Bput009362.1
Basic Information
- Insect
- Brachyptera putata
- Gene Symbol
- -
- Assembly
- GCA_907164805.1
- Location
- OU015469.1:5556399-5558123[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 2.8 2.5e+02 3.4 4.5 2 23 146 168 145 168 0.94 2 12 0.0068 0.6 11.6 0.8 1 23 192 214 192 214 0.98 3 12 0.015 1.3 10.5 4.1 1 23 234 256 234 256 0.97 4 12 0.00034 0.03 15.7 1.3 1 23 262 285 262 286 0.96 5 12 7.3e-05 0.0065 17.8 1.2 1 23 290 312 290 312 0.95 6 12 1.4e-05 0.0012 20.1 1.0 1 23 318 340 318 340 0.99 7 12 0.00015 0.014 16.8 1.1 2 23 347 369 346 369 0.95 8 12 0.00026 0.023 16.1 5.6 2 23 375 397 374 397 0.95 9 12 0.011 0.93 11.0 2.0 2 23 405 426 404 426 0.96 10 12 9.1e-05 0.0081 17.5 0.8 1 23 433 457 433 457 0.96 11 12 4.5e-06 0.00039 21.6 1.7 1 23 463 485 463 485 0.96 12 12 0.016 1.4 10.4 1.9 1 23 490 512 490 512 0.97
Sequence Information
- Coding Sequence
- ATGGCCACGCAGCAAGATGTGAAGCCGTTCTCCGGAAACGAACTAATTAAACAAGAAACGTTTCAAGATCATGATATAAGACCTCCGCCACGATTCCAGCTCTTCTCAGAAGCTCATCCAGTCAAAAGTGAAACAATTGACGTAGAAGACACATCTCCACACACAAGTGATATCAGGAATTATGTCTGTCAAATTGATACATGTTTACAGACTGACAAACCTGACAACAATGTAGTGCCCAGAGTGAATGATCAGAACTCGGGTCAGTCTGAAGAAACTACAGAAAACAGTTCAGAGAATGTGCGTGCCGATAGAGGATCAATTAGACAGGAAATGTTGATGAATGAAAACGACAGTCGTAATGAAACAATCGATAATACCAACACAAACAAACAAGATGTTGACCGTCACTGGCTTGGAAACAATGGCAAGCTTTGTTGTCAACTGTGTGATGCTAAGTACAGAAATCTACAAACGTGTAGAAGGCATATTTTACGTGTACATCTGAGTGCTAGTGAAAGTCAATATTTGTCCACGAATAGCGCTGATTTGGAAGAACCTTCAAAACAGCTGTTTCAGTGCAACATTTGTTCCAAAAAGTTGTATGATCGTCAGAAAATCATAGCGCATCTGAAATTGCATGAAGAAAAACAACTTGACAAAGACACTGACTCACACTGGGTAAAAAAGAGAGAGATCTATTGTTGTCTTATGTGTGATGCAACGTTCTCAAGGCGTGATAAATGTCGAGCACATATTAGAGCACATCTTAACATACGCCCGTATGCTTGTGAAGTATGTGATAAAACTTTCACTGAAAAATATCTAATGGATTCTCACGTGAAGAAAATTCATCACGATGGTAAGCATCAATGCAAGGAATGCGGTCGAAAATATGGCAACGCCAGTGAATTGAAAGACCACGCAAACTTTCACTTGGGTAAAACTCCGTACAAGTGTAAAGTTTGCAAGAAACAGTTCCCAGAGAATGTGCAGTTAGTTGCTCATAGACGTCGCCATGAGAACTCAACGCTGTCGGTATGCGAATTGTGTGGGAAAGTATTTTCTAACCTCATGAAATTTCGATACCATCGAAGATATTCTCATGATAGTGCAATCTGCGAATGCAAGGAATGCGATATGACATTCAAAAACCAGAGGTATTTGTATCGACACAAGCGACAAAGACATATGCCGTATGAGGAAAGACTCAAGTGTGACTTGTGTTCCAAGACATTGACTACTCGTCATACAATGGTCCAACATCTTGCTTCTCATGCGCGCACACTAAAAGTATTCAAGTGCACGAAGCCCGAATGTGACAAAGTCTTTAGTTCAACAGCTTATTTACAAGAGCACTTGTTTCAACACGACGGCATGGCAAAGTTCAGTTGTGAGATTTGTGGTAAAGCGTTTTTCCACGCTTCTAATCTAACAAGTCACAAGTTTGTCCACCGGGAGAAAACATTTGAGTGCGCATTGTGCGGAGTTAAATTTAAGATGAATGCCCAATTGAAGTGTCACGTGAAGAAACACGAAACCAGCAAGTTTCTGCAGGAACGTGCACGGAAATATAAAGAAAAAGACAATGAGAAAAGTGATGATGTACCGGTAATCAAGAAAAAAGAAGTAAAGAAGCGGACAAGTAAGCCTACTGGTACAAGGCTTTCTGACAGAAAGAAACAACAGAAATGCAAAGATGAAAGCGTAGAGCCTAGTACGTAA
- Protein Sequence
- MATQQDVKPFSGNELIKQETFQDHDIRPPPRFQLFSEAHPVKSETIDVEDTSPHTSDIRNYVCQIDTCLQTDKPDNNVVPRVNDQNSGQSEETTENSSENVRADRGSIRQEMLMNENDSRNETIDNTNTNKQDVDRHWLGNNGKLCCQLCDAKYRNLQTCRRHILRVHLSASESQYLSTNSADLEEPSKQLFQCNICSKKLYDRQKIIAHLKLHEEKQLDKDTDSHWVKKREIYCCLMCDATFSRRDKCRAHIRAHLNIRPYACEVCDKTFTEKYLMDSHVKKIHHDGKHQCKECGRKYGNASELKDHANFHLGKTPYKCKVCKKQFPENVQLVAHRRRHENSTLSVCELCGKVFSNLMKFRYHRRYSHDSAICECKECDMTFKNQRYLYRHKRQRHMPYEERLKCDLCSKTLTTRHTMVQHLASHARTLKVFKCTKPECDKVFSSTAYLQEHLFQHDGMAKFSCEICGKAFFHASNLTSHKFVHREKTFECALCGVKFKMNAQLKCHVKKHETSKFLQERARKYKEKDNEKSDDVPVIKKKEVKKRTSKPTGTRLSDRKKQQKCKDESVEPST
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -