCGATACGAGTGTGCTAAAATTGGTTTCCACACGATATTCGGTTCGGTCGAATGCGAGCTGATCACCGCTCGCTTCCAGTGCCCGTCGTGTTACAAGAACTACAAGCACAAGTGCGACCTGGCCAGACATGTGAAGCACGAGTGTGGTAAAGAGCCGCAGTACCAGTGCCCGTGCTGTCCTTACCGGGCCAAACTCAAGTTCAACCTGAGAACGCATTACTTGGCCAAACACAACGTCAACTATATGAAATGTGTGAAGTTTGGCCAAGGCCCGGAGCGGTCCACTTGTCCGACGTGTCAACGGAGCTACGCGCGTCACGACACGTTGTTACGTCACCAGCGGTACGAGTGCGACGCGCCGCGGCAGTTCTTCTGCGTGCTCTGTCCGCAAGCATTCAAGCTGAAACATCAGCTCAAGTCGCACAGCTGGGGTGTACATCATACTTCACGGTTGATTTGTCTGACTTGCCGTCGCTCGTTCCGCAATCATCATCTTCTGCAGACTCACCTGAAATTGGAGTGTGATAGAGCACTTGTATGTCCTTCTTGTGGTAAAGTTTACAAACATTTGTCCTCGTTGAGTCGACATAAGTATGAGTGTGAGATGATGAGACGGTTCAAATGCCCGCATTGCTCCTACCATGCCAAACAGAGGACAAAACTTACTTACCATATTAATTTCGGCAGCGACAGTCGTTTTGTTTGCACCGACTGCAACCGTACGTTTGCGAAGCGTCACCTCTTGCAAACACATTCCATCGTCGACTGCGGCAGAACTCATAAGTGCCTCACGTGTAGCAAGACGTACAAACACTTGGCCTCGTTCTATCGGCATAAACACGAGTGTTATCAGATTGTGAGATATTTTCCGTCTCACTCTGCGAGAGGCATTGTTGACCGTGATGAAAGCCCGTACAGATGCTTGACTTGTAACAAGGTGTATTCACGCAAAGGTCCGCTGACTCGCCACATAAAGTACGAGTGTGGTAAAGAGCCTCAGTTTGCTTGTCCGTTCTGTTCATATCGTTCGAAACAGAACAGTGTGCTTAAAACTCACATGACACGAAAACATTTGAAAGCCTTATCACTCCTTACAAGTCCTTGA
- Protein Sequence
- MFILVYLSTPPTARLFGGIREELIITRRSRSLQQLMPYADCKPKLLRDFSFYPSAKAQSKREIDPLAWPCPSCKRIYKNRRHLNSHLRYECAKIGFHTIFGSVECELITARFQCPSCYKNYKHKCDLARHVKHECGKEPQYQCPCCPYRAKLKFNLRTHYLAKHNVNYMKCVKFGQGPERSTCPTCQRSYARHDTLLRHQRYECDAPRQFFCVLCPQAFKLKHQLKSHSWGVHHTSRLICLTCRRSFRNHHLLQTHLKLECDRALVCPSCGKVYKHLSSLSRHKYECEMMRRFKCPHCSYHAKQRTKLTYHINFGSDSRFVCTDCNRTFAKRHLLQTHSIVDCGRTHKCLTCSKTYKHLASFYRHKHECYQIVRYFPSHSARGIVDRDESPYRCLTCNKVYSRKGPLTRHIKYECGKEPQFACPFCSYRSKQNSVLKTHMTRKHLKALSLLTSP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -