Bput031437.1
Basic Information
- Insect
- Brachyptera putata
- Gene Symbol
- -
- Assembly
- GCA_907164805.1
- Location
- OU015475.1:648520-656908[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0048 0.42 12.1 2.8 1 23 154 176 154 176 0.97 2 13 9.4e-05 0.0083 17.5 7.1 1 23 182 204 182 204 0.98 3 13 0.00035 0.031 15.6 2.4 1 23 210 232 210 232 0.98 4 13 0.0018 0.16 13.4 1.2 2 23 275 296 274 296 0.96 5 13 0.0018 0.16 13.4 1.2 2 23 339 360 338 360 0.96 6 13 0.0018 0.16 13.4 1.2 2 23 403 424 402 424 0.96 7 13 0.0018 0.16 13.4 1.2 2 23 467 488 466 488 0.96 8 13 0.0018 0.16 13.4 1.2 2 23 531 552 530 552 0.96 9 13 0.0018 0.16 13.4 1.2 2 23 595 616 594 616 0.96 10 13 0.0018 0.16 13.4 1.2 2 23 659 680 658 680 0.96 11 13 0.0018 0.16 13.4 1.2 2 23 723 744 722 744 0.96 12 13 0.0023 0.2 13.1 2.2 2 23 787 808 786 808 0.97 13 13 0.0018 0.16 13.4 1.2 2 23 851 872 850 872 0.96
Sequence Information
- Coding Sequence
- ATGGACCTGGTACCCTTGGCCTTGGTGAAAGAGGGCGACTCTGTAGCGAAGAACAAACCGCGGGACGAGTGTGAATCAGCGGCTACTAACATGACCGAGTGTAAAGCACTGAGACAGACTTCTGAGCCGGCCGCTTCAAGCACGGAAAAGGGAATGAACCGGGAAGATCCGGATGAGAGTGATTCCGAGCCGGAAGAATTGGACGCGATGGCTTACGTAGCTGTTAAACTAGAACCGAACGAAGACTCGCCCAGTAGCCGATTGGACGTGGACCCGGGCAGGAACGACGGCTCGTCGGAGGACGACCTTGAGCCGCTGAACATGGTGATGACGGAGATGAAGAACGAGAGGAGGAACGCGAGCGGAGAACTGTCCGCGGAGATCGGGAGGCTGGAGGCCATAAACACCACCGTCACGCTTTCTCCCGCACCGACCAACGACCCGGCGCCCGCCCAGCCGTTCAGTTGCCGGGCGTGCCCCTACACGTGCCGCAAGTCCAGCAGCCTCAAGACCCACCTGCTGATCCACACGGGCGAGCACCCGTACCGCTGCCCCGAGTGCCCCTACAAATGTCGTACGTCCAGCTGCCTCAAGCGCCACATGTACAAGCACAGCGGGGCGCAGCCTTACCGGTGCAAGAGATGTTCTTACGCGTGCAGCCAGTCGGGGGACCTGAAGAAACACGTCCTCATACACACGGCCGTGCAAGAGATGTTCTTACGCGTGCAGCCAGTCGGGGGACCTGAAGAAACACGTCCTCATACACACGGGTCAGTGCAAGTGTCTCTAGCCGGTACAAGTGTCTCTAGCCACGTCACGCAGCCGTGCAAGAGATGTTCTTACGCGTGCAGCCAGTCGGGGGACCTGAAGAAACACGTCCTCATACACACGGCCGTGCAAGAGATGTTCTTACGCGTGCAGCCAGTCGGGGGACCTGAAGAAACACGTCCTCATACACACGGGTCAGTACAAGTGTCTCTAGCCGGTACAAGTGTCTCTAGCCACGTCACGCAGCCGTGCAAGAGATGTTCTTACGCGTGCAGCCAGTCGGGGGACCTGAAGAAACACGTCCTCATACACACGGCCGTGCAAGAGATGTTCTTACGCGTGCAGCCAGTCGGGGGACCTGAAGAAACACGTCCTCATACACACGGGTCAGTGCAAGTGTCTCTAGCCGGTACAAGTGTCTCTAGCCACGTCACGCAGCCGTGCAAGAGATGTTCTTACGCGTGCAGCCAGTCGGGGGACCTGAAGAAACACGTCCTCATACACACGGCCGTGCAAGAGATGTTCTTACGCGTGCAGCCAGTCGGGGGACCTGAAGAAACACGTCCTCATACACACGGGTCAGTGCAAGTGTCTCTAGCCGGTACAAGTGTCTCTAGCCACGTCACGCAGCCGTGCAAGAGATGTTCTTACGCGTGCAGCCAGTCGGGGGACCTGAAGAAACACGTCCTCATACACACGGCCGTGCAAGAGATGTTCTTACGCGTGCAGCCAGTCGGGGGACCTGAAGAAACACGTCCTCATACACACGGGTCAGTGCAAGTGTCTCTAGCCGGTACAAGTGTCTCTAGCCACGTCACGCAGCCGTGCAAGAGATGTTCTTACGCGTGCAGCCAGTCGGGGGACCTGAAGAAACACGTCCTCATACACACGGCGGTGCAAGAGATGTTCTTACGCGTGCAGCCAGTCGGGGGACCTGAAGAAACACGTCCTCATACACACGGGTCAGTGCAAGTGTCTCTAGCCGGTACAAGTGTCTCTAGCCACGTCACGCAGCCGTGCAAGAGATGTTCTTACGCGTGCAGCCAGTCGGGGGACCTGAAGAAACACGTCCTCATACACACGGCCGTGCAAGAGATGTTCTTACGCGTGCAGCCAGTCGGGGGACCTGAAGAAACACGTCCTCATACACACGGGTCAGTGCAAGTGTCTCTAGCCGGTACAAGTGTCTCTAGCCACGTCACGCAGCCGTGCAAGAGATGTTCTTACGCGTGCAGCCAGTCGGGGGACCTGAAGAAACACGTCCTCATACACACGGCCGTGCAAGAGATGTTCTTACGCGTGCAGCCAGTCGGGGGACCTGAAGAAACACGTCCTCATACACACGGGTCAGTGCAAGTGTCTCTAGCCGGTACAAGTGTCTCTAGCCACGTCACGCAGCCGTGCAAGAGATGTTCTTACGCGTGCAGCCAGTCGGGGGACCTGAAGAAACACGTCCTCATACACACGGCCGTGCAAGAGATGTTCTTACGCGTGCAGCCAGTCGGGGGACCTGAAGAAACACGTCCTCATACACACGGGTCAGTGCAAGTGTCTCTAGCCGGTACAAGTGTCTCTAGCCACGTCACGCAGCGGTGCAAGAGATGTTCTTACGCGTGCAGCCAGTCGGGGGACCTGAAGAAACACGTCCTCATACACACGGCCGTGCAAGAGATGTTCTTACGCGTGCAGCCAGTCGGGGGACCTGAAGAAACACGTCCTCATACACACGGGTCAGTGCAAGTGTCTCTAGCCGGTACAAGTGTCTCTAGCCACGTCACGCAGCCGTGCAAGAGATGTTCTTACGCGTGCAGCCAGTCGGGGGACCTGAAGAAACACGTCCTCATACACACGGACTTCTTCTTCCTCTTCTTCACAACTATCCTCTGCTACTTCTTCTCTTCTTACGAGTTCCCTCCACCGTTCTCTATCCTCCCACCATCTCTCATCTAG
- Protein Sequence
- MDLVPLALVKEGDSVAKNKPRDECESAATNMTECKALRQTSEPAASSTEKGMNREDPDESDSEPEELDAMAYVAVKLEPNEDSPSSRLDVDPGRNDGSSEDDLEPLNMVMTEMKNERRNASGELSAEIGRLEAINTTVTLSPAPTNDPAPAQPFSCRACPYTCRKSSSLKTHLLIHTGEHPYRCPECPYKCRTSSCLKRHMYKHSGAQPYRCKRCSYACSQSGDLKKHVLIHTAVQEMFLRVQPVGGPEETRPHTHGSVQVSLAGTSVSSHVTQPCKRCSYACSQSGDLKKHVLIHTAVQEMFLRVQPVGGPEETRPHTHGSVQVSLAGTSVSSHVTQPCKRCSYACSQSGDLKKHVLIHTAVQEMFLRVQPVGGPEETRPHTHGSVQVSLAGTSVSSHVTQPCKRCSYACSQSGDLKKHVLIHTAVQEMFLRVQPVGGPEETRPHTHGSVQVSLAGTSVSSHVTQPCKRCSYACSQSGDLKKHVLIHTAVQEMFLRVQPVGGPEETRPHTHGSVQVSLAGTSVSSHVTQPCKRCSYACSQSGDLKKHVLIHTAVQEMFLRVQPVGGPEETRPHTHGSVQVSLAGTSVSSHVTQPCKRCSYACSQSGDLKKHVLIHTAVQEMFLRVQPVGGPEETRPHTHGSVQVSLAGTSVSSHVTQPCKRCSYACSQSGDLKKHVLIHTAVQEMFLRVQPVGGPEETRPHTHGSVQVSLAGTSVSSHVTQPCKRCSYACSQSGDLKKHVLIHTAVQEMFLRVQPVGGPEETRPHTHGSVQVSLAGTSVSSHVTQRCKRCSYACSQSGDLKKHVLIHTAVQEMFLRVQPVGGPEETRPHTHGSVQVSLAGTSVSSHVTQPCKRCSYACSQSGDLKKHVLIHTDFFFLFFTTILCYFFSSYEFPPPFSILPPSLI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -